ALBERT

Note: Contents List of contributors Preface 1 Antarctic Climate Evolution - second edition 1.1 Introduction 1.2 Structure and content of the book Acknowledgements References 2 Sixty years of coordination and support for Antarctic science - the role of SCAR 2.1 Introduction 2.2 Scientific value of research in Antarctica and the Southern Ocean 2.3 The international framework in which SCAR operates 2.4 The organisation of SCAR 2.5 Sixty years of significant Antarctic science discoveries 2.6 Scientific Horizon Scan 2.7 Summary References Appendix 3 Cenozoic history of Antarctic glaciation and climate from onshore and offshore studies 3.1 Introduction 3.2 Long-term tectonic drivers and ice sheet evolution 3.3 Global climate variability and direct evidence for Antarctic ice sheet variability in the Cenozoic 3.3.1 Late Cretaceous to early Oligocene evidence of Antarctic ice sheets and climate variability 3.3.2 The Eocene-Oligocene transition and continental-scale glaciation of Antarctica 3.3.3 Transient glaciations of the Oligocene and Miocene 3.3.4 Pliocene to Pleistocene 3.4 Regional seismic stratigraphies and drill core correlations, and future priorities to reconstruct Antarctica's Cenozoic 3.4.1 Ross Sea 3.4.2 Amundsen Sea 3.4.3 Bellingshausen Sea and Pacific coastline of Antarctic Peninsula 3.4.4 The Northern Antarctic Peninsula and South Shetland Islands 3.4.5 The Eastern Margin of the Antarctic Peninsula 3.4.6 The South Orkney Microcontinent and adjacent deep-water basins 3.4.7 East Antarctic Margin 3.4.7.1 Weddell Sea 3.4.7.1.1 Gondwana break-up, Weddell Sea opening and pre-ice-sheet depositional environment 3.4.7.1.2 The Eocene-Oligocene transition and paleoenvironment during increasing glacial conditions 3.4.7.1.3 Recent geophysical survey beneath the Ekström Ice Shelf and future directions for drilling 3.4.7.2 Prydz Bay 3.4.7.2.1 Early Cenozoic greenhouse and earliest glacial phase in late Eocene 3.4.7.2.2 Oligocene-Miocene ice-sheet development 3.4.7.2.3 The Polar Ice Sheet (late Miocene(?)-Pleistocene) 3.4.7.3 East Antarctic Margin - Sabrina Coast 3.4.7.4 Wilkes Land margin and Georges V Land 3.5 Summary, future directions and challenges Acknowledgements References 4 Water masses, circulation and change in the modern Southern Ocean 4.1 Introduction 4.1.1 Defining the Southern Ocean 4.2 Water masses - characteristics and distribution 4.2.1 Upper ocean 4.2.2 Intermediate depth waters 4.2.3 Deep water 4.2.4 Bottom water 4.3 Southern Ocean circulation 4.3.1 Antarctic Circumpolar Current (ACC) 4.3.2 Southern Ocean meridional overturning circulation (SOMOC) 4.3.3 Deep western boundary currents 4.3.3.1 Pacific deep western boundary current 4.3.3.2 Indian deep western boundary currents 4.3.3.3 Atlantic deep western boundary current 4.3.4 Subpolar circulation - gyres, slope and coastal currents 4.3.4.1 Gyres 4.3.4.2 Antarctic slope and coastal currents 4.4 Modern Southern Ocean change 4.4.1 Climate change 4.4.2 Ocean change 4.4.3 Change in dynamics and circulation 4.5 Concluding remarks References 5 Advances in numerical modelling of the Antarctic ice sheet 5.1 Introduction and aims 5.2 Advances in ice sheet modelling 5.2.1 Grounding line physics 5.2.2 Adaptive grids 5.2.3 Parallel ice sheet model - PISM 5.2.4 Coupled models 5.3 Model input - bed data 5.4 Advances in knowledge of bed processes 5.5 Model intercomparison 5.6 Brief case studies 5.7 Future work References 6 The Antarctic Continent in Gondwana: a perspective from the Ross Embayment and Potential Research Targets for Future Investigations 6.1 Introduction 6.2 The Antarctic plate and the present-day geological setting of the Ross Embayment 6.3 East Antarctica 6.3.1 The Main Geological Units during the Paleoproterozoic-Early Neoproterozoic Rodinia Assemblage 6.3.2 From Rodinia breakup to Gondwana (c. 800-650 Ma) 6.3.3 The 'Ross Orogen' in the Transantarctic Mountains during the late Precambrian-early Paleozoic evolution of the paleo-Pacific margin of Gondwana (c. 600-450 Ma) 6.4 West Antarctic Accretionary System 6.4.1 West Antarctica in the Precambrian to Mesozoic (c. 180 Ma) evolution of Gondwana until the middle Jurassic breakup 6.4.1.1 Precambrian to Cambrian metamorphic basement 6.4.1.2 Devono-Carboniferous arc magmatism ('Borchgrevink Event') (c. 370-350 Ma) 6.4.1.3 Beacon Supergroup (Devonian-Permo-Triassic-earliest Jurassic) 6.4.1.4 The Ellsworth-Whitmore