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  • Articles  (15)
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  • 2010-2014  (15)
  • 1990-1994
  • 1980-1984
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  • 1
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    Wiley
    In:  EPIC3Journal of Geophysical Research-Earth Surface, Wiley, 115, pp. F04032, ISSN: 0148-0227
    Publication Date: 2016-11-14
    Description: Recent advances in three‐dimensional (3D) imaging of snow and firn combined with numerical modeling of flow through complex geometries have greatly improved the ability to predict permeability values based on microstructure. In this work, we combined 3D reconstructions of polar firn microstructure obtained from microcomputed tomography (mCT) and a 3D lattice‐Boltzmann (LB) model of air flow. We compared the modeled results to measurements of permeability for polar firn with a wide range of grain and pore‐scale characteristics. The results show good agreement between permeability measurements and calculated permeability values from the LB model over a wide range of sample types. The LB model is better at predicting measured permeability values than traditional empirical equations for polar firn.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
    Publication Date: 2017-04-04
    Description: Stress can undergo rapid temporal changes in volcanic environments, and this is particularly true during eruptions. We use two independent methods, coda wave interferometry (CWI) and shear wave splitting (SWS) analysis to track stress related wave propagation effects during the waning phase of the 2002 NE fissure eruption at Mt Etna. CWI is used to estimate temporal changes in seismic wave velocity, while SWS is employed to monitor changes in elastic anisotropy. We analyse seismic doublets, detecting temporal changes both in wave velocities and anisotropy, consistent with observed eruptive activity. In particular, syn-eruptive wave propagation changes indicate a depressurization of the system, heralding the termination of the eruption, which occurs three days later.
    Description: Published
    Description: 1779-1788
    Description: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Description: JCR Journal
    Description: reserved
    Keywords: Interferometry ; Seismic anisotropy ; Volcano seismology ; Volcano monitoring ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2017-04-04
    Description: Stromboli is a 3000 m high island volcano, rising to 900 m above sea-level. It is the most active volcano of the Aeolian Archipelago in the Tyrrhenian Sea (Italy). Major, large volume (1 km3) sector collapses, four occurring in the last 13 kyr, have played an important role in shaping the north-western flank (Sciara del Fuoco) of the volcano, potentially generating a high-risk tsunami hazard for the Aeolian Islands and the Italian coast. However, smaller volume, partial collapses of the Sciara del Fuoco have been shown to be more frequent tsunami-generating events. One such event occurred on 30 December 2002, when a partial collapse of the north-western flank of the island took place. The resulting landslide generated 10 m high tsunami waves that impacted the island. Multibeam bathymetry, side-scan sonar imaging and visual observations reveal that the landslide deposited 25 to 30 × 106 m3 of sediment on the submerged slope offshore from the Sciara del Fuoco. Two contiguous main deposit facies are recognized: (i) a chaotic, coarse-grained (metre-sized to centimetre-sized clasts) deposit; and (ii) a sand deposit containing a lower, cross-bedded sand layer and an upper structureless pebbly sand bed capped by sea floor ripple bedforms. The sand facies develops adjacent to and partially overlying the coarse deposits. Characteristics of the deposits suggest that they were derived from cohesionless, sandy matrix density flows. Flow rheology and dynamics led to the segregation of the density flow into sand-rich and clast-rich regions. A range of density flow transitions, both in space and in time, caused principally by particle concentration and grain-size partitioning within cohesionless parent flows was identified in the deposits of this relatively small-scale submarine landslide event.
    Description: Published
    Description: 1488-1504
    Description: 3.5. Geologia e storia dei vulcani ed evoluzione dei magmi
    Description: 4.3. TTC - Scenari di pericolosità vulcanica
    Description: JCR Journal
    Description: reserved
    Keywords: Flow transitions ; island volcano ; subaqueous cohesionless density flows ; submarine landslide deposits ; 04. Solid Earth::04.04. Geology::04.04.04. Marine geology ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
    Publication Date: 2017-04-04
    Description: A series of computer microtomography experiments are reported which were performed by using a third-generation synchrotron radiation source on volcanic rocks from various active hazardous volcanoes in Italy and other volcanic areas in the world. The applied technique allowed the internal structure of the investigated material to be accurately imaged at the micrometer scale and three-dimensional views of the investigated samples to be produced as well as three-dimensional quantitative measurements of textural features. Thegeometryof thevesicle (gas-filledvoid) network in volcanic products of both basaltic and trachytic compositions were particularly focused on, as vesicle textures are directly linked to the dynamics of volcano degassing. This investigation provided novel insights into modes of gas exsolution, transport and loss in magmas that were not recognized in previous studies using solely conventional two- dimensional imaging techniques. The results of this study are important to understanding the behaviour of volcanoes and can be combined with other geosciences disciplines to forecast their future activity.
