ALBERT

Description: The marine environment encompasses a huge biological diversity and can be considered as an underexplored location for prospecting bioactive molecules. In this review, the current state of art about antimicrobial molecules from marine bacteria has been summarized considering the main phylum and sources evolved in a marine environment. Considering the last two decades, we have found as most studied group of bacteria producers of substances with antimicrobial activity is the Firmicutes phylum, in particular strains of the Bacillus genus. The reason for that can be attributed to the difficult cultivation of typical Actinobacteria from a marine sediment, whose members are the major producers of antimicrobial substances in land environments. However, a reversed trend has been observed in recent years with an increasing number of reports settling on Actinobacteria. Great diversity of chemical structures have been identified, such as fijimicyns and lynamicyns from Actinomycetes and macrolactins produced by Bacillus.

Description: Nitrogen fixers, or diazotrophs, play a key role in the carbon and nitrogen cycle of the world oceans, but the controlling mechanisms are not comprehensively understood yet. The present study compares two paradigms on the ecological niche of diazotrophs in an Earth System Model (ESM). In our standard model configuration, which is representative for most of the state-of-the-art pelagic ecosystem models, diazotrophs take advantage of zooplankton featuring a lower food preference for diazotrophs than for ordinary phytoplankton. We compare this paradigm with the idea that diazotrophs are more competitive under oligotrophic conditions, characterized by low (dissolved, particulate, organic and inorganic) phosphorous availability. Both paradigms are supported by observational evidence and lead to a similar good agreement to the most recent and advanced observation-based nitrogen fixation estimate in our ESM framework. Further, we illustrate that the similarity between the two paradigms breaks in a RCP 8.5 anthropogenic emission scenario. We conclude that a more advanced understanding of the ecological niche of diazotrophs is mandatory for assessing the cycling of essential nutrients, especially under changing environmental conditions. Our results call for more in-situ measurements of cyanobacteria biomass if major controls of nitrogen fixation in the oceans are to be dissected.

Description: It is generally assumed that seismic activity at volcanoes is closely connected to degassing processes. Intuitively, one would therefore expect a good correlation between degassing rates and seismic amplitude. However, both examples and counterexamples of such a correlation exist. In this study on Villarrica volcano (Chile), we pursued a different approach to relate gas flux and volcanic seismicity using 3 months of SO$_2$ flux rate measurements and 12 days of seismic recordings from early 2012.〈br /> We analyzed the statistical distributions of interevent times between transient seismic waveforms commonly associated with explosions and between peaks in the degassing time series.〈br /> Both event types showed a periodic recurrence with a mode of 20-25 s and around 1 h for transients and degassing, respectively. The normalized interevent times were fitted by almost identical log-normal distributions. Given the actually very different time scales, this similarity potentially indicates a scale-invariant phenomenon. We could reproduce these empirical findings by modelling the occurrence of transients as a renewal process from which the degassing events were derived recursively with increasing probability since the previous degassing event. In this model, the seismic transients could be either produced by degassing processes within the conduit or by gas release at the lava lake surface while the longer intervals of the degassing events may be explained by accumulation of gas either in the magma column or in the juvenile gas plume.〈br /> Additionally, we analyzed volcano-tectonic events, which behaved very differently from the transients. They showed the clustered occurrence of tectonic earthquakes.

Description: Introduction: The marine environment is a very promising resource for natural product research, with many of these reaching the market as new drugs, especially in the field of cancer therapy as well as the drug discovery pipeline for new antimicrobials. Exploitation for bioactive marine compounds with unique structures and novel bioactivity such as the isoquinoline alkaloid; trabectedin, the polyether macrolide; halichondrin B, and the peptide; dolastatin 10, requires the use of analytical techniques, which can generate unbiased, quantitative, and qualitative data to benefit the biodiscovery process. Metabolomics has shown to bridge this understanding and facilitate the development of new potential drugs from marine sources and particularly their microbial symbionts. Areas covered: In this review, articles on applied secondary metabolomics ranging from 1990–2018 as well as to the last quarter of 2019 were probed to investigate the impact of metabolomics on drug discovery for new antibiotics and cancer treatment. Expert opinion: The current literature review highlighted the effectiveness of metabolomics in the study of targeting biologically active secondary metabolites from marine sources for optimized discovery of potential new natural products to be made accessible to a R&D pipeline.

