ALBERT

Note: Contents: 1 General introduction. - 1.1 Challenges of isotope-based temperature reconstructions. - 1.2 Thesis overview. - 1.3 Author contributions. - 2 Theoretical background. - 2.1 The isotopic composition of firn and ice. - 2.1.1 Fractionation of water isotopologues. - 2.1.2 Relationship with temperature. - 2.1.3 Measuring of the isotopic composition. - 2.2 Processes within the firn column. - 2.2.1 The firn column of polar ice sheets. - 2.2.2 The density of firn. - 2.2.3 The temperature profile of firn. - 2.2.4 Vapour diffusion in firn. - 2.3 Internal climate variability. - 3 Regional climate signal vs.local noise: a two-dimensional view of water isotopes. - 3.1 Introduction. - 3.2 Data and methods. - 3.3 Results. - 3.3.1 Trench isotope records. - 3.3.2 Single-profile representativity. - 3.3.3 Mean trench profiles. - 3.3.4 Spatial correlation structure. - 3.3.5 Statistical noise model. - 3.4 Discussion. - 3.4.1 Local noise vs. regional climate signal. - 3.4.2 Representativity of isotope signals. - 3.4.3 Implications. - 3.5 Conclusions. - 3.6 Appendix A: Derivation of noise model. - 3.6.1 Definitions. - 3.6.2 Derivation of model correlations. - 3.6.3 Estimation of parameters. - 3.7 Appendix B: Noise level after diffusion. - 4 Constraints on post-depositional isotope modifications in east antarctic firn. - 4.1 Introduction. - 4.2 Data and methods. - 4.2.1 Sampling and measurements. - 4.2.2 Trench depth scale. - 4.2.3 Spatial variability of trench profiles. - 4.2.4 Quantification of downward advection, densification and diffusion. - 4.2.5 Statistical tests. - 4.3 Results. - 4.3.1 Comparison of T15 and T13 isotope data. - 4.3.2 Expected isotope profile changes. - 4.3.3 Temporal vs. spatial variability. - 4.4 Discussion. - 4.4.1 Densification, diffusion and stratigraphic noise. - 4.4.2 Additional post-depositional modifications. - 4.5 Conclusions. - 5 On the similarity and apparent cycles of isotope variations. - 5.1 Introduction. - 5.2 Data and Methods. - 5.2.1 Data. - 5.2.2 Spectral analysis. - 5.2.3 Rice’s formula. - 5.2.4 Cycle length and amplitude estimation. - 5.2.5 Model for vertical isotope profiles. - 5.3 Results. - 5.3.1 Spectral analysis of isotope profiles. - 5.3.2 Theoretical and observed cycle length. - 5.3.3 Illustrative examples. - 5.3.4 Depth dependency of cycle length. - 5.3.5 Simulated vs. observed isotope variations. - 5.4 Discussion and summary. - 5.5 Conclusions. - 5.6 Appendix A: Input sensitivity. - 5.7 Appendix B: Additional results. - 5.8 Appendix C: Spectral significance testing. - 6 Timescale-dependency of antarctic isotope variations. - 6.1 Introduction. - 6.2 Data and methods. - 6.2.1 DML and WAIS isotope records. - 6.2.2 Spectral model. - 6.2.3 Timescale-dependent signal-to-noise ratio. - 6.2.4 Effects of diffusion and time uncertainty. - 6.2.5 Present-day temperature decorrelation. - 6.3 Results. - 6.3.1 Illustration of model approach. - 6.3.2 DML and WAIS isotope variability. - 6.4 Discussion. - 6.4.1 Interpretation of noise spectra. - 6.4.2 Interpretation of signal spectra. - 6.4.3 Signal-to-noise ratios. - 6.4.4 Differences between DML and WAIS. - 6.5 Conclusions. - 7 Declining temperature variability from LGM to holocene. - 8 General discussion and conclusions. - 8.1 Short-scale spatial and temporal isotope variability. - 8.1.1 Local spatial variability. - 8.1.2 Seasonal to