Mountains Terrane and the Permo-Triassic arc magmatism 6.4.1.5 Ferrar Supergroup and the Gondwana breakup (c. 180Ma) 6.4.1.6 The Antarctic Andean Orogen 6.5 Mesozoic to Cenozoic Tectonic Evolution of the Transantarctic Mountains 6.6 Tectonic evolution in the Ross Sea Sector during the Cenozoic 6.7 Concluding remarks, open problems and potential research themes for future geoscience investigations in Antarctica 6.7.1 Persistent challenges for onshore geoscience investigations 6.7.2 Antarctica and the Ross Orogen in the Transantarctic Mountains 6.7.3 Antarctica after Gondwana fragmentation Acknowledgements References 7 The Eocene-Oligocene boundary climate transition: an Antarctic perspective 7.1 Introduction 7.2 Background 7.2.1 Plate tectonic setting 7.2.2 Antarctic paleotopography 7.2.3 Paleoceanographic setting 7.2.4 Global average and regional sea level response 7.2.5 Proxies to reconstruct past Antarctic climatic and environmental evolution 7.2.6 Far-field proxies 7.3 Antarctic Sedimentary Archives 7.3.1 Land-based outcrops 7.3.1.1 Antarctic Peninsula Region 7.3.1.2 King George (25 de Mayo) Island, South Shetland Islands 7.3.1.3 The Ross Sea Region 7.3.2 Sedimentary archives from drilling on the Antarctic Margin 7.3.2.1 Drill cores in the western Ross Sea 7.3.2.2 The Prydz Bay Region 7.3.2.3 Weddell Sea 7.3.2.4 Wilkes Land 7.4 Summary of climate signals from Antarctic sedimentary archives 7.4.1 Longer-term changes 7.4.2 The climate of the Eocene-Oligocene transition 7.5 The global context of Earth and climate system changes across the EOT 7.5.1 Climate modelling 7.5.2 Relative sea-level change around Antarctica 7.6 Summary 7.6.1 Early-middle Eocene polar warmth 7.6.2 Late Eocene cooling 7.6.3 Eocene-Oligocene transition Acknowledgements References 8 Antarctic Ice Sheet dynamics during the Late Oligocene and Early Miocene: climatic conundrums revisited 8.1 Introduction 8.2 Oligocene-Miocene Transition in Antarctic geological records and its climatic significance 8.3 Conundrums revisited 8.3.1 What caused major transient glaciation of Antarctica across the OMT? 8.3.2 Apparent decoupling of Late Oligocene climate and ice volume? 8.4 Concluding remarks Acknowledgements References 9 Antarctic environmental change and ice sheet evolution through the Miocene to Pliocene - a perspective from the Ross Sea and George V to Wilkes Land Coasts 9.1 Introduction 9.1.1 Overview and relevance 9.1.2 Far-field records of climate and ice sheet variability 9.1.2.1 The Early Miocene 9.1.2.2 The mid-Miocene 9.1.2.3 The Late Miocene 9.1.2.4 The Pliocene 9.1.3 Southern Ocean Paleogeography and Paleoceanography 9.1.4 Land elevation change and influences on Antarctic Ice Sheet evolution 9.2 Records of Miocene to Pliocene climate and ice sheet variability from the Antarctic margin 9.2.1 Introduction to stratigraphic records 9.2.2 George V Land to Wilkes Land Margin 9.2.2.1 Geological setting 9.2.2.2 Oceanography of the Adelie coast 9.2.2.3 Seismic stratigraphy off the George V Land to Wilkes Land Margin 9.2.2.4 Drill core records from the George V Land to Wilkes Land Margin 9.2.2.5 Neogene history of the George V Land to Wilkes Land margin 9.2.3 The Ross Sea Embayment and Southern Victoria Land 9.2.3.1 Geological setting 9.2.3.2 Oceanography and climate in the Ross Sea Region 9.2.3.3 Seismic stratigraphic records in the Ross Sea 9.2.3.4 Stratigraphic records from drill cores in the Ross Sea 9.2.3.5 Terrestrial records from Southern Victoria Land 9.2.3.6 Neogene history in the Ross Sea Region 9.3 Numerical modelling 9.3.1 Miocene

Note: Contents Part I The Algae Cell The Cell Cycle of Microalgae / Vilém Zachleder, Kateřina Bišová, and Milada Vítová Biosynthesis of the Cell Walls of the Algae / David S. Domozych Part II The Fundamental Physiological Processes Photosynthesis and Light Harvesting in Algae / Anthony W. Larkum Carbon Acquisition by Microalgae / John Beardall and John A. Raven Fundamentals and Recent Advances in Hydrogen Production and Nitrogen Fixation in Cyanobacteria / Namita Khanna, Patrícia Raleiras, and Peter Lindblad Dark Respiration and Organic Carbon Loss / John A. Raven and John Beardall Part III Nutrients and Their Acquisition Combined Nitrogen / John A. Raven and Mario Giordano Nutrients and Their Acquisition: Phosphorus Physiology in Microalgae / Sonya T. Dyhrman Sulphur and Algae: Metabolism, Ecology and Evolution / Mario