Description: Ice flow models of the Antarctic ice sheet are commonly used to simulate its future evolution in response to different climate scenarios and assess the mass loss that would contribute to future sea level rise. However, there is currently no consensus on estimates of the future mass balance of the ice sheet, primarily because of differences in the representation of physical processes, forcings employed and initial states of ice sheet models. This study presents results from ice flow model simulations from 13 international groups focusing on the evolution of the Antarctic ice sheet during the period 2015–2100 as part of the Ice Sheet Model Intercomparison for CMIP6 (ISMIP6). They are forced with outputs from a subset of models from the Coupled Model Intercomparison Project Phase 5 (CMIP5), representative of the spread in climate model results. Simulations of the Antarctic ice sheet contribution to sea level rise in response to increased warming during this period varies between −7.8 and 30.0 cm of sea level equivalent (SLE) under Representative Concentration Pathway (RCP) 8.5 scenario forcing. These numbers are relative to a control experiment with constant climate conditions and should therefore be added to the mass loss contribution under climate conditions similar to present-day conditions over the same period. The simulated evolution of the West Antarctic ice sheet varies widely among models, with an overall mass loss, up to 18.0 cm SLE, in response to changes in oceanic conditions. East Antarctica mass change varies between −6.1 and 8.3 cm SLE in the simulations, with a significant increase in surface mass balance outweighing the increased ice discharge under most RCP 8.5 scenario forcings. The inclusion of ice shelf collapse, here assumed to be caused by large amounts of liquid water ponding at the surface of ice shelves, yields an additional simulated mass loss of 28 mm compared to simulations without ice shelf collapse. The largest sources of uncertainty come from the climate forcing, the ocean-induced melt rates, the calibration of these melt rates based on oceanic conditions taken outside of ice shelf cavities and the ice sheet dynamic response to these oceanic changes. Results under RCP 2.6 scenario based on two CMIP5 climate models show an additional mass loss of 0 and 3 cm of SLE on average compared to simulations done under present-day conditions for the two CMIP5 forcings used and display limited mass gain in East Antarctica.

Description: Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Blas.to.chlo'ris. Gr. masc. n. blastos bud shoot; Gr. masc. adj. chloros green; N.L. fem. n. Blastochloris green bud shoot. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Blastochloris Blastochloris species are anoxygenic phototrophic Alphaproteobacteria that have bacteriochlorophyll b in their photosynthetic reaction centers. Crystals of the photosynthetic reaction centers of Blastochloris viridis were the first that have been studied in high‐resolution structure analysis at 3 Å resolution. Internal photosynthetic membranes are present as lamellae underlying and parallel to the cytoplasmic membrane. Cells are rod shaped to ovoid and exhibit polar growth, budding, and asymmetric cell division and form rosette‐like cell aggregates. They are motile by means of subpolar flagella and stain Gram‐negative. Straight‐chain monounsaturated C18:1 is the predominant component of cellular fatty acids. Ubiquinones and menaquinones are present, and the lipopolysaccharides are characterized by a 2,3‐diamino‐2,3‐deoxy‐d‐glucose (DAG)‐containing, phosphate‐free lipid A with amide‐bound C14:0 3OH. DNA G + C content (mol%): 63.8–68.3. Type species: Blastochloris viridis (Drews and Giesbrecht 1966) Hiraishi 1997 (Rhodopseudomonas viridis Drews and Giesbrecht 1966).

Description: Remobilization of soil carbon as a result of permafrost degradation in the drainage basin of the major Siberian rivers combined with higher precipitation in a warming climate potentially increase the flux of terrestrial derived dissolved organic matter (tDOM) into the Arctic Ocean. The Laptev (LS) and East Siberian Seas (ESS) receive enormous amounts of tDOM-rich river water, which undergoes at least one freeze-melt cycle in the Siberian Arctic shelf seas. To better understand how freezing and melting affect the tDOM dynamics in the LS and ESS, we sampled sea ice, river and seawater for their dissolved organic carbon (DOC) concentration and the colored fraction of dissolved organic matter. The sampling took place in different seasons over a period of 9 years (2010–2019). Our results suggest that the main factor regulating the tDOM distribution in the LS and ESS is the mixing of marine waters with freshwater sources carrying different tDOM concentrations. Of particular importance in this context are the 211 km3 of meltwater from land-fast ice from the LS, containing ~ 0.3 Tg DOC, which in spring mixes with 245 km3 of river water from the peak spring discharge of the Lena River, carrying ~ 2.4 Tg DOC into the LS. During the ice-free season, tDOM transport on the shelves takes place in the surface mixed layer, with the direction of transport depending on the prevailing wind direction. In winter, about 1.2 Tg of brine-related DOC, which was expelled from the growing land-fast ice in the LS, is transported in the near-surface water layer into the Transpolar Drift Stream that flows from the Siberian Shelf toward Greenland. The actual water depth in which the tDOM-rich brines are transported, depends mainly on the density stratification of the LS and ESS in the preceding summer and the amount of ice produced in winter. We suspect that climate change in the Arctic will fundamentally alter the dynamics of tDOM transport in the Arctic marginal seas, which will also have consequences for the Arctic carbon cycle.