interannual variability. - 8.1.3 Spatial vs. temporal variability. - 8.2 Extension to longer scales. - 8.2.1 Spatial vs. temporal variability on interannual timescales. - 8.2.2 Holocene and longer timescales. - 8.3 Concluding remarks and outlook. - Bibliography. - A Methods to: declining temperature variability from lgm to holocene. - A.1 Temperature proxy data. - A.2 Model-based temperature and variability change. - A.3 Temperature recalibration of proxy records. - A.3.1 Recalibration of ice-core records. - A.3.2 Recalibration of marine records. - A.4 Variance and variance ratio estimation. - A.5 Noise correction. - A.5.1 Testing effect of noise correction. - A.6 Effect of ecological adaption and bioturbation. - A.7 Effect of proxy sampling locations. - B Layering of surface snow and firn: noise or seasonal signal?. - B.1 Introduction. - B.2 Materials and methods. - B.2.1 Firn-core density profiles. - B.2.2 Trench density profiles. - B.2.3 Dielectric profiling and density estimates. - B.2.4 Comparison of DEP and CT density. - B.2.5 Ion measurements. - B.3 Results. - B.3.1 2-D trench density data. - B.3.2 Spatial correlation structure. - B.3.3 Comparison of mean density, isotope and impurity profiles. - B.3.4 Spectral analysis of vertical density data. - B.4 Discussion. - B.4.1 Spatial variability. - B.4.2 Representativeness of single profiles. - B.4.3 Seasonal cycle in snow density. - B.4.4 Density layering in firn and impurities. - B.5 Conclusions. - Acknowledgements - Danksagung.

Note: TABLE OF CONTENTS SUMMARY 1. BACKGROUND AND OVERARCHING GOALS OF MOSAiC 2. MEASUREMENTS AND REQUIREMENTS 2.1 Atmosphere (team ATMOS) 2.2 Sea Ice and Snow Cover (team ICE) 2.3 Ocean (team OCEAN) 2.4 Bio-geochemical System (team BGC) 2.5 Ecosystem (team ECO) 2.6 Cross-team coordination 3. OBSERVATIONAL SCALES AND SCIENTIFIC-TECHNICAL IMPLEMENTATION 3.1 Installations, Labs, and Containers on Polarstern 3.2 Major Installations on/in/under the Central lee Camp 3.3 Deployment and Operation ofthe Distributed Network 3.4 Airborne Observations 3.5 Hovercraft Observations 3.6. Other Main Platforms 3.7 Intensive Observation Periods 3.8 Events 4. PRACTICAL/ LOGISTICAL ASPECTS 4.1 Detailed Time Line (2016-2022) 4.2 Drift Trajectory and Re-supply 4.3 Personnel and Personnel Exchange 4.4 Routine Operations during the Drift 4.5 Governance Structure 4.6 Rescue and Alternative Plans 4.7 Safety Aspects during the Drift 4.8 Impacts of Polarstern on Measurements and Environment 4.9 Outreach and Media Concept 4.10 Preparation and summary workshops, conferences 5. IMPLEMENTATION OF REMOTE SENSING 5.1 Pre-drift Coordination of the Remote Sensing Program 5.2 Acquisition of Satellite Data during the Drift 5.3 Coordination with In-situ Measurements 6. IMPLEMENTATION OF NUMERICAL MODELS 6.1 Operational Forecast and Reanalysis Products of the MOSAiC Drift 6.2 Data Assimilation Studies 6.3 Process and Regional Modeling of the Sub-systems 6.4 Coupled Climate Modeling 7. DATA POLICY AND MANAGEMENT PLAN 7.1 Outcome ofthe St. Petersburg Implementation Workshop 7.2 The MOSAiC Data Group: Development ofthe Data Management Plan 7.3 The Technical Concept for Supporting the Data Life Cycle in MOSAiC 7.4 The Role of PANGAEA as MOSAiC Data Repository 7.5 Project Data Management and Publication 8. LINKS TO EXTERNAL PROGRAMS AND PROJECTS 8.1 Cooperation with External Projects and Programs 8.2 Cooperation with Parallel Experiments 9. APPENDIX 9.1 Preliminary Tables of Parameters for Sections 2.1 to 2.5 9.2 Preliminary Table of Partners 9.3 List of Abbreviations