Giordano and Laura Prioretti Micronutrients / Antonietta Quigg Iron / Adrian Marchetti and Maria T. Maldonado Selenium in Algae / Hiroya Araie and Yoshihiro Shiraiwa Silicification in the Microalgae / Zoe V. Finkel Calcification / Alison R. Taylor and Colin Brownlee Part IV Algae Interactions with Environment Chemically-Mediated Interactions in Microalgae / Michael A. Borowitzka Coping with High and Variable Salinity: Molecular Aspects of Compatible Solute Accumulation / Martin Hagemann Effects of Global Change, Including UV and UV Screening Compounds / Richa, Rajeshwar P. Sinha, and Donat-P. Häder Part V Secondary Metabolites Lipid Metabolism in Microalgae / Inna Khozin-Goldberg Sterols in Microalgae / John K. Volkman Carotenoids / Einar Skarstad Egeland Exocellular Polysaccharides in Microalgae and Cyanobacteria: Chemical Features, Role and Enzymes and Genes Involved in Their Biosynthesis / Federico Rossi and Roberto De Philippis Algae Genome-Scale Reconstruction, Modelling and Applications / Cristiana G.O. Dal’Molin and Lars K. Nielsen Part VI Applications Algal Physiology and Large-Scale Outdoor Cultures of Microalgae / Michael A. Borowitzka Part VII Systematics and Taxonomy Systematics, Taxonomy and Species Names: Do They Matter? / Michael A. Borowitzka

Note: Contents Part I Organ and Tissue Mechanics Wood Cell Wall Structure and Organisation in Relation to Mechanics / Lennart Salmén Modelling, Evaluation and Biomechanical Consequences of Growth Stress Profiles Inside Tree Stems / Tancrède Alméras, Delphine Jullien and Joseph Gril Bending Stress in Plant Stems: Models and Assumptions / Christopher J. Stubbs, Navajit S. Baban, Daniel J. Robertson, Loay Alzube and Douglas D. Cook Tree Mechanics and Wind Loading / John Moore, Barry Gardiner and Damien Sellier Part II Growth, Morphogenesis and Motion The Mechanics of Leaf Growth on Large Scales / Eran Sharon and Michal Sahaf Twisting Growth in Plant Roots / Hirofumi Wada and Daichi Matsumoto Plants at Bodybuilding: Development of Plant “Muscles” / Tatyana Gorshkova, Polina Mikshina, Anna Petrova, Tatyana Chernova, Natalia Mokshina and Oleg Gorshkov Modeling Plant Morphogenesis: An Introduction / Anne-Lise Routier-Kierzkowska and Adam Runions Mechanical Conflicts in Growth Heterogeneity / Nathan Hervieux and Olivier Hamant Folding, Wrinkling, and Buckling in Plant Cell Walls / Dorota Borowska-Wykręt and Dorota Kwiatkowska Structural Principles in the Design of Hygroscopically Moving Plant Cells / Rivka Elbaum Using Modeling to Understand the Hygromechanical and Hysteretic Behavior of the S2 Cell Wall Layer of Wood / Dominique Derome, Karol Kulasinski, Chi Zhang, Mingyang Chen and Jan Carmeliet Part III Molecular Underpinnings of Cell Wall Mechanics Calcium–Pectin Chemistry and Biomechanics: Biological Background and Mathematical Modelling / Mariya Ptashnyk and Henry R. Allen Cell Wall Expansion as Viewed by the Creep Method / Dmitry Suslov and Kris Vissenberg Tensile Testing of Primary Plant Cells and Tissues / Amir J. Bidhendi and Anja Geitmann Part IV Water Transport, Mechanosensing and Biomimetics Water Motion and Sugar Translocation in Leaves / Tomas Bohr, Hanna Rademaker and Alexander Schulz Molecular Mechanisms of Mechanosensing and Mechanotransduction / Masatsugu Toyota, Takuya Furuichi and Hidetoshi Iida Biomechanics and Functional Morphology of Plants—Inspiration for Biomimetic Materials and Structures / Thomas Speck, Georg Bold, Tom Masselter, Simon Poppinga, Stefanie Schmier, Marc Thielen and Olga Speck Index

Note: Contents Chapter 1. Introduction to the Landscapes and Landforms of Italy (Mauro Soldati) -- Part I: Physical Environment -- Chapter 2. The Great Diversity of Italian Landscapes and Landforms: Their Origin and Human Imprint (Mauro Marchetti) -- Chapter 3. Outline of the Geology of Italy (Alfonso Bosellini) -- Chapter 4. The Climate of Italy (Simona Fratianni) -- Chapter 5. Morphological Regions of Italy (Paola Fredi) -- Part II: Landscapes and Landforms. Chapter 6. The Glaciers of the Valle d’Aosta and Piemonte Regions: Records of Present and Past Environmental and Climate Changes (Marco Giardino) -- Chapter 7. Landscapes of Northern Lombardy: From the Glacial Scenery of Upper Valtellina to the Prealpine Lacustrine Environment of Lake Como (Irene Bollati) -- Chapter 8. The Adamello-Presanella and Brenta Massifs, Central Alps: Contrasting High-mountain