    Description: In press
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: JCR Journal
    Description: reserved
    Keywords: high-resolution three-dimensional imaging ; X-ray computed microtomography ; volcanic eruptions ; volcanic rock textures ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2017-04-04
    Description: We present a duration-amplitude procedure for rapid determination of a moment magnitude, Mwpd, for large earthquakes using P-wave recordings at teleseismic distances. Mwpd can be obtained within 20 minutes or less after the event origin time as the required data is currently available in near-real time. The procedure determines apparent source durations, T0, from high-frequency, P-wave records, and estimates moments through integration of broadband displacement waveforms over the interval tP to tP+T0, where tP is the P arrival time. We apply the duration-amplitude methodology to 79 recent, large earthquakes (Global Centroid- Moment Tensor magnitude, MwCMT, 6.6 to 9.3) with diverse source types. The results show that a scaling of the moment estimates for interplate thrust and possibly tsunami earthquakes is necessary to best match MwCMT. With this scaling, Mwpd matches MwCMT typically within ±0.2 magnitude units, with a standard deviation of σ=0.11, equaling or outperforming other approaches to rapid magnitude determination. Furthermore, Mwpd does not exhibit saturation; that is, for the largest events, Mwpd does not systematically underestimate MwCMT. The obtained durations and duration-amplitude moments allow rapid estimation of an energy-to-moment parameter Θ* used for identification of tsunami earthquakes. Our results show that Θ* ≤ -5.7 is an appropriate cutoff for this identification, but also show that neither Θ* nor Mw is a good indicator for tsunamigenic events in general. For these events we find that a reliable indicator is simply that the duration T0 is greater than about 50 sec. The explicit use of the source duration for integration of displacement seismograms, the moment scaling, and other characteristics of the duration-amplitude methodology make it an extension of the widely used, Mwp, rapid-magnitude procedure. The need for a moment scaling for interplate thrust and possibly tsunami earthquakes may have important implications for the source physics of these events.
    Description: DPC-INGV (2007-2009) S3 Project
    Description: Published
    Description: 200-214
    Description: 3.1. Fisica dei terremoti
    Description: JCR Journal
    Description: open
    Keywords: earthquakes, Richter magnitude, seismic moment, seismograms, tsunami,  earthquake­source mechanism ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
    Publication Date: 2012-02-03
    Description: This handbook defines the discipline of historical seismology by comprehensively detailing the latest research methodologies for studying historical earthquakes and tsunamis. It describes the many historical sources that contain references to seismic phenomena, discusses the critical problems of interpreting such sources, and presents a summary of the various theories proposed (from ancient Greek to modern times) to explain the causes of earthquakes – indispensable factors for understanding historical earthquake descriptions. The text presents numerous examples of interpretations and misinterpretations of historical earthquakes and tsunamis in order to illustrate the key techniques, with a chapter devoted to an explanation of the date and time systems used throughout history in Mediterranean Europe and the Near East. The authors also tie historical seismology research to archaeological investigations and demonstrate how new scientific databases and catalogues can be compiled from information derived from the methodologies described. This is an important new reference for scientists, engineers, historians and archaeologists on the methodologies for analysing earthquakes and tsunamis of the past. Illustrated with examples from a broad geographic region (including Europe, North Africa, the Middle East, central Asia and the Americas), the book provides a valuable foundation for understanding the Earth’s seismic past and potential future seismic hazard.
