ALBERT

Description: Numerical simulation is important for practical and efficient assessment of hydrate reservoir formation stability and gas production potential. The history-matching simulation of hydrate gas production tests is complex due to coupled THM (thermo-hydro-mechanical) phenomena. The well log data from the Eastern Nankai Trough methane gas production site suggest vertically heterogeneous field properties. In the previous numerical simulation research of this site, the heterogeneous geological data were homogenized by adopting the standard mean-field theory, which can potentially lead to inaccurate simulation results due to the mesh size effect. By introducing new upscaling techniques for the permeability profiles and mechanical responses, a revised homogenization approach is proposed to improve the coupled THM simulation accuracy. In this study, seven gas production simulations of a hypothetical reservoir, six simulations of the Eastern Nankai Trough gas production test, and four simulations of the randomly generated site formation production test with different mesh sizes and different homogenization approaches were carried out to demonstrate that the proposed upscaling techniques can improve the accuracy of the simulation results with a coarse mesh model. This work, in turn, provides researchers and field engineers a much quicker way to assess the complex geomechanical behaviors of hydrate gas production site.

Description: Nitrous oxide is an important greenhouse gas and there is a need for sensitive techniques to study its distribution in the environment at concentrations near equilibrium with the atmosphere (9.6 nM in water at 20 °C). Here we present an electrochemical sensor that can quantify N2O in the nanomolar range. The sensor principle relies on a front guard cathode placed in front of the measuring cathode. This cathode is used to periodically block the flux of N2O towards the measuring cathode, thereby creating an amplitude in the signal. This signal amplitude is unaffected by drift in the baseline current and can be read at very high resolution, resulting in a sensitivity of 2 nM N2O for newly constructed sensors. Interference from oxygen is prevented by placing the front guard cathode in oxygen-consuming electrolyte. The sensor was field tested by measuring an N2O profile to a depth of 120 m in the oxygen minimum zone of the Eastern Tropical North Pacific Ocean (ETNP) off the coast of Mexico.

Description: It is generally assumed that seismic activity at volcanoes is closely connected to degassing processes. Intuitively, one would therefore expect a good correlation between degassing rates and seismic amplitude. However, both examples and counterexamples of such a correlation exist. In this study on Villarrica volcano (Chile), we pursued a different approach to relate gas flux and volcanic seismicity using 3 months of SO$_2$ flux rate measurements and 12 days of seismic recordings from early 2012.〈br /> We analyzed the statistical distributions of interevent times between transient seismic waveforms commonly associated with explosions and between peaks in the degassing time series.〈br /> Both event types showed a periodic recurrence with a mode of 20-25 s and around 1 h for transients and degassing, respectively. The normalized interevent times were fitted by almost identical log-normal distributions. Given the actually very different time scales, this similarity potentially indicates a scale-invariant phenomenon. We could reproduce these empirical findings by modelling the occurrence of transients as a renewal process from which the degassing events were derived recursively with increasing probability since the previous degassing event. In this model, the seismic transients could be either produced by degassing processes within the conduit or by gas release at the lava lake surface while the longer intervals of the degassing events may be explained by accumulation of gas either in the magma column or in the juvenile gas plume.〈br /> Additionally, we analyzed volcano-tectonic events, which behaved very differently from the transients. They showed the clustered occurrence of tectonic earthquakes.

Description: The ability of consumers to convert ingested carbon into growth is critical for secondary production and trophic transfer. We conducted laboratory experiments to investigate the effect of different prey and concentration on the ingestion rate (IR), egg production rate (EPR) and egg production efficiency (EPE) of the ubiquitous copepod, Acartia tonsa. Experiments were run at several prey concentrations, ranging from 11 to 1132 μgC L–1, of the diatom Thalassiosira weissflogii, the autotrophic dinoflagellate Prorocentrum minimum, the heterotrophic dinoflagellate Oxyrrhis sp., the flagellate Dunaliella tertiolecta, and the bacterivorous scuticociliate Uronema sp. IR increased curvilinearly with concentration for all diets. EPR also increased curvilinearly with increasing food concentration similar to IR, with the exception of the flagellate diet, for which EPR decreased linearly with food concentration. EPR ranked as T. weissflogii 〉 P. minimum 〉 Oxyrrhis sp. = Uronema sp. 〉 D. tertiolecta. IR and EPR were linearly related, except for flagellate diet. The slope of the carbon-based relationship between IR and EPR, the egg production efficiency (EPE), was highest for the diatom (77.5%) and lowest for the scuticociliate (4.2%). Egg production was not correlated to ingestion of the flagellate offered to A. tonsa. We conclude that of the five prey species, the diatom T. weissflogii is the best prey to promote A. tonsa reproduction, to optimize trophic transfer efficiency, and to increase mass cultivation of this species.

