ALBERT

Description: Geoengineering is regarded by advocates as a creative and responsible technological option in the face of a climate emergency. Critics often see it as a hubristic attempt to play God, with disastrous consequences for the planet and humanity. These antipodal perspectives are represented by the ideal types of Prometheans and Gaians. Prometheans and Gaians typically talk past each other. The geoengineering debate can be made more fruitful by well articulating their respective positions and subsequently situating them in the discourse of sustainability. A sustainability orientation does not answer the troubling question whether geoengineering should be developed and deployed. But it can foster a ‘fusion of horizons’ between Prometheans and Gaians, providing common ground in an otherwise polarized debate and making a more productive dialogue possible.

Description: Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available. © 2018 International Society of Protistologists

Description: Spores of the dinoflagellate Chytriodinium are known to infest copepod eggs causing their lethality. Despite the potential to control the population of such an ecologically important host, knowledge about Chytriodinium parasites is limited: we know little about phylogeny, parasitism, abundance, or geographical distribution. We carried out genome sequence surveys on four manually isolated sporocytes from the same sporangium, which seemed to be attached to a copepod nauplius, to analyze the phylogenetic position of Chytriodinium based on SSU and concatenated SSU/LSU rRNA gene sequences, and also characterize two genes related to the plastidial heme pathway, hemL and hemY. The results suggest the presence of a cryptic plastid in Chytriodinium and a photosynthetic ancestral state of the parasitic Chytriodinium/Dissodinium clade. Finally, by mapping Tara Oceans V9 SSU amplicon data to the recovered SSU rRNA gene sequences from the sporocytes, we show that globally, Chytriodinium parasites are most abundant within the pico/nano- and mesoplankton of the surface ocean and almost absent within microplankton, a distribution indicating that they generally exist either as free-living spores or host-associated sporangia. © 2018 International Society of Protistologists

Description: Hydroacoustic and optical remote sensing have been commonly used to map shallow nearshore benthic features. However, the number, type, scale, and accuracy of the mapping products that can be obtained from the two sensors differ; as such, there can be limited agreement between their mapping products. These differences can be further accentuated if the hydroacoustic data are interpolated to produce a map. Interpolation introduces spatial uncertainty and reduces map accuracy. Consequently, maps generated from the two sensors may provide dissimilar spatial and temporal representations of the same benthic features. We therefore compared the performance of a random forest regression (RFr) and a universal kriging (UK) interpolation method and a post-classification enhancement that can be used to increase the accuracy and complementarity of benthic habitat maps derived from hydroacoustic data. First, we used single beam echosounder (SBES) survey bathymetry data from the Bluefields Bay marine protected area (MPA) in western Jamaica (13.82 km2 in size), to create a bathymetric surface model (BSM), from which rugosity and bathymetric position index (BPI) maps were generated. Next, the RFr was used to create submerged aquatic vegetation (SAV) percentage cover maps from the SBES SAV cover data by predicting cover at un-sampled locations. Predictors included auxiliary data such as depth, BPI, survey points coordinates and radiometrically corrected, deglinted and water column corrected image reflectance index values from each of the following: WorldView-2, Geoeye-1 and Landsat 8. Additionally, a SAV map was created using the UK. The most accurate SAV cover thresholds were identified and were used to create binary maps from the RFr and UK maps. A rugosity derived coral reef map was then added to the binary maps. The resulting benthic habitat maps had comparable accuracies and class coverage to benthic maps classified from GeoEye-1 and WorldView-2 images using pixel and object-based classifiers. However, map accuracies were calculated using a suboptimal number of reference points (〈50) for two of the benthic map classes (SAV absent and coral reef). This was not considered to be problematic as the addition of the coral reef class to the binary maps resulted in a significant decrease in uncertainty (standard error and confidence interval width of the overall accuracy) and a significant increase in the user’s accuracy of the SAV absent map class. Also, the difference in uncertainty and accuracy between the map classes did not change. The methods used in this study can therefore be used to increase the accuracy (and to decrease the uncertainty) and the complementarity of maps derived from hydroacoustic data.

Description: A series of triaxial compression tests of frozen sandy soil are carried out under five confining pressures (1 MPa, 4 MPa, 6 MPa, 8 MPa and 10 MPa) at –6 °C. By comparing the grain size distribution curves of frozen sandy soil before and after shearing, it is found that significant particle breakage can occur during triaxial shearing. Particle breakage changes internal structure of geomaterials and has a significant effect on their stress–strain relationships. In order to accurately describe the effect of particle breakage of frozen sandy soil on the stress–strain relationships, an elastoplastic constitutive model for frozen sandy soil considering particle breakage is proposed. Based on the energy balance equation established by Indraratna and Salim, the constant critical state stress ratio (Mcr) in the energy balance equation is modified to the stress ratio (M) which changed with shear strain during the shearing process. A yield function, considering particle breakage, is proposed using the modified energy balance equation. The hardening law is determined based on the rebound test results of frozen sandy soil, and the associated flow rule is adopted in the model. Compared with experimental data, the model can well simulate the stress–strain relationships under different confining pressures for frozen sandy soil. • Highlights • The particle breakage characteristics of frozen sandy soil are studied. • The energy balance equation considering particle breakage is modified to calculate the energy dissipation of frozen sandy soil. • An elastoplastic constitutive model for frozen sandy soil considering particle breakage is proposed.