Note: Contents Preface Acknowledgements 1 Introduction 1.1 The Periglacial Concept: Definitions and Scope 1.2 The Periglacial Realm 1.3 The Development of Periglacial Geomorphology 1.4 Periglacial Geomorphology: The Quaternary Context 1.5 The Aims and Organization of this Book 2 Periglacial Environments 2.1 Introduction 2.2 Periglacial Climates 2.3 Soils in Periglacial Environments 2.4 Vegetation Cover in Periglacial Environments 2.5 Synthesis 3 Ground Freezing and Thawing 3.1 Introduction 3.2 Ground Heating and Cooling 3.3 Soil Freezing 3.4 Ice Segregation in Freezing Soils 3.5 Thaw Consolidation 3.6 Synthesis 4 Permafrost 4.1 Introduction 4.2 Permafrost Thermal Regime 4.3 Classification of Permafrost 4.4 Detection, Mapping and Modelling of Permafrost 4.5 Permafrost Distribution 4.6 Permafrost-glacier Interactions 4.7 The Geomorphic Importance of Permafrost 5 Ground Ice and Cryostratigraphy 5.1 Introduction 5.2 Genetic Classification of Ground Ice 5.3 Description of Ground Ice 5.4 Ice Contacts 5.5 Cryostratigraphy 5.6 The Transition Zone 5.7 Massive Ground Ice 5.8 Yedoma 6 Thermal Contraction Cracking: Ice Wedges and Related Landforms 6.1 Introduction 6.2 Thermal Contraction Cracking and Polygon Evolution 6.3 Ice Veins and Ice Wedges 6.4 Ice-wedge Polygons 6.5 Sand Veins and Sand Wedges 6.6 Composite Veins and Composite Wedges 6.7 Sand-wedge Polygons 6.8 Frost Cracking of Seasonally Frozen Ground 6.9 Thaw Modification of Frost Wedges 6.10 Frost-Wedge Pseudomorphs and Frost Polygons in Areas of Past Permafrost 7 Pingos, Palsas and other Frost Mounds 7.1 Introduction 7.2 Characteristics of Pingos 7.3 Hydrostatic Pingos 7.4 Hydraulic Pingos 7.5 Pingo Problems and Problem Pingos 7.6 Segregation Ice Mounds: Palsas, Lithalsas and Related Landforms 7.7 Palsas 7.8 Peat Plateaus 7.9 Lithalsas 7.10 Permafrost Plateaus 7.11 Other Permafrost Mounds 7.12 Ephemeral Frost Mounds 7.13 Relict Permafrost Mounds 8 Thermokarst 8.1 Introduction 8.2 Thermokarst Lakes and Drained Lake Basins 8.3 Thermokarst Pits, Bogs and Fens 8.4 Retrogressive Thaw Slumps 8.5 Small-scale Thermokarst Features: Beaded Streams, Sinkholes and Thermokarst Gullies 8.6 Sediment Structures associated with Thermokarst 8.7 Relict Thermokarst Phenomena 9 Seasonally Frozen Ground Phenomena 9.1 Introduction 9.2 Upfreezing of Clasts 9.3 Frost Heave of Bedrock 9.4 Patterned Ground: The Embroidery on the Landscape 9.5 Patterned Ground Processes 9.6 Sorted Patterned Ground 9.7 Nonsorted Patterned Ground 9.8 Cryoturbations 9.9 Pedogenic Effects of Freezing and Thawing 9.10 Fragipans 9.11 Synthesis 10 Rock Weathering and Associated Landforms 10.1 Introduction 10.2 Physical Weathering Processes 10.3 Chemical Weathering Processes 10.4 Biotic Weathering Processes 10.5 Weathering Processes in Periglacial Environments 10.6Cold-climate Karst 10.7 Tors 10.8 Blockfields and Related Periglacial Regolith Covers 10.9 Brecciated Bedrocks 11 Periglacial Mass Movement and Hillslope Evolution 11.1 Introduction 11.2 Solifluction Processes 11.3 Solifluction Landforms 11.4 Pleistocene Solifluction Landforms and Slope Deposits 11.5 Active-layer Failures 11.6 Permafrost Creep 11.7 Nivation 11.8 Cryoplanation 11.9 