Landscapes and Landforms (Alberto Carton) -- Chapter 9. Large Ancient Landslides in Trentino, Northeastern Alps, as Evidence of Post-glacial Dynamics (Alberto Carton) -- Chapter 10. The Dolomite Landscape of the Alta Badia (Northeastern Alps): A Remarkable Record of Geological and Geomorphological History (Mauro Marchetti) -- Chapter 11. The Vajont Valley (Eastern Alps): A Complex Landscape Deeply Marked by Landsliding (Alessandro Pasuto) -- Chapter 12. Karst Landforms in Friuli Venezia Giulia: From Alpine to Coastal Karst (Franco Cucchi) -- Chapter 13. The Tagliamento River: The Fluvial Landscape and Long-term Evolution of a Large Alpine Braided River (Nicola Surian).-Chapter 14. Lake Garda: An Outstanding Archive of Quaternary Geomorphological Evolution (Carlo Baroni) -- Chapter 15. Geomorphological Processes and Landscape Evolution of the Lagoon of Venice (Aldino Bondesan) -- Chapter16. The Po Delta Region: Depositional Evolution, Climate Change and Human Intervention Through the Last 5,000 Years (Marco Stefani) -- Chapter 17. Landscapes and Landforms Driven by Geological Structures in the Northwestern Apennines (Luisa Pellegrini) -- Chapter 18. Fingerprints of Large-scale Landslides in the Landscape of the Emilia Apennines (Giovanni Bertolini) -- Chapter 19. Mud Volcanoes in the Emilia-Romagna Apennines: Small Landforms of Outstanding Scenic and Scientific Value (Doriano Castaldini) -- Chapter 20. The Outstanding Terraced Landscape of the Cinque Terre Coastal Slopes (Eastern Liguria) (Pierluigi Brandolini) -- Chapter 21. Tuscany Hills and Valleys: Uplift, Exhumation, Valley Downcutting and Relict Landforms (Mauro Coltorti) -- Chapter 22. Landscapes and Landforms of the Duchy of Urbino in Italian Renaissance Paintings (Olivia Nesci) -- Chapter 23. Rocky Cliffs Joining Velvet Beaches: The Northern Marche Coast (Daniele Savelli) -- Chapter 24. The Typical Badlands Landscapes Between the Tyrrhenian Sea and the Tiber River (Maurizio Del Monte) -- 25. The Tuff Cities: A ‘Living Landscape’ at the Border of Volcanoes in Central Italy (Claudio Margottin) -- Chapter 26. A Route of Fire in Central Italy: The Latium Ancient Volcanoes (Paola Fredi) -- Chapter 27. Relief, Intermontane Basins and Civilization in the Umbria-Marche Apennines: Origin and Life by Geological Consent (Marta Della Seta) -- Chapter 28. The Terminillo, Gran Sasso and Majella Mountains: The ‘Old Guardians’ of the Tyrrhenian and Adriatic Seas (Tommaso Piacentini) -- Chapter 29. Aeternae Urbis Geomorphologia - Geomorphology of Rome, Aeterna Urbs (Maurizio Del Monte) -- Chapter 30. Granite Landscapes of Sardinia: Long-term Evolution of Scenic Landforms (Rita T. Melis) -- Chapter 31. The Coastal Dunes of Sardinia: Landscape Response to Climate and Sea Level Changes (Rita T. Melis) -- Chapter 32. The Terrestrial and Submarine Landscape of the Tremiti Archipelago, Adriatic Sea (Enrico Miccadei) -- Chapter 33. Vesuvius and Campi Flegrei: Volcanic History, Landforms and Impact on Settlements (Pietro P.C. Aucelli) -- Chapter 34. Sorrento Peninsula and Amalfi Coast: The Long-term History of an Enchanting Promontory (Aldo Cinque) -- Chapter 35. The Coastal Landscape of Cilento (Southern Italy): A challenge for Protection and Tourism Valorisation (Alessio Valente) -- Chapter 36. The Salento Peninsula (Apulia, Southern Italy): A Water-shaped Landscape Without Rivers (Giuseppe Mastronuzzi) -- Chapter 37. The Landscape of the Aspromonte Massif: A Geomorphological Open-air Laboratory (Gaetano Robustelli) -- Chapter 38. Volcanic Landforms and Landscapes of the Aeolian Islands (Southern Tyrrhenian Sea, Sicily): Implications for Hazard Evaluation (Federico Lucchi) -- Chapter 39. Geomorphology of the Capo San Vito Peninsula (NW Sicily): An Example of Tectonically and Climatically Controlled Landscape (Valerio Agnesi) -- Chapter 40. Landforms and Landscapes of Mount Etna (Sicily): Relationships Between a Volcano, its Environment and Human Activity (Stefano Branca) -- Chapter 41. Pantelleria Island (Strait of Sicily): Volcanic History and Geomorphological Landscape (Silvio G. Rotolo) -- Part III: Geoheritage -- Chapter 42. Geoheritage in Italy (Maria Cristina Giovagnoli) -- Chapter 43. Geomorphodiversity in Italy: Examples from the Dolomites, Northern Apennines and Vesuvius (Mario Panizza) -- Chapter 44. Goethe’s Italian Journey and the Geological Landscape (Paola Coratza) -- Chapter 45. Wine Landscapes of Italy (Vincenzo Amato) -- Index