    Description: Published
    Description: 3.10. Storia ed archeologia applicate alle Scienze della Terra
    Description: open
    Keywords: Historical earthquakes ; historical tsunamis ; historical seismology ; archaeoseismology ; earthquake catalogues ; databases ; 04. Solid Earth::04.06. Seismology::04.06.05. Historical seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
    Publication Date: 2017-04-04
    Description: Rapid extension and active normal faulting in the western extremity of the Corinth Gulf are accompanied by fast coastal uplift.We investigate Pleistocene uplift west of Aigion, by attempting to date remains of marine terraces and sedimentary sequences by calcareous nannoplankton and U-series analyses. Net uplift initiated recently, due to abandonment of an older rift-bounding fault zone and increase in activity on the presently active, coastal fault zone. This change apparently coincides with an abrupt slow down (or, termination) of secondary fault block tilting within the broader hangingwall block of the older zone, indicated by an angular unconformity that dates in the early part ofMIS10 ( 390–350 ka BP, preferably, in the earlier part of this period). Net uplift driven by the coastal zone resulted in the formation of MIS9c (330 ka) and younger terraces. The formation of the unconformity and the initiation of net uplift coincide temporally with a 300–400 ka unconformity recognized by recent studies in a wide area offshore Aigion i.e. they could be part of an evolutionary event that affected the entirewestern part of the Corinth Rift or, a large area therein. Uplift rate estimates at four locations are discussed with reference to the morphotectonic context of differential uplift of secondary fault blocks, and the context of possible increase in uplift ratewith time. Themost reliable and most useful estimate for uplift rate at the longitude of the studied transect is 1.74–1.85mm/year (time-averaged estimate for the last 240 ka, based on calcareous nannoplankton and sequence-stratigraphic interpretation)
    Description: ‘3HAZ Corinth’ E.U. research project 004043 (GOCE)-3HAZ-Corinth
    Description: Published
    Description: 78 - 104
    Description: 3.2. Tettonica attiva
    Description: JCR Journal
    Description: partially_open
    Keywords: coastal uplift ; marine terraces ; marine sequences ; deformation rate ; Pleistocene ; Corinth Gulf Reef ; 04. Solid Earth::04.04. Geology::04.04.01. Earthquake geology and paleoseismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
    Publication Date: 2017-04-04
    Description: An integrated bio-, magneto- and cyclostratigraphic study of the Ypresian/Lutetian (Early/Middle Eocene) transition along the Otsakar section resulted in the identification of the C22n/C21r chron boundary and of the calcareous nannofossil CP12a/b zonal boundary; the latter is the main correlation criterion of the Lutetian Global Stratotype Section and Point (GSSP) recently defined at Gorrondatxe (Basque Country). By counting precession-related mudstone–marl couplets of 21 ka, the time lapse between both events was calculated to be 819 ka. This suggests that the age of the CP12a/b boundary, and hence that of the Early/Middle Eocene boundary, is 47.76 Ma, 250 ka younger than previously thought. This age agrees with, and is supported by, estimates from Gorrondatxe based on the time lapse between the Lutetian GSSP and the C21r/C21n boundary. The duration of Chron C21r is estimated at 1.326 Ma. Given that the base of the Eocene is dated at 55.8 Ma, the duration of the Early Eocene is 8 Ma, 0.8 Ma longer than in current time scales. The Otsakar results further show that the bases of planktonic foraminiferal zones E8 and P10 are younger than the CP12a/b boundary. The first occurrence of Turborotalia frontosa, being approximately 550 ka older that the CP12a/b boundary, is the planktonic foraminiferal event that lies closest to the Early/Middle Eocene boundary. The larger foraminiferal SBZ12/13 boundary is located close to the CP12a/b boundary and correlates with Chron C21r, not with the C22n/C21r boundary.
    Description: In press
    Description: 1-19
    Description: 2.2. Laboratorio di paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Eocene ; Ypresian–Lutetian boundary ; biostratigraphy ; magnetostratigraphy ; cyclostratigraphy ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.04. Geology::04.04.10. Stratigraphy ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
    Publication Date: 2022-05-25
    Description: © The Authors, 2010. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 5 (2010): e10741, doi:10.1371/journal.pone.0010741.
    Description: Bisphenol A (BPA), used in the manufacture of plastics, is ubiquitously distributed in the aquatic environment. However, the effect of maternal transfer of these xenobiotics on embryonic development and growth is poorly understood in fish. We tested the hypothesis that BPA in eggs, mimicking maternal transfer, impact development, growth and stress performance in juveniles of rainbow trout (Oncorhynchus mykiss). Trout oocytes were exposed to 0, 30 and 100 µg.mL−1 BPA for 3 h in ovarian fluid, followed by fertilization. The embryos were maintained in clean water and sampled temporally over 156-days post-fertilization (dpf), and juveniles were sampled at 400-dpf. The egg BPA levels declined steadily after exposure and were undetectable after 21- dpf. Oocyte exposure to BPA led to a delay in hatching and yolk absorption and a consistently lower body mass over 152-dpf. The growth impairment, especially in the high BPA group, correlated with higher growth hormone (GH) content and lower GH receptors gene expression. Also, mRNA abundances of insulin-like growth factors (IGF-1 and IGF-2) and their receptors were suppressed in the BPA treated groups. The juvenile fish grown from the BPA-enriched eggs had lower body mass and showed perturbations in plasma cortisol and glucose response to an acute stressor. BPA accumulation in eggs, prior to fertilization, leads to hatching delays, growth suppression and altered stress response in juvenile trout. The somatotropic axis appears to be a key target for BPA impact during early embryogenesis, leading to long term growth and stress performance defects in fish.