Slope Form and Slope Evolution 12 Talus Slopes and Related Landforms 12.1 Introduction 12.2 Rockfall Talus 12.3 The Geomorphic Role of Snow Avalanches 12.4 Debris-flow Activity 12.5 Rock Glaciers 12.6 Pronival (Protalus) Ramparts 12.7 Synthesis 13 Fluvial Processes and Landforms 13.1 Introduction 13.2 Periglacial Hydrology 13.3 Slopewash 13.4 Slushflows 13.5 Sediment Transport in Periglacial Rivers 13.6 Bank and Channel Erosion 13.7 River Channels 13.8 Alluvial Landforms in Periglacial Environments 13.9 Valley Form 13.10 Pleistocene Periglacial Rivers 13.11 Synthesis 14 Wind Action 14.1 Introduction 14.2 Aeolian Processes 14.3 Wind Erosion in Present Periglacial Environments 14.4 Aeolian Deposits in Present Periglacial Environments 14.5 Quaternary Aeolian Deposits 14.6 Synthesis 15 Periglacial Coasts 15.1 Introduction 15.2 The Nature of Periglacial Coasts 15.3 The Role of Ice in Shoreline Evolution 15.4 Ice-rich Permafrost Coasts 15.5 Thermokarst Coasts 15.6 Barrier Coasts 15.7 Salt Marshes and Tidal Flats 15.8 Rock Coasts 15.9 Raised and Inherited Shorelines 15.10 Lake Shorelines 15.11 Synthesis 16 Past Periglacial Environments 16.1 Introduction 16.2 Palaeoenvironmental Reconstruction Based on Periglacial Features 16.3 Past Periglacial Environments of the British Isles 16.4 Pre-Late Devensian Periglacial Features in the British Isles 16.5 The Dimlington Stade in the British Isles 16.6 The Younger Dryas (Loch Lomond) Stade in the British Isles 16.7 Past Periglacial Environments of the British Isles: Commentary 16.8 Late Weichselian Periglacial Environments in Continental Europe 16.9 Late Wisconsinan Periglacial Environments in North America 16.10 Permafrost Extent in the Northern Hemisphere During the Last Glacial Stage 16.11 Concluding Comments 17 Climate Change and Periglacial Environments 17.1 Introduction 17.2 Permafrost Degradation 17.3 Geomorphological Implications of Climate Change in the Circumpolar North 17.4Geomorphological Implications of Climate Change in High Mountain Environments 17.5 Climate Change ,Permafrost Degradation and Greenhouse Gas Emissions 17.6 Conclusion Appendix: Text Abbreviations, Units and Symbols Employed in Equations References Index

Note: Table of contents Preface About the authors Acknowledgements Dedication List of figures List of tables List of symbols Part I Introduction and characteristics of permafrost I Definition and description 1.1 Introduction 1.2 Additional terms originating in Russia 1.3 History of permafrost research 1.4 Measurement of ground temperature 1.5 Conduction, convection and advection 1.6 Therm al regimes in regions based on heat conduction 1.7 Continentality index 1.8 Moisture movement in the active layer during freezing and thawing 1.9 Moisture conditions in permafrost ground 1.10 Results of freezing moisture 1.11 Strength of ice 1.12 Cryosols, gelisols, and leptosols 1.13 Fragipans 1.14 Salinity in permafrost regions 1.15 Organic matter 1.16 Micro-organisms in permafrost 1.16.1 Antarctic permafrost 1.16.2 High-latitude permafrost 1.16.3 High altitude permafrost in China 1.16.4 Phenotypic traits 1.16.5 Relation to climate change on the Tibetan plateau 1.17 Gas and gas hydrates 1.18 Thermokarst areas 1.19 Offshore permafrost 2 Cryogenic processes where temperatures dip below 0°C 2.1 Introduction 2.2 The nature of ice and water 2.3 Effects of oil pollution on