Note: Contents Part I Social Behavior in Rodents Conspecific Interactions in Adult Laboratory Rodents: Friends or Foes? / Michael Lukas and Trynke R. de Jong Recognizing Others: Rodent’s Social Memories / Judith Camats Perna and Mario Engelmann Social Odors: Alarm Pheromones and Social Buffering / Yasushi Kiyokawa Acoustic Communication in Rats: Effects of Social Experiences on Ultrasonic Vocalizations as Socio-affective Signals / Markus Wöhr, K. Alexander Engelhardt, Dominik Seffer, A. Özge Sungur and Rainer K.W. Schwarting From Play to Aggression: High-Frequency 50-kHz Ultrasonic Vocalizations as Play and Appeasement Signals in Rats / Theresa M. Kisko, Markus Wöhr, Vivien C. Pellis and Sergio M. Pellis The Psycho-Neurology of Cross-Species Affective/Social Neuroscience: Understanding Animal Affective States as a Guide to Development of Novel Psychiatric Treatments / Jaak Panksepp Social Reward and Empathy as Proximal Contributions to Altruism: The Camaraderie Effect / Garet P. Lahvis A Social Reinforcement Learning Hypothesis of Mutual Reward Preferences in Rats / Julen Hernandez-Lallement, Marijn van Wingerden, Sandra Schäble and Tobias Kalenscher Part II Social Behavior in Humans A Plea for Cross-species Social Neuroscience / Christian Keysers and Valeria Gazzola Models, Mechanisms and Moderators Dissociating Empathy and Theory of Mind / Philipp Kanske, Anne Böckler and Tania Singer Reward: From Basic Reinforcers to Anticipation of Social Cues / Lena Rademacher, Martin Schulte-Rüther, Bernd Hanewald and Sarah Lammertz Human Cooperation and Its Underlying Mechanisms / Sabrina Strang and Soyoung Q. Park The Social Neuroscience of Interpersonal Emotions / Laura Müller-Pinzler, Sören Krach, Ulrike M. Krämer and Frieder M. Paulus Deconstructing Anger in the Human Brain Gadi Gilam and Talma Hendler On the Control of Social Approach–Avoidance Behavior: Neural and Endocrine Mechanisms / Reinoud Kaldewaij, Saskia B.J. Koch, Inge Volman, Ivan Toni and Karin Roelofs Mapping Social Interactions: The Science of Proxemics / Cade McCall Part III Clinical Implications Genetic Animal Models for Autism Spectrum Disorder / Jan C. Schroeder, Dominik Reim, Tobias M. Boeckers and Michael J. Schmeisser Treatment Approaches in Rodent Models for Autism Spectrum Disorder / Susanna Pietropaolo, Wim E. Crusio and Francesca R. D’amato Neuroimaging-Based Phenotyping of the Autism Spectrum / Boris C. Bernhardt, Adriana Di Martino, Sofie L. Valk and Gregory L. Wallace Current Practice and Future Avenues in Autism Therapy / L. Poustka and I. Kamp-Becker The Social Context Network Model in Psychiatric and Neurological Diseases / Sandra Baez, Adolfo M. García and Agustín Ibanez Social-Cognitive Deficits in Schizophrenia Daniela Mier and Peter Kirsch The Programming of the Social Brain by Stress During Childhood and Adolescence: From Rodents to Humans / Stamatina Tzanoulinou and Carmen Sandi

Note: Contents 1 Crustaceans in the History of the Baltic Sea 2 The Baltic Sea: A Living Environment 2.1 Salinity 2.2 Temperature 2.3 Stagnation 2.4 Oxygenation 2.5 Bottom Sediments 2.6 The Impact of Human Activities 3 The Szczecin Lagoon and Pomeranian Bay 4 The Gulf of Gdan´ sk and Vistula Lagoon 5 The Gulf of Riga 6 The Gulf of Finland 7 The Gulf of Bothnia 8 General Characteristics of Malacostraca 9 Species Accounts 9.1 Mysidacea 9.1.1 Mysis mixta 9.1.2 Mysis relicta 9.1.3 Neomysis integer 9.1.4 Hemimysis anomala 9.1.5 Praunus flexuosus 9.1.6 Praunus inermis 9.2 Cumacea 9.2.1 Diastylis rathkei 9.3 Tanaidacea 9.3.1 Heterotanais oerstedi 9.4 Isopoda 9.4.1 Saduria entomon 9.4.2 Idotea chelipes 9.4.3 Idotea balthica 9.4.4 Idotea granulosa 9.4.5 Jaera albifrons 9.4.6 Jaera ischiosetosa 9.4.7 Jaera syei 9.4.8 Jaera praehirsuta 9.4.9 Lekanesphaera hookeri 9.4.10 Lekanesphaera rugicauda 9.4.11 Eurydice pulchra 9.4.12 Cyathura carinata 9.4.13 Asellus aquaticus aquaticus 9.5 Amphipoda 9.5.1 Hyperia galba 9.5.2 Gammarus locusta 9.5.3 Gammarus duebeni 9.5.4 Gammarus zaddachi 9.5.5 Gammarus oceanicus 9.5.6 Gammarus inequicauda 9.5.7 Gammarus salinus 9.5.8 Gammarus tigrinus 9.5.9 Pontogammarus robustoides 9.5.10 Obesogammarus crassus 9.5.11 Dikerogammarus haemobaphes 9.5.12 Dikerogammarus villosus 9.5.13 Chaetogammarus ischnus 9.5.14 Chaetogammarus stoerensis 9.5.15 Calliopius laeviusculus 9.5.16 Melita palmata 