    Description: This work was supported by funds from the Natural Science and Engineering Research Council (NSERC) of Canada Discovery grant and the Ontario Ministry of Agriculture and Food.
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-25
    Description: © 2010 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 5 (2010): e8537, doi:10.1371/journal.pone.0008537.
    Description: Despite the profound variation among marine consumers in tolerance for allelochemically-rich foods, few studies have examined the biochemical adaptations underlying diet choice. Here we examine the role of glutathione S-transferases (GSTs) in the detoxification of dietary allelochemicals in the digestive gland of the predatory gastropod Cyphoma gibbosum, a generalist consumer of gorgonian corals. Controlled laboratory feeding experiments were used to investigate the influence of gorgonian diet on Cyphoma GST activity and isoform expression. Gorgonian extracts and semi-purified fractions were also screened to identify inhibitors and possible substrates of Cyphoma GSTs. In addition, we investigated the inhibitory properties of prostaglandins (PGs) structurally similar to antipredatory PGs found in high concentrations in the Caribbean gorgonian Plexaura homomalla. Cyphoma GST subunit composition was invariant and activity was constitutively high regardless of gorgonian diet. Bioassay-guided fractionation of gorgonian extracts revealed that moderately hydrophobic fractions from all eight gorgonian species examined contained putative GST substrates/inhibitors. LC-MS and NMR spectral analysis of the most inhibitory fraction from P. homomalla subsequently identified prostaglandin A2 (PGA2) as the dominant component. A similar screening of commercially available prostaglandins in series A, E, and F revealed that those prostaglandins most abundant in gorgonian tissues (e.g., PGA2) were also the most potent inhibitors. In vivo estimates of PGA2 concentration in digestive gland tissues calculated from snail grazing rates revealed that Cyphoma GSTs would be saturated with respect to PGA2 and operating at or near physiological capacity. The high, constitutive activity of Cyphoma GSTs is likely necessitated by the ubiquitous presence of GST substrates and/or inhibitors in this consumer's gorgonian diet. This generalist's GSTs may operate as ‘all-purpose’ detoxification enzymes, capable of conjugating or sequestering a broad range of lipophilic gorgonian compounds, thereby allowing this predator to exploit a range of chemically-defended prey, resulting in a competitive dietary advantage for this species.
    Description: Financial support for this work was provided by the Ocean Life Institute Tropical Research Initiative Grant (WHOI) to KEW and MEH; the Robert H. Cole Endowed Ocean Ventures Fund (WHOI) to KEW; the National Undersea Research Center - Program Development Proposal (CMRC-03PRMN0103A) to KEW; Walter A. and Hope Noyes Smith, and a National Science Foundation Graduate Research Fellowship to KEW.
    Repository Name: Woods Hole Open Access Server
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  • 11
    Publication Date: 2022-05-25
    Description: © The Authors, 2010. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 5 (2010): e12805, doi:10.1371/journal.pone.0012805.