freezing 2.4 Freezing and thawing of the active layer in permafrost in equilibrium with a stable climate 2.5 Relation of clay mineralogy to the average position of the permafrost table 2.6 Ground temperature envelopes in profiles affected by changes in mean annual ground surface temperature (MASGT) 2.7 Needle ice 2.8 Frost heaving 2.9 Densification and thaw settlement 2.10 Cryostratigraphy, cryostructures, cryotextures and cryofacies 2.11 Ground cracking 2.12 Dilation cracking 2.13 Frost susceptibility 2.14 Cryoturbation, gravity processes and injection structures 2.14.1 Cryoturbation 2.14.2 Upward injection of sediments from below 2.14.3 Load-casting 2.15 Upheaving of objects 2.16 Upturning of objects 2.17 Sorting 2.18 Weathering and frost comminution 2.19 Karst in areas with permafrost 2.20 Seawater density and salinity 3 Factors affecting permafrost distribution 3.1 Introduction 3.2 Climatic factors 3.2.1 Heat balance on the surface of the Earth and its effect on the climate 3.2.2 Relationship between air and ground temperatures 3.2.3 Thermal offset 3.2.4 Relation to air masses 3.2.5 Precipitation 3.2.6 Latitude and longitude 3.2.7 Topography and altitude 3.2.8 Cold air drainage 3.2.9 Buffering of temperatures against change in mountain ranges 3.3 Terrain factors 3.3.1 Vegetation 3.3.2 Hydrology 3.3.3 Lakes and water bodies 3.3.4 Nature of the soil and rock 3.3.5 Fire 3.3.6 Glaciers 3.3.7 The effects of Man 4 Permafrost distribution 4.1 Introduction 4.2 Zonation of permafrost 4.3 Permafrost mapping 4.4 Examples of mapping units used 4.5 Modeling permafrost distribution 4.6 Advances in geophysical methods 4.7 Causes of variability reducing the reliability of small-scale maps 4.8 Maps of permafrost-related properties based on field observations 4.8.1 Permafrost thickness 4.8.2 Maps of ice content 4.8.3 Water resources locked up in perennially frozen ground 4.8.4 Total carbon content 4.9 Use of remote sensing and airborne platforms in monitoring environmental conditions and disturbances 4.10 Sensitivity to climate change: Hazard zonation 4.11 Classification of permafrost stability based on mean annual ground temperature Part II Permafrost landforms II. 1 Introduction 5 Frost cracking, ice-wedges, sand, loess and rock tessellons 5.1 Introduction 5.2 Primary and secondary wedges 5.2.1 Primary wedges 5.2.1.1 Ice-wedges 5.2.1.2 Sand tessellons 5.2.1.3 Loess tessellons 5.2.1.4 Rock tessellons 5.2.2 Secondary wedges 5.2.2.1 Ice-wedge casts 5.2.2.2 Soil wedges 6 Massive ground ice in lowlands 6.1 Introduction 6.2 Distribution of massive icy beds in surface sediments 6.3 Sources of the sediments 6.4 Deglaciation of the Laurentide ice sheet 6.5 Methods used to determine the origin of the massive icy beds 6.6 Massive icy beds interpreted as being formed by cryosuction 6.7 Massive icy beds that may represent stagnant glacial ice 6.8 Other origins of massive icy beds 6.9 Ice complexes including yedoma deposits 6.10 Conditions for growth of thick ice-wedges 6.11 The mechanical condition of the growth of ice-wedges and its connection to the properties of the surrounding sediments 6.12 Buoyancy of ice-wedges 6.13 Summary of the ideas explaining yedoma evolution 6.14 Aufeis 6.15 Perennial ice caves 6.16 Types of ice found in perennial ice caves 6.17 Processes involved in the formation of perennial ice caves 6.18 Cycles of perennial cave