9.5.17 Melita nitida 9.5.18 Monoporeia affinis 9.5.19 Pontoporeia femorata 9.5.20 Bathyporeia pilosa 9.5.21 Leptocheirus pilosus 9.5.22 Talitrus saltator 9.5.23 Talorchestia deshayesii 9.5.24 Orchestia cavimana 9.5.25 Platorchestia platensis 9.5.26 Corophium crassicorne 9.5.27 Corophium lacustre 9.5.28 Corophium volutator 9.5.29 Corophium multisetosum 9.5.30 Chelicorophium curvispinum 9.5.31 Dyopedos monacanthus 9.6 Decapoda 9.6.1 Crangon crangon 9.6.2 Palaemon adspersus 9.6.3 Palaemon elegans 9.6.4 Palaemon macrodactylus 9.6.5 Palaemonetes varians 9.6.6 Rhithropanopeus harrisii 9.6.7 Eriocheir sinensis 9.6.8 Carcinus maenas 9.6.9 Orconectes limosus 9.6.10 Pacifastacus leniusculus Further Reading 10 Non-native Crustaceans 11 Function and Importance of Crustaceans Glossary Literature

Note: Contents 1 Seventh Law References 2 Shuram Excursion References 3 Clemente Biota References 4 Crystal Creature References 5 Trace Fossil Geometry References 6 Albion’s Ænigma References 7 Coelacanth Vestiges References 8 Barasaurus Squamation References 9 Tetrapteryx References 10 Zealanditherians References 11 Bifaces to the Ends of the Earth References 12 Feldspar Point References Systematics

Note: Contents Part I Introduction 1 Ecological Informatics: An Introduction / Friedrich Recknagel and William K. Michener Part II Managing Ecological Data 2 Project Data Management Planning / William K. Michener 3 Scientific Databases for Environmental Research / John H. Porter 4 Quality Assurance and Quality Control (QA/QC) / William K. Michener 5 Creating and Managing Metadata / William K. Michener 6 Preserve: Protecting Data for Long-Term Use / Robert B. Cook, Yaxing Wei, Leslie A. Hook, Suresh K.S. Vannan, and John J. McNelis 7 Data Discovery / William K. Michener 8 Data Integration: Principles and Practice / Mark Schildhauer Part III Analysis, Synthesis and Forecasting of Ecological Data 9 Inferential Modelling of Population Dynamics / Friedrich Recknagel, Dragi Kocev, Hongqing Cao, Christina Castelo Branco, Ricardo Minoti, and Saso Dzeroski 10 Process-Based Modeling of Nutrient Cycles and Food-Web Dynamics / George Arhonditsis, Friedrich Recknagel, and Klaus Joehnk 11 Uncertainty Analysis by Bayesian Inference / George Arhonditsis, Dong-Kyun Kim, Noreen Kelly, Alex Neumann, and Aisha Javed 12 Multivariate Data Analysis by Means of Self-Organizing Maps / Young-Seuk Park, Tae-Soo Chon, Mi-Jung Bae, Dong-Hwan Kim, and Sovan Lek 13 GIS-Based Data Synthesis and Visualization / Duccio Rocchini, Carol X. Garzon-Lopez, A. Marcia Barbosa, Luca Delucchi, Jonathan E. Olandi, Matteo Marcantonio, Lucy Bastin, and Martin Wegmann Part IV Communicating and Informing Decisions 14 Communicating and Disseminating Research Findings / Amber E. Budden and William K. Michener 15 Operational Forecasting in Ecology by Inferential Models and Remote Sensing / Friedrich Recknagel, Philip Orr, Annelie Swanepoel, Klaus Joehnk, and Janet Anstee 16 Strategic Forecasting in Ecology by Inferential and Process-Based Models / Friedrich Recknagel, George Arhonditsis, Dong-Kyun Kim, and Hong Hanh Nguyen Part V Case Studies 17 Biodiversity Informatics / Cynthia S. Parr and Anne E. Thessen 18 Lessons from Bioinvasion of Lake Champlain, U.S.A. / Timothy B. Mihuc and Friedrich Recknagel 19 The Global Lake Ecological Observatory Network / Paul C. Hanson, Kathleen C. Weathers, Hilary A. Dugan, and Corinna Gries 20 Long-Term Ecological Research in the Nakdong River: Application of Ecological Informatics to Harmful Algal Blooms / Dong-Gyun Hong, Kwang-Seuk Jeong, Dong-Kyun Kim, and Gea-Jae Joo 21 From Ecological Informatics to the Generation of Ecological Knowledge: Long-Term Research in the English Lake District / S.C. Maberly, D. Ciar, J.A. Elliott, I.D. Jones, C.S. Reynolds, S.J. Thackeray, and I.J. Winfield

Note: Contents 1 Introduction References Part I Mine Design, Mine Mapping and Sampling 2 Mining Methods 2.1 Open Pit Mines 2.2 Underground Mines 2.2.1 Underground Selective Mining Methods 2.2.2 Underground Bulk Mining Methods 2.2.3 Mining of the Gently Dipping Ore Bodies 2.3 Unconventional Mining 2.3.1 In situ Leach (ISL) Technique 2.3.2 Dredging of the Mineral Sands References 3 Mine Mapping 3.1 Mine Mapping Principles 3.2 Mapping Open Pit Mines 3.3 Mapping of Underground Mines 3.4 Mapping Using Digital Photogrammetry and Laser Technologies 3.4.1 Mapping Mining Faces Using Photogrammetry 3.4.2 Remote Mapping of the Mines Using Laser 3.5 Optimisation of the Mine Mapping Procedures References 4 Drilling Techniques and Drill Holes Logging 4.1 Drilling Methods 4.2 Diamond Core Drilling 4.2.1 Core Quality and Representativeness 4.2.2 Orientated Core 4.2.3 Logging Diamond Core Holes 4.2.4 Sampling Diamond Core 4.3 Open Hole Percussion Drilling 4.3.1 Sampling Blastholes for Grade Control Purpose in the Open Pits 4.3.2 Use of ‘Jumbo’ Drilling for Delineation of Underground Stopes 4.4 Reverse Circulation (RC) Percussion Drilling 4.4.1 Logging RC Holes 4.4.2 Sampling RC Holes 4.5 Sonic Drilling Technologies 4.5.1 Strength and Weakness of the Sonic Drilling 4.5.2 Logging and Sampling Sonic Drill Holes 4.6 Auger Drilling 4.7 Rotary Drilling Using Tricone Bit References 5 Sampling of the Mine Workings 5.1 Sampling Rock Faces in the Underground Mines 5.1.1 Channel Sampling 5.1.2 Rock Chip Sampling 5.2 Sampling of the Broken Ore 5.3 Trenching and Winzing References 6 Geotechnical Logging and Mapping 6.1 Geotechnical Logging of the Drill Core 6.1.1 Drilling Parameters and Core Recovery 6.1.2 Rock Weathering 6.1.3 Rock Strength 6.1.4 Rock Quality Designation Index (RQD) 6.1.5 Natural Breaks 6.2 Geotechnical Mapping 6.3 Geotechnical Applications of Rock Mass Classification Schemes References 7 Dry Bulk Density (DBD) of Rocks 7.1 Types of the Rock Densities Used in the Mining Industry 7.2 Dry Bulk Density Measurement Techniques 7.2.1 Competent Non-porous Rocks 7.2.2 Porous and Weathered Rocks 7.2.3 Non-consolidated Sediments 7.3 Spatial Distribution of the Rock Density Measurements References 8 Data Points Location (Surveying) 8.1 Surface Points Location 8.2 Down-Hole Survey Reference Part II Sampling Errors 9 Introduction to the Theory of Sampling 9.1 Types of Sampling Errors 9.2 Fundamental Sampling Error 9.2.1 Theoretical Background 9.2.2 Experimental Calibration of the Sampling 9.2.3 Sampling Nomogram 9.3 Grouping – Segregation Error 9.4 Errors Related to the Sampling Practices 9.5 Instrumental Errors References 10 Quality Control and Assurance (QAQC) 10.1 Accuracy Control 10.1.1 Statistical Tests for Assessing Performance of the Standard Samples 10.1.2 Statistical Tests for Assessing the Data Bias Using the Duplicate Samples 10.1.3 Diagnostic Diagram: Pattern Recognition Method 10.2 Precision Control 10.2.1 Matching Pairs of Data 10.2.2 Processing and Interpretation of Duplicate Samples 10.3 Comparative Analysis of the Statistical Estimation Methods 10.4 Guidelines for Optimisation of the Sampling Programmes 10.4.1 Planning and Implementation of the Sampling Programmes 10.4.2 Frequency of Inserting QAQC Material to Assay Batches 10.4.3 Distribution of the Reference Materials 10.4.4 Distribution of the Duplicate Samples References 11 Twin Holes 11.1 Method Overview 11.1.1 Objectives of the Twinned Holes Study 11.1.2 Statistical Treatment of the Results 11.1.3 Distance Between Twinned Holes 11.1.4 Drilling Quality and Quantity 11.1.5 Comparison of Studied Variables 11.1.6 Practice of Drilling Twinned Holes for Mining Geology Applications 11.2 Case Studies 11.2.1 Gold Deposits: Confirmation of High-Grade Intersections 11.2.2 Twin Holes Studies in Iron Ore Deposits 11.2.3 Mineral Sands Deposits: Validation of Historic Drilling 11.2.4 Bauxites: Use of Twin Holes as a Routine Control of Drilling Quality References 12 Database 12.1 Construction of the Database 12.2 Data Entry 12.2.1 Electronic Data Transfer 12.2.2 Keyboard Data Entry 12.2.3 Special Values 12.3 Management of the Data Flow 12.4 Database Safety and Security References Part III Mineral Resources 13 Data Preparation 13.1 Data Compositing 13.1.1 Data Coding 13.1.2 Compositing Algorithms 13.1.3 Choice of the Optimal Compositing Intervals 13.1.4 Validating of the Composited Assays 13.2 High Grade Cut-Off References 14 Geological Constraints of Mineralisation 14.1 Introduction to Wireframing 14.2 Characterisation of the Mineralisation Contacts 14.2.1 Contact Profile 14.2.2 Determining of the Cut-Off Value for Constraining Mineralisation 14.2.3 Contact Topography 14.2.4 Uncertainty of the Contacts 14.3 Geometry and Internal Structure of the Mineralised Domains 14.3.1 Unfolding References 15 Exploratory Data Analysis 15.1 Objective of the EDA 15.2 Overview of the EDA Techniques 15.2.1 Spider Diagram 15.2.2 Data Declustering 15.2.3 Q-Q Plots 15.2.4 Box-and-Whisker