    Description: Circadian rhythms in behavior and physiology are the observable phenotypes from cycles in expression of, interactions between, and degradation of the underlying molecular components. In bilaterian animals, the core molecular components include Timeless-Timeout, photoreceptive cryptochromes, and several members of the basic-loop-helix-Per-ARNT-Sim (bHLH-PAS) family. While many of core circadian genes are conserved throughout the Bilateria, their specific roles vary among species. Here, we identify and experimentally study the rhythmic gene expression of conserved circadian clock members in a sea anemone in order to characterize this gene network in a member of the phylum Cnidaria and to infer critical components of the clockwork used in the last common ancestor of cnidarians and bilaterians. We identified homologs of circadian regulatory genes in the sea anemone Nematostella vectensis, including a gene most similar to Timeout, three cryptochromes, and several key bHLH-PAS transcription factors. We then maintained N. vectensis either in complete darkness or in a 12 hour light: 12 hour dark cycle in three different light treatments (blue only, full spectrum, blue-depleted). Gene expression varied in response to light cycle and light treatment, with a particularly strong pattern observed for NvClock. The cryptochromes more closely related to the light-sensitive clade of cryptochromes were upregulated in light treatments that included blue wavelengths. With co-immunoprecipitation, we determined that heterodimerization between CLOCK and CYCLE is conserved within N. vectensis. Additionally, we identified E-box motifs, DNA sequences recognized by the CLOCK:CYCLE heterodimer, upstream of genes showing rhythmic expression. This study reveals conserved molecular and functional components of the circadian clock that were in place at the divergence of the Cnidaria and Bilateria, suggesting the animal circadian clockwork is more ancient than previous data suggest. Characterizing circadian regulation in a cnidarian provides insight into the early origins of animal circadian rhythms and molecular regulation of environmentally cued behaviors.
    Description: The project described was supported by Award Number F32HD062178 to AMR from the Eunice Kennedy Shriver National Institute of Child Health and Human Development and the Tropical Research Initiative of the Woods Hole Oceanographic Institution.
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  • 12
    Publication Date: 2022-05-25
    Description: This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The definitive version was published in PLoS ONE 5 (2010): e9597, doi:10.1371/journal.pone.0009597.
    Description: The objective of this study was to enhance removal of fishing gear from right whales (Eubalaena glacialis) at sea that evade disentanglement boat approaches. Titrated intra muscular injections to achieve sedation were undertaken on two free swimming right whales. Following initial trials with beached whales, a sedation protocol was developed for right whales. Mass was estimated from sighting and necropsy data from comparable right whales. Midazolam (0.01 to 0.025 mg/kg) was first given alone or with meperidine (0.17 to 0.25 mg/kg) either once or four times over two hours to whale #1102 by cantilevered pole syringe. In the last attempt on whale #1102 there appeared to be a mild effect in 20–30 minutes, with duration of less than 2 hours that included exhalation before the blowhole fully cleared the water. Boat avoidance, used as a measure of sedation depth, was not reduced. A second severely entangled animal in 2009, whale #3311, received midazolam (0.03 mg/kg) followed by butorphanol (0.03 mg/kg) an hour later, delivered ballistically. Two months later it was then given midazolam (0.07 mg/kg) and butorphanol (0.07 mg/kg) simultaneously. The next day both drugs at 0.1 mg/kg were given as a mixture in two darts 10 minutes apart. The first attempt on whale #3311 showed increased swimming speed and boat avoidance was observed after a further 20 minutes. The second attempt on whale #3311 showed respiration increasing mildly in frequency and decreasing in strength. The third attempt on whale #3311 gave a statistically significant increase in respiratory frequency an hour after injection, with increased swimming speed and marked reduction of boat evasion that enabled decisive cuts to entangling gear. We conclude that butorphanol and midazolam delivered ballistically in appropriate dosages and combinations may have merit in future refractory free swimming entangled right whale cases until other entanglement solutions are developed.
    Description: This work was funded by Cecil H. and Ida M. Green Technology Innovation Program (WHOI), North Pond Foundation, Sloan and Wick Simmonds, Northeast Consortium, National Oceanic Atmospheric Administration (NOAA), Georgia Department of Natural Resources, Florida Fish and Wildlife Conservation Commission, Provincetown Center for Coastal Studies, Coastwise Consulting, the Atlantic Large Whale Disentanglement Network, and Aquatic Animal Health Program, University of Florida.
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  • 13
    Publication Date: 2022-05-26
    Description: © The Authors, 2010. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 5 (2010): e9688, doi:10.1371/journal.pone.0009688.
    Description: Dinoflagellates are unicellular, often photosynthetic protists that play a major role in the dynamics of the Earth's oceans and climate. Sequencing of dinoflagellate nuclear DNA is thwarted by their massive genome sizes that are often several times that in humans. However, modern transcriptomic methods offer promising approaches to tackle this challenging system. Here, we used massively parallel signature sequencing (MPSS) to understand global transcriptional regulation patterns in Alexandrium tamarense cultures that were grown under four different conditions. We generated more than 40,000 unique short expression signatures gathered from the four conditions. Of these, about 11,000 signatures did not display detectable differential expression patterns. At a p-value 〈 1E-10, 1,124 signatures were differentially expressed in the three treatments, xenic, nitrogen-limited, and phosphorus-limited, compared to the nutrient-replete control, with the presence of bacteria explaining the largest set of these differentially expressed signatures. Among microbial eukaryotes, dinoflagellates contain the largest number of genes in their nuclear genomes. These genes occur in complex families, many of which have evolved via recent gene duplication events. Our expression data suggest that about 73% of the Alexandrium transcriptome shows no significant change in gene expression under the experimental conditions used here and may comprise a “core” component for this species. We report a fundamental shift in expression patterns in response to the presence of bacteria, highlighting the impact of biotic interaction on gene expression in dinoflagellates.