Description: Surfactant-mediated extraction (SME), pressurized liquid extraction (PLE), and enzyme-assisted extraction (EAE) have been compared to improve the isolation of phlorotannins from the brown algae Lobophora variegata. Enzymatic treatment with Alcalase 2.4 L FG, Carezyme 4500 L, protease from Streptomyces griseus, pectinase from Aspergillus niger, Celluclast 1.5 L, protease from Bacillus licheniformis; surfactant extraction with triacetin and guaiacol and PLE with ethanol:water as extracting solvent, have been studied in terms of total phenolic content by the Folin–Ciocalteu method and total phlorotannin content using the DMBA assay. The results showed that SME yields the highest amount of phenols and phlorotannins by using food grade guaiacol as the surfactant. An extraction protocol was developed to maximize the amount of extract obtained from L. variegata. The effects of various parameters such as the type of surfactant, efficacy of surfactant, and optimum pH, on the extraction efficiency of polyphenols were examined. The simultaneous use of the enzyme and surfactant was also investigated. However, a synergistic effect between the enzymes and the surfactant for the extraction of polyphenols has not been observed. Considering total phenols and total phlorotannins in the extract, the extraction yield were obtained for total phenols as SME 〉 EAE 〉 PLE and for total phlorotannins as SME 〉 PLE 〉 EAE.

Description: The Ponto-Caspian round goby (Neogobius melanostomus Pallas, 1814) is a prominent invasive species in many European waters. Eggs of the Western Baltic Spring Spawning Atlantic herring might be attractive prey for the invasive round goby during the spawning season. However, investigations of the small fish fauna in an important spawning area of herring, which was characterized by high densities of macrophytes, indicated a spatio-temporal mismatch of round goby and herring spawn in spring, at least on some of the known important spawning beds situated on vegetated sandy bottoms. In contrast, a spatio-temporal overlap between round gobies and herring spawn was observed in a more structured area, characterized with stones, where round gobies’ stomachs were sampled. Further field study results suggest that large round gobies (〉 10 cm) do not feed on herring eggs, while smaller round gobies (〈 10 cm) do so. To support these results, we conducted laboratory feeding experiments with round gobies. When C. crangon, M. edulis and herring eggs were offered simultaneously, round gobies preferred C. crangon. M. edulis was preferred over herring eggs when C. crangon was absent. The predatory impact of the round goby on herring eggs seems to be of minor importance compared to other species, such as three-spined stickleback or perch. Applying the same data, different food ‘preference indices’ revealed a discrepancy in preference between indices. Therefore, we propose a modified food preference index (mE), taking into account four important parameters and combining benefits of two commonly applied indices.

Description: Gas hydrates continue to attract enormous attention throughout the energy industry, as both a hindrance in conventional production and a substantial unconventional resource. Scientists continue to be fascinated by the hydrates’ ability of sequestering large amounts of hydrophobic gases, unusual thermal transport properties and unique molecular structures. Technologically, clathrate hydrates promise advantages in applications as diverse as carbon sequestration and water desalination. The communities interested in hydrates span traditional academic disciplines, including earth science, physical chemistry and petroleum engineering. The studies on this field are equally diverse, including field expeditions to attempt the production of natural gas from hydrate deposits accumulated naturally on the seafloor, to lab-scale studies to exchange CO2 for CH4 in hydrates; from theoretical studies to understand the stability of hydrates depending on the guest molecules, to molecular simulations probing nucleation mechanisms. This review highlights a few fundamental questions, with focus on knowledge gaps representing some of the barriers that must be addressed to enable growth in the practical applications of hydrate technology, including natural gas storage, water desalination, CO2 – CH4 exchange in hydrate deposits and prevention of hydrate plugs in conventional energy transportation.

Description: Heteroplasmy occurs when copies of an organellar genome (plastid or mitochondrial) differ from one another either within a cell or among cells within an individual. This phenomenon was first discovered in plastids over 100 years ago, though ‘heteroplasmy’ was not formally defined until decades later. Mitochondrial and plastid heteroplasmy have since been discovered in diverse taxa, including numerous plants, particularly those with the gynodioecious breeding system. Though heteroplasmy can arise through mutations in organellar genomes, biparental inheritance of organelles often generates heteroplasmy. This article is intended to summarise the cytoploid nature of organellar genomes and different aspects of mitochondrial and plastid heteroplasmy, from its discovery, to the development of detection methods. We will also discuss the effects of heteroplasmy on individuals, populations, and species, with regard to fitness, cytonuclear interactions, and genome evolution. Finally, we highlight a few research questions which we consider in need of further investigation to understand the prevalence and effects of heteroplasmy in natural settings.

Description: Fermentation plays a fundamental role in organic carbon degradation on a global scale. However, little is known about how environmental variables influence this process. In a step towards quantifying how temperature and composition influence fermentation, we have calculated the Gibbs energies of 47 fermentation reaction, ΔGr, from 0–150 °C for a broad range of compositions representing microbial habitats as variable as sediments, estuaries, soils, and crustal rocks. The organic compounds in these reactions include amino acids, nucleic acid bases, monosaccharides, carboxylates, methanogenic compounds and more. The amount of energy available varies considerably, from +54 kJ (mol C)−1 for palmitate fermentation, to −184 kJ (mol C)−1 for methylamine disproportionation. For some reactions, there is little difference in ΔGr between low and high energy systems (e.g., the monosaccharide reactions) while others span a much broader range (e.g., the nucleic acid bases). There is no clear-cut trend between exergonicity and temperature, and the values of standard state Gibbs energies of reactions, ΔG0r, for nearly half of the reactions lie outside the range of ΔGr values. To carry out some of these calculations, the thermodynamic properties for six organic compounds were estimated: dimethylamine, trimethylamine, resorcinol, phloroglucinol and cyclohexane carboxylate and its conjugate acid.