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  • 1
    Monograph available for loan
    Monograph available for loan
    Bacteriophages : methods and protocols (2024)
    New York, NY : Humana Press
    Details Availability
    Call number: AWI Bio-24-95664
    Description / Table of Contents: This volume provides detailed protocols for the isolation, enumeration, characterization of diverse bacteriophages, including both small to jumbo bacteriophages, from soil, fecal, municipal wastewater, and from food niche samples. Chapters highlight the diversity of bacteriophages in different environments, quantifications using culture, molecular techniques, protocols for isolate, interaction of bacteriophage proteins with host cells, and how to use bacteriophages to transfer foreign genetic elements to bacterial strains. In addition to the above, chapters feature the application of bacteriophages/bacteriophage-derived products. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips (in the Notes section) on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Bacteriophages: Methods and Protocols aims to ensure successful results in further study of this vital field.
    Type of Medium: Monograph available for loan
    Pages: XVI, 431 Seiten , Illustrationen
    ISBN: 978-1-0716-3548-3 , 9781071635483
    ISSN: 1064-3745 , 1940-6029
    Series Statement: Methods in Molecular Biology 2738
    DOI: 10.1007/978-1-0716-3549-0
    Language: English
    Note: Contents Preface Contributors PART I AN OVERVIEW OF THE DIVERSITY OF BACTERIOPHAGES 1 Structural and Genomic Diversity of Bacteriophages / Bert Ely, Jacob Lenski, and Tannaz Mohammadi 2 The Diversity of Bacteriophages in the Human Gut / Amanda Carroll-Portillo, Derek M. Lin, and Henry C. Lin 3 Breaking the Ice: A Review of Phages in Polar Ecosystems / Mara Elena Heinrichs, Gonçalo J. Piedade, Ovidiu Popa, Pacifica Sommers, Gareth Trubl, Julia Weissenbach, and Janina Rahlff 4 The Diversity of Bacteriophages in Hot Springs / Timothy J. Marks and Isabella R. Rowland PART II ISOLATION OF BACTERIOPHAGES 5 Isolation of Bacteriophages from Soil Samples in a Poorly Equipped Field Laboratory in Kruger National Park / Ayesha Hassim and Kgaugelo Edward Lekota 6 Purification and Up-Concentration of Bacteriophages and Viruses from Fecal Samples / Frej Larsen, Rasmus Riemer Jakobsen, Xiaotian Mao, Josue Castro-Mejia, Ling Deng, and Dennis S. Nielsen 7 Isolation of Enterococcus Bacteriophages from Municipal Wastewater Samples Using an Enrichment Step / Cory Schwarz and Jacques Mathieu 8 Phage DNA Extraction, Genome Assembly, and Genome Closure / Justin Boeckman, Mei Liu, Jolene Ramsey, and Jason Gill PART III ENUMERATION OF BACTERIOPHAGES 9 Enumeration of Bacteriophages by Plaque Assay / Diana Elizabeth Waturangi 10 Detection and Quantification of Bacteriophages in Wastewater Samples by Culture and Molecular Methods/ Laura Sala-Comorera, Maite Muniesa, and Lorena Rodríguez-Rubio 11 Flow Virometry: A Fluorescence-Based Approach to Enumerate Bacteriophages in Liquid Samples / Elena A. Dlusskaya and Rafik Dey 12 A Metagenomics Approach to Enumerate Bacteriophages in a Food Niche / Kelsey White, Giovanni Eraclio, Gabriele Andrea Lugli, Marco Ventura, Jennifer Mahony, Fabio Dal Bello, and Douwe van Sinderen PART IV CHARACTERIZATION OF BACTERIOPHAGES 13 Bioinformatic Analysis of Staphylococcus Phages: A Key Step for Safe Cocktail Development / Soledad Telma Carrasco and He´ctor Ricardo Morbidoni 14 Use of Localized Reconstruction to Visualize the Shigella Phage Sf6 Tail Apparatus / Chun-Feng David Hou, Fenglin Li, Stephano Iglesias, and Gino Cingolani 15 Bacteriophage–Host Interactions and Coevolution / Diana M. Álvarez-Espejo, Dácil Rivera, and Andrea I. Moreno-Switt 16 Unraveling Physical Interactions of Clostridioides difficile with Phage and Phage-Derived Proteins Using In Vitro and Whole-Cell Assays / Wichuda Phothichaisri, Tanaporn Phetruen, Surang Chankhamhaengdecha, Tavan Janvilisri, Puey Ounjai, Robert P. Fagan, and Sittinan Chanarat 17 Phage Transduction of Staphylococcus aureus / Melissa-Jane Chu Yuan Kee and John Chen PART V APPLICATION OF BACTERIOPHAGES AND BACTERIOPHAGE-DERIVED COMPONENTS 18 The Next Generation of Drug Delivery: Harnessing the Power of Bacteriophages / Alaa A. A. Aljabali, Mohammad B. M. Aljbaly, Mohammad