Description: Geochemical patterns in the environment are always the result of certain processes. Therefore, it is essential to decipher a process to properly evaluate the environmental role and potential of chemical elements/compounds. This allows the distinction between natural and anthropogenic influence on elemental concentrations. However, if the compositional nature of geochemical data is neglected, erroneous or misleading conclusions regarding the processes involved are probable. In this study the reconstruction of depositional environments and processes through the Holocene in two sediment cores obtained from submerged sinkholes located on the island of Mljet, Croatia, was performed by taking into account the compositional nature of geochemical, mineralogical and grainsize data. Problems involving compositional data are always multivariate; for example, the concentration of a single element does not carry any interpretative information, as only the ratios between elements do. This has led to the discovery of a large number of geochemical proxies based on elemental ratios, which describe certain environmental conditions and processes involved. Nevertheless, some proxies have been found to be restricted to only some specific environments, thus preventing them from being used in general; therefore, some kind of relation between different proxies is necessary to obtain final conclusions. However, when using simple elemental ratios, those correlations cannot be obtained due to the nature of compositional data. With a sequential binary partition of a compositional vector, orthonormal log ratio (olr) coordinates (proxies) can be constructed. When based on expert knowledge, those proxies fully acknowledge the geochemical properties of the chosen elements with one major difference - that the correlation between newly obtained variables is mathematically well grounded. As a result, the final conclusion is more accurate. In this research, geochemical proxies obtained as a representation in olr coordinates of the elements that are enriched compared to the local soil were used to perform principal component analyses. It helped to unravel the evolution of sedimentary environments. Mineralogical (XRD and heavy mineral data) and grain size analyses supported the conclusions obtained based solely on geochemical data. Furthermore, data analysis suggests that the proxies for redox conditions described in the literature should be used with caution, as their use is somewhat limited.

Description: Proteobacteria Alphaproteobacteria Rhizobiales Hyphomicrobiaceae Blas.to.chlo'ris. Gr. masc. n. blastos bud shoot; Gr. masc. adj. chloros green; N.L. fem. n. Blastochloris green bud shoot. Proteobacteria / Alphaproteobacteria / Rhizobiales / Hyphomicrobiaceae / Blastochloris Blastochloris species are anoxygenic phototrophic Alphaproteobacteria that have bacteriochlorophyll b in their photosynthetic reaction centers. Crystals of the photosynthetic reaction centers of Blastochloris viridis were the first that have been studied in high‐resolution structure analysis at 3 Å resolution. Internal photosynthetic membranes are present as lamellae underlying and parallel to the cytoplasmic membrane. Cells are rod shaped to ovoid and exhibit polar growth, budding, and asymmetric cell division and form rosette‐like cell aggregates. They are motile by means of subpolar flagella and stain Gram‐negative. Straight‐chain monounsaturated C18:1 is the predominant component of cellular fatty acids. Ubiquinones and menaquinones are present, and the lipopolysaccharides are characterized by a 2,3‐diamino‐2,3‐deoxy‐d‐glucose (DAG)‐containing, phosphate‐free lipid A with amide‐bound C14:0 3OH. DNA G + C content (mol%): 63.8–68.3. Type species: Blastochloris viridis (Drews and Giesbrecht 1966) Hiraishi 1997 (Rhodopseudomonas viridis Drews and Giesbrecht 1966).

Description: Warming air temperatures, shifting hydrological regimes and accelerating permafrost thaw in the catchments of the Arctic rivers is affecting their biogeochemistry. Arctic river monitoring is necessary to observe changes in the mobilization of dissolved organic matter (DOM) from permafrost. The Lena River is the second largest Arctic river and 71% of its catchment is continuous permafrost. Biogeochemical parameters, including temperature, electrical conductivity (EC), stable water isotopes, dissolved organic carbon (DOC) and absorption by colored dissolved organic matter (aCDOM) have been measured as part of a new high-frequency sampling program in the central Lena River Delta. The results show strong seasonal variations of all biogeochemical parameters that generally follow seasonal patterns of the hydrograph. Optical indices of DOM indicate a trend of decreasing aromaticity and molecular weight from spring to winter. High-frequency sampling improved our estimated annual fluvial flux of annual dissolved organic carbon flux (6.79 Tg C). EC and stable isotope data were used to distinguish three different source water types which explain most of the seasonal variation in the biogeochemistry of the Lena River. These water types match signatures of (1) melt water, (2) rain water, and (3) subsurface water. Melt water and rain water accounted for 84% of the discharge flux and 86% of the DOC flux. The optical properties of melt water DOM were characteristic of fresh organic matter. In contrast, the optical properties of DOM in subsurface water revealed lower aromaticity and lower molecular weights, which indicate a shift toward an older organic matter source mobilized from deeper soil horizons or permafrost deposits. The first year of this new sampling program sets a new baseline for flux calculations of dissolved matter and has enabled the identification and characterization of water types that drive the seasonality of the Lena River water properties.