evolution 6.18.1 Perennial ice caves in deep hollows 6.18.2 Sloping caves with two entrances 6.18.3 Perennial ice caves with only one main entrance but air entering through cracks and joints in the bedrock walls 6.18.4 Perennial ice caves with only one main entrance and no other sources of cooling 6.19 Ice caves in subtropical climates 6.20 Massive blocks of ice in bedrock or soil 7 Permafrost mounds 7.1 Introduction 7.2 Mounds over 2.5 m diameter 7.2.1 Mounds formed predominantly of injection ice 7.2.1.1 Pingo mounds 7.2.1.2 Hydrostatic or closed system pingos 7.2.1.3 Hydraulic or open system pingos 7.2.1.4 Pingo plateaus 7.2.1.5 Seasonal frost mounds 7.2.1.6 Icing blisters 7.2.1.7 Perennial mounds of uncertain origin 7.2.1.8 Similar mounds that can be confused with injection phenomena 7.2.2 Mounds formed dominantly by cryosuction 7.2.2.1 Paisas 7.2.2.1.1 Paisas in maritime climates 7.2.2.1.2 Paisas in cold, continental climates 7.2.2.1.3 Lithalsas 7.2.2.1.4 Palsa/Lithalsa look-alikes 7.2.3 Mounds formed by the accumulation of ice in the thawing fringe: Peat plateaus 7.3 Cryogenic mounds less than 2.5 m in diameter 7.3.1 Oscillating hummocks 7.3.2 Thufurs 7.3.3 Silt-cycling hummocks 7.3.4 Niveo-aeolian hummocks 7.3.5 Similar-looking mounds of uncertain origin 7.3.6 String bogs 7.3.7 Pounus 8 Mass wasting of fine-grained materials in cold climates 8.1 Introduction 8.2 Classification of mass wasting 8.3 Slow flows 8.3.1 Cryogenic creep 8.3.1.1 Needle ice creep 8.3.1.2 Frost heave and frost creep 8.3.1.3 Gelifluction 8.3.1.4 Other creep-type contributions to downslope movement of soil 8.3.2 Landforms produced by cryogenic slow flows in humid areas 8.3.3 Landforms developed by cryogenic flows in more arid regions 8.4 Cryogenic fast flows 8.4.1 Cryogenic debris flows 8.4.2 Cryogenic slides and slumps 8.4.3 Cryogenic composite slope failures 8.4.3.1 Active-layer detachment slides 8.4.3.2 Retrogressive thaw failures 8.4.3.3 Snow avalanches and slushflows 8.4.3.3.1 Snow avalanches 8.4.3.3.2 Slush avalanches 8.5 Relative effect in moving debris downslope in the mountains 9 Landforms consisting of blocky materials in cold climates 9.1 Introduction 9.2 Source of the blocks 9.3 Influence of rock type 9.4 Weathering products 9.5 Biogenic weathering 9.6 Fate of the soluble salts produced by chemical and biogenic weathering 9.7 Rate of cliff retreat 9.8 Landforms resulting from the accumulation of predominantly blocky materials in cryogenic climates 9.8.1 Cryogenic block fields 9.8.1.1 Measurement of rates of release of blocks on slopes 9.8.2 Cryogenic block slopes and fans 9.8.3 Classification of cryogenic talus slopes 9.8.3.1 Coarse blocky talus slopes 9.8.4 Protection of infrastructure from falling rock 9.9 Talus containing significant amounts of finer material 9.9.1 Rock glaciers 9.9.1.1 Sedimentary composition and structure of active rock glaciers 9.9.1.2 Origin of the ice in active rock glaciers 9.9.1.3 Relationship to vegetation 9.9.2 Movement of active rock glaciers 9.9.2.1 Horizontal movement 9.9.2.2 Movement of the front 9.9.3 Distribution of active rock glaciers 9.9.4 Inactive and fossil rock glaciers 9.9.5 Streams flowing from under rock glaciers 9.10 Cryogenic block streams 9.10.1 Characteristics 9.10.2 Classification 9.10.2.1