Description: Traceability and reliable results are the two pillars of analytical methods; certified reference materials (CRMs) meet this requirement. ISO 17034:2016 credentials provide brief information on general requirements for the competence of Reference Material Producers (RMPs). The different types of CRMs have been produced in recent years for chemical analysis in food, water, soil, and sediment matrices in recent years. This review provides a detailed overview of the development of CRMs in the field of marine environment, as matrix CRMs play an important role in the field of environmental monitoring. COMAR database, EVISA database: materials, LGC standards, and JRC catalogs are very helpful online resources to find various types of CRMs according to the application requirements. Highlights - The classification of certified reference materials (CRMs) in the field of marine environment is presented; - General information about the production and characteristics of CRMs is discussed; - Examples of use of existing marine CRMs are described in detail; - Importance of CRMs for QA/QC and CRMs development for chemical analysis is presented; - The parameters that characterize the CRMs: representativeness, homogeneity, stability, and certified value are provided.

Description: The Last Glacial Maximum (LGM, ~ 21,000 years ago) has been a major focus for evaluating how well state-of-the-art climate models simulate climate changes as large as those expected in the future using paleoclimate reconstructions. A new generation of climate models have been used to generate LGM simulations as part of the Palaeoclimate Modelling Intercomparison Project (PMIP) contribution to the Coupled Model Intercomparison Project (CMIP). Here we provide a preliminary analysis and evaluation of the results of these LGM experiments (PMIP4-CMIP6) and compare them with the previous generation of simulations (PMIP3-CMIP5). We show that the PMIP4-CMIP6 are globally less cold and less dry than the PMIP3-CMIP5 simulations, most probably because of the use of a more realistic specification of the northern hemisphere ice sheets in the latest simulations although changes in model configuration may also contribute to this. There are important differences in both atmospheric and ocean circulation between the two sets of experiments, with the northern and southern jet streams being more poleward and the changes in the Atlantic Meridional Overturning Circulation being less pronounced in the PMIP4-CMIP6 simulations than in the PMIP3-CMIP5 simulations. Changes in simulated precipitation patterns are influenced by both temperature and circulation changes. Differences in simulated climate between individual models remain large so, although there are differences in the average behaviour across the two ensembles, the new simulation results are not fundamentally different from the PMIP3-CMIP5 results. Evaluation of large-scale climate features, such as land-sea contrast and polar amplification, confirms that the models capture these well and within the uncertainty of the palaeoclimate reconstructions. Nevertheless, regional climate changes are less well simulated: the models underestimate extratropical cooling, particularly in winter, and precipitation changes. The spatial patterns of increased precipitation associated with changes in the jet streams are also poorly captured. However, changes in the tropics are more realistic, particularly the changes in tropical temperatures over the oceans. Although these results are preliminary in nature, because of the limited number of LGM simulations currently available, they nevertheless point to the utility of using paleoclimate simulations to understand the mechanisms of climate change and evaluate model performance.

Description: Keypoints This contribution is a reply on a comment submitted by A. Argnani. The alternate interpretation of the wide-angle seismic model is discussed. The Alfeo Fault system is proposed to be the current location of STEP fault. Abstract Andrea Argnani in his comment on Dellong et al., 2020 (Geometry of the deep Calabrian subduction (Central Mediterranean Sea) from wide‐angle seismic data and 3D gravity modeling), proposes an alternate interpretation of the wide-angle seismic velocity models presented by Dellong et al., 2018 and Dellong et al., 2020 and proposes a correction of the literature citations in these paper. In this reply, we discuss in detail all points raised by Andrea Argnani.