Description: New antifungals are increasingly needed due to the emergence of resistant fungal strains. Traditional antifungal assays are laborious and require significant amounts of samples. The present work presents a new proposal to evaluate antifungal activity and antagonism among fungal species, based on experiments of fungal culture and co-culture, 1H NMR profile of fungal culture extracts and chemometrics. In order to develop the work, six axenic cultures of fungi that infested fruits (Fusarium guttiforme, Pestalotiopsis diospyri, Phoma caricae-papayae, Colletotrichum horii, Phytophthora palmivora, and C. gloeosporioides), and co-cultures of all possible combination among them were performed (totalizing 63 experiments). All fungal extracts were evaluated by 1H NMR followed by Principal Component Analyses (PCA) in order to determine spectral dissimilarity among the extracts. Results showed that 1H NMR data evaluated by PCA were capable to predict both antagonism and antifungal activity. Traditional antifungal in vitro assays of active and inactive extracts were also performed in order to prove the prediction made by PCA. The obtained data showed that the approach is an outstanding tool to simultaneously obtain and evaluate bioactive compounds because: it was able to predict the activity of five different extracts in a collection of sixty-three, which would be much more difficult and time consuming if applied randomly; most important antifungal extracts are indicated by PCA; hundreds of traditional in vitro assays are avoid; and, the method is very time and money saving.

Description: Highlights • Total modeled carbon cycling at disturbed sites is lower than at reference sites. • Projected microbial loop functioning is reduced 26 years after sediment disturbance. • Estimated faunal respiration has recovered from sediment disturbance. • Estimated microbial respiration has not recovered from the sediment disturbance. Abstract Due to the predicted future demand for critical metals, abyssal plains covered with polymetallic nodules are currently being prospected for deep-seabed mining. Deep-seabed mining will lead to significant sediment disturbance over large spatial scales and for extended periods of time. The environmental impact of a small-scale sediment disturbance was studied during the ‘DISturbance and reCOLonization’ (DISCOL) experiment in the Peru Basin in 1989 when 10.8 km2 of seafloor were ploughed with a plough harrow. Here, we present a detailed description of carbon-based food-web models constructed from various datasets collected in 2015, 26 years after the experiment. Detailed observations of the benthic food web were made at three distinct sites: inside 26-year old plough tracks (IPT, subjected to direct impact from ploughing), outside the plough tracks (OPT, exposed to settling of resuspended sediment), and at reference sites (REF, no impact). The observations were used to develop highly-resolved food-web models for each site that quantified the carbon (C) fluxes between biotic (ranging from prokaryotes to various functional groups in meio-, macro-, and megafauna) and abiotic (e.g. detritus) compartments. The model outputs were used to estimate total system throughput, i.e., the sum of all C flows in the food web (the ‘ecological size’ of the system), and microbial loop functioning, i.e., the C-cycling through the prokaryotic compartment for each site. Both the estimated total system throughput and the microbial loop cycling were significantly reduced (by 16% and 35%, respectively) inside the plough tracks compared to the other two sites. Site differences in modelled faunal respiration varied among the different faunal compartments. Overall, modelled faunal respiration appeared to have recovered to, or exceeded reference values after 26-years. The model results indicate that food-web functioning, and especially the microbial loop, have not recovered from the disturbance that was inflicted on the abyssal site 26 years ago.

Description: Highlights: • Crystal structure of the malaria parasite lipocalin • Comparative analysis of lipocalin superfamily members in alveolate genomes • Localization of PfLipocalin to the parasitophorous vacuole and food vacuole • Reverse genetics reveal PfLipocalin function in oxidative damage control Summary: Proteins of the lipocalin family are known to bind small hydrophobic ligands and are involved in various physiological processes ranging from lipid transport to oxidative stress responses. The genome of the malaria parasite Plasmodium falciparum contains a single protein PF3D7_0925900 with a lipocalin signature. Using crystallography and small-angle X-ray scattering, we show that the protein has a tetrameric structure of typical lipocalin monomers; hence we name it P. falciparum lipocalin (PfLCN). We show that PfLCN is expressed in the intraerythrocytic stages of the parasite and localizes to the parasitophorous and food vacuoles. Conditional knockdown of PfLCN impairs parasite development, which can be rescued by treatment with the radical scavenger Trolox or by temporal inhibition of hemoglobin digestion. This suggests a key function of PfLCN in counteracting oxidative stress-induced cell damage during multiplication of parasites within erythrocytes.