Note: Contents I Plants as Unique Organisms; History and Tools of Plant Anatomy 1 The Nature of Plants 1.1 Plants Have Multiple Pigments with Multiple Functions 1.2 Plants Use Water, and the Properties of Water, in Unique Ways 1.3 Plants Use Anabolic Metabolism to Manufacture Every Molecule Needed for Growth and Produce Virtually No Waste 1.4 Cell Walls Are Nonliving Matrices Outside the Plant Cell Membrane that House and/or Perform a Variety of Functions 1.5 The Plant Life Cycle Alternates Between a Haploid Gametophyte Stage and a Diploid Sporophyte Stage 1.6 Meristematic Activity Continues Throughout the Life of a Plant 1.7 Fruits Disperse Seeds Through Space: Dormancy Disperses Seeds Through Time 1.8 Earth’s History Is Divided into Four Major Time Periods 1.8.1 The Precambrian: 4550 to 542 mya 1.8.2 The Paleozoic Era: 542 to 251 mya 1.8.3 The Mesozoic Era: 251–66 mya 1.8.4 The Cenozoic Era: 66 mya to Present 1.9 Life on Earth Has Experienced Five Mass Extinctions: A Sixth Is in Progress 1.10 Many Plants and Animals Have Coevolved 1.11 The Plant Body Consists of Four Organs 1.11.1 Roots 1.11.2 Stems 1.11.3 Leaves 1.11.4 Flowers and Fruit 1.12 Plant Organs Are Initially Made of Three Tissues 1.13 “Plant” Can Be Broadly Defined 1.14 Bryophytes Lack Vasculature and Produce Spores 1.15 Ferns and Fern Allies Are Seedless Tracheophytes 1.16 Gymnosperms Are Seed-Producing Tracheophytes that Lack Flowers and Fruit 1.17 Monocots and Eudicots Are the Two Largest Groups of Angiosperms 1.18 Understanding Plant Structure Requires a Sense of Scale 1.19 “Primary” and “Secondary” Are Important Concepts in Plant Anatomy 1.19.1 Primary Versus Secondary Growth and Meristems 1.19.2 Primary Versus Secondary Xylem and Phloem 1.19.3 Primary Versus Secondary Cell Walls 1.20 Chapter Review References and Additional Readings 2 Microscopy and Imaging 2.1 Robert Hooke, 1635–1703, Described a Cell as the Basic Unit of Life by Studying the Bark of the Cork Oak Tree, Quercus suber 2.2 Antoni Van Leeuwenhoek, 1632–1723, Was the First Scientist to Observe Microorganisms 2.3 Nehemiah Grew, 1641–1712, Was the Father of Plant Anatomy 2.4 Robert Brown, 1773–1858, Discovered the Nucleus of the Cell by Studying Orchid Petals 2.5 Katherine Esau, 1898–1997, Advanced the Field of Plant Anatomy with Her Influential Textbooks 2.6 Light Microscopy: The Most Useful Tool of the Plant Anatomist 2.7 The Compound Light Microscope Uses Multiple Lenses to Form and Capture Images 2.8 The Resolving Power of a Lens Places Limits on Resolution and Magnification 2.9 The Confocal Microscope Allows for Sharper Detail, Computer Control, and 3-D Imaging with a Modified Compound Microscope 2.10 Electron Microscopy Allows a View into the World of Cellular Ultrastructure 2.11 The Transmission Electron Microscope Reveals Internal Cellular Detail 2.12 The Scanning Electron Microscope Resolves Surface Detail 2.13 Different Microscopies Produce Different Images of the Same Specimen 2.14 Chapter Review References and Additional Readings II Cellular Plant Anatomy 3 Plant Cell Structure and Ultrastructure 3.1 Plant Cells Are Complex Structures 3.2 Plant Cells Synthesize an External Wall and Contain a Variety of Internal Compartments 3.3 Cells and Cell Organelles Are Typically Bound by Lipid Bilayer Membranes 3.4 Vacuoles Play a Role in Water and Ion Balance 3.5 Plastids Are a Diverse Family of Anabolic Organelles 3.5.1 Proplastid 3.5.2 Etioplast 3.5.3 Elaioplast 3.5.4 Amyloplast 3.5.5 