A. Obeid, Seyed Hossein Shahcheraghi, and Murtaza M. Tambuwala 19 Construction of Nonnatural Cysteine-Cross-Linked Phage Libraries / Brittney Chau, Kristi Liivak, and Jianmin Gao 20 Application of Deep Sequencing in Phage Display / Vincent Van Deuren, Sander Plessers, Rob Lavigne, and Johan Robben 21 The Application of Bacteriophage and Photoacoustic Flow Cytometry in Bacterial Identification / Robert H. Edgar, Anie-Pier Samson, and John A. Viator 22 Propagation, Purification, and Characterization of Bacteriophages for Phage Therapy / Katarzyna Kosznik-Kwaśnicka, Gracja Topka, Jagoda Mantej, Łukasz Grabowski, Agnieszka Necel, Grzegorz Węgrzyn, and Alicja Węgrzyn 23 Overcoming Bacteriophage Resistance in Phage Therapy / Elina Laanto 24 Bacteriophage Virus-Like Particles: Platforms for Vaccine Design / Ebenezer Tumban Index
    Location: AWI Reading room
    Branch Library: AWI Library
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  • 2
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    Copper-cobalt Flora of Upper Katanga and Copperbelt : Field guide; Over 400 plants, 1,000 photographs and 500 drawings (2016)
    Liège : Presses Agronomiques de Gembloux
    Details
    Description / Table of Contents: The copper-cobalt outcrops of Upper Katanga and north-western Zambia host a particular flora which comprises an estimated 750 species of which more than 400 are treated in this copper-cobalt field guide. The aim of this book, resulting from several years of intensive field work and study, is to bring together the basic knowledges permitting an easy approach to the identification of a great number of the species to be encountered. More than 400 species are illustrated with color photographs and/or drawings together with comments concerning synonyms, habit, description, ecology and distribution. Plant species are listed and colour-coded according to classification: Cyanoprocaryota, lichenized Fungi, Anthocerophyta, Marchantiophyta and Bryophyta (red edge), Lycophyta and Monilophyta (green edge), Magnoliopsida (blue edge) and Liliopsida (yellow edge). An index allows easy location either according to genus and species. An account of the research on copper-cobalt ecosystems carried out during the last ten years in southeastern D.R. Congo is also presented. The editors have spent more than twenty years in the area concerned and have collected more than 8,500 voucher specimens, including eleven species new to science (holotypes).
    Pages: Online-Ressource (422 Seiten)
    ISBN: 9782870160800
    URL: http://hdl.handle.net/2268/194087
    Language: English
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  • 3
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    The Gene Ontology Handbook (2017)
    New York, NY : Humana Press
    Details
    Keywords: Life sciences ; Bioinformatics ; Life Sciences ; Bioinformatics
    Description / Table of Contents: Primer on Ontologies --- The Gene Ontology and the Meaning of Biological Function --- Primer on the Gene Ontology --- Best Practices in Manual Annotation with the Gene Ontology --- Computational Methods for Annotation Transfers from Sequence --- Text Mining to Support Gene Ontology Curation and Vice Versa --- How Does the Scientific Community Contribute to Gene Ontology? --- Evaluating Computational Gene Ontology Annotations --- Evaluating Functional Annotations of Enzymes Using the Gene Ontology --- Community-Based Evaluation of Computational Function Prediction --- Get GO!: Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools --- Semantic Similarity in the Gene Ontology --- Gene-Category Analysis --- Gene Ontology: Pitfalls, Biases, and Remedies --- Visualizing GO Annotations --- A Gene Ontology Tutorial in Python --- Annotation Extensions --- The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations --- Complementary Sources of Protein Functional Information: The Far Side of GO --- Integrating Bio-Ontologies and Controlled Clinical Terminologies: From Base Pairs to Bedside Phenotypes --- The Vision and Challenges of the Gene Ontology
    Pages: Online-Ressource (XII, 305 pages) , 56 illustrations, 50 illustrations in color
    ISBN: 9781493937431
    URL: https://link.springer.com/openurl?genre=book&isbn=978-1-4939-3743-1
    Language: English
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