Plot (Box Plot) 15.3 Grouping and Analysis of the Data 15.3.1 Data Types 15.3.2 Data Generations 15.3.3 Grouping Samples by Geological Characteristics 15.4 Statistical Analysis of the Resource Domains References 16 Resource Estimation Methods 16.1 Polygonal Method 16.2 Estimation by Triangulation 16.3 Cross-Sectional Method 16.3.1 Extrapolation of the Cross-Sections 16.3.2 Interpolation Between Cross-Sections 16.4 Estimation by Panels 16.5 Inverse Distance Weighting Method References Part IV Applied Mining Geostatistics 17 Introduction to Geostatistics 17.1 Regionalised Variable and Random Function 17.2 Stationarity and Intrinsic Hypothesis References 18 Variography 18.1 Quantitative Analysis of the Spatial Continuity 18.2 Intuitive Look at Variogram 18.3 Geostatistical Definition of Variogram 18.4 Directional, Omnidirectional and Average Variograms 18.5 Properties of the Variograms 18.5.1 Behaviour Near Origin 18.5.2 Anisotropy 18.6 Analysis of the Data Continuity Using a Variogram Map 18.7 Presence of Drift 18.8 Proportional Effect 18.9 Variogram Sill and the Sample Variance 18.10 Impact of the Different Support 18.11 Variogram Models 18.11.1 Common Variogram Models 18.11.2 Modelling Geometric Anisotropy 18.11.3 Nested Structures 18.11.4 Modelling Zonal Anisotropy 18.12 Troublesome Variograms 18.12.1 Hole Effect 18.12.2 Saw-Tooth Shaped and Erratic Variograms 18.13 Alternative Measures of a Spatial Continuity 18.13.1 Variograms of the Gaussian Transformed Values 18.13.2 Relative (Normalised) Variograms 18.13.3 Different Structural Tools 18.14 Indicator Variograms 18.15 Variograms in the Multivariate Environment 18.15.1 Multivariate Geostatistical Functions 18.15.2 Linear Model of Coregionalisation References 19 Methods of the Linear Geostatistics (Kriging) 19.1 Geostatistical Resource Estimation 19.2 Kriging System 19.2.1 Ordinary Kriging 19.2.2 Simple Kriging 19.2.3 Simple Versus Ordinary Kriging 19.3 Properties of Kriging 19.3.1 Exactitude Property of Kriging 19.3.2 Negative Kriging Weights and Screening Effect 19.3.3 Smoothing Effect 19.3.4 Kriging Variance 19.3.5 Conditional Bias 19.4 Block Kriging 19.4.1 Blocks and Point Estimates 19.4.2 Kriging of the Small Blocks References 20 Multivariate Geostatistics 20.1 Theoretical Background of Multivariate Geostatistics 20.1.1 Ordinary Co-kriging 20.1.2 Collocated Co-kriging 20.1.3 Properties of the Co-kriging 20.2 Kriging with External Drift References 21 Multiple Indicator Kriging 21.1 Methodology of the Multiple Indicator Kriging 21.2 Practical Notes on the Indicators Post-Processing References 22 Estimation of the Recoverable Resources 22.1 Change of Support Concept 22.1.1 Dispersion Variance 22.1.2 Volume Variance Relations 22.1.3 Conditions for Change-of-Support Models 22.2 Global Change of Support Methods 22.2.1 Affine Correction 22.2.2 Discrete Gaussian Change of Support 22.3 Local Change of Support Methods 22.3.1 Uniform Conditioning 22.3.2 Localised Uniform Conditioning 22.3.3 Application of the LUC

Note: Contents 1 Nitrogen Excretion in Aquatic Crustaceans / Dirk Weihrauch, Sandra Fehsenfeld, and Alex Quijada-Rodriguez 2 Nitrogenous Waste Metabolism Within Terrestrial Crustacea, with Special Reference to Purine Deposits and Their Metabolism / Stuart M. Linton, Jonathan C. Wright, and Caitlin G. Howe 3 Gill Ion Transport ATPases and Ammonia Excretion in Aquatic Crustaceans / Francisco A. Leone, Malson N. Lucena, Daniela P. Garçon, Marcelo R. Pinto, and John C. McNamara 4 Nitrogen Excretion and Metabolism in Insects / M. J. O’Donnell and Andrew Donini 5 Nitrogen Excretion in Nematodes, Platyhelminthes, and Annelids / Alex R. Quijada-Rodriguez, Aida Adlimoghaddam, and Dirk Weihrauch 6 Acid–Base Regulation in Aquatic Decapod Crustaceans / Sandra Fehsenfeld and Dirk Weihrauch 7 Cell Biology of Reef-Building Corals: Ion Transport, Acid/Base Regulation, and Energy Metabolism / Martin Tresguerres, Katie L. Barott, Megan E. Barron, Dimitri D. Deheyn, David I. Kline, and Lauren B. Linsmayer 8 Acid–Base Regulation in Insect Haemolymph / Philip G.D. Matthews 9 Acid–Base Loops in Insect Larvae with Extremely Alkaline Midgut Regions / Horst Onken and David F. Moffett 10 pH Regulation and Excretion in Echinoderms / Meike Stumpp and Marian Y. Hu 11 Acid–Base Regulation and Ammonia Excretion in Cephalopods: An Ontogenetic Overview / Marian Hu and Yung-Che Tseng Service Part Index