    Description: This work was primarily funded by a collaborative grant from the National Institutes of Health (R01 ES 013679-01A2) awarded to DB, DMA, and M. Bento Soares. Funding support for DMA and DLE was also provided from the Woods Hole Center for Oceans and Human Health from the NSF/NIEHS Centers for Oceans and Human Health program, NIEHS (P50 ES 012742) and (NSF OCE-043072). Additional support came from the National Science Foundation (EF-0732440) in a grant awarded to F. Gerald Plumley, DB, JDH, and DMA. AM was supported by an Institutional NRSA (T 32 GM98629).
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  • 14
    Publication Date: 2022-05-26
    Description: Author Posting. © Foundation for Environmental Conservation, 2009. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Environmental Conservation 36 (2009): 268-276, doi:10.1017/S0376892910000032.
    Description: No-take marine reserves are widely recognized as an effective conservation tool for protecting marine resources. Despite considerable empirical evidence that abundance and biomass of fished species increase within marine reserve boundaries, the potential for reserves to provide fisheries and conservation benefits to adjacent waters remains heavily debated. This paper uses statistical and population models to evaluate published empirical data on adult spillover from marine reserves and shows that spillover is a common phenomenon for species that respond positively to reserve protection, but at relatively small scales, detectable on average up to 800 m from reserve boundaries. At these small scales, local fisheries around reserves were likely unsustainable in 12 of 14 cases without the reserve, and spillover partially or fully offsets losses in catch due to reserve closure in the other two cases. For reserves to play a role in sustaining and replenishing larger-scale fished stocks, networks of reserves may be necessary, but as few exist this is difficult to evaluate. The results suggest reserves can simultaneously meet conservation objectives and benefit local fisheries adjacent to their boundaries.
    Description: Support was provided by a grant from the David and Lucille Packard Foundation to NCEAS for ecosystem-based management ofmarine systems, the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) funded by the David and Lucile Packard Foundation and the Gordon and Betty Moore Foundation (contribution number 348), the Sustainable Fisheries Group supported by the Paul G. Allen Family Foundation and the Bahamas Biocomplexity Project (US NSF Biocomplexity grantOCE-0119976) andUS EPA Science to Achieve Results (R832223).
    Keywords: Adult fish movement ; Fisheries ; Global ; Marine protected areas ; No-take reserves ; Spillover effect ; Synthesis
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  • 15
    Publication Date: 2022-05-26
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 4 (2009): e6372, doi:10.1371/journal.pone.0006372.
    Description: Massively parallel pyrosequencing of amplicons from the V6 hypervariable regions of small-subunit (SSU) ribosomal RNA (rRNA) genes is commonly used to assess diversity and richness in bacterial and archaeal populations. Recent advances in pyrosequencing technology provide read lengths of up to 240 nucleotides. Amplicon pyrosequencing can now be applied to longer variable regions of the SSU rRNA gene including the V9 region in eukaryotes. We present a protocol for the amplicon pyrosequencing of V9 regions for eukaryotic environmental samples for biodiversity inventories and species richness estimation. The International Census of Marine Microbes (ICoMM) and the Microbial Inventory Research Across Diverse Aquatic Long Term Ecological Research Sites (MIRADA-LTERs) projects are already employing this protocol for tag sequencing of eukaryotic samples in a wide diversity of both marine and freshwater environments. Massively parallel pyrosequencing of eukaryotic V9 hypervariable regions of SSU rRNA genes provides a means of estimating species richness from deeply-sampled populations and for discovering novel species from the environment.
    Description: This work was supported by grants from the W.M. Keck Foundation and the Woods Hole Center for Oceans and Human Health from the National Institutes of Health and National Science Foundation (NIH/NIEHS 1 P50 ES012742-01 and NSF/OCE 0430724-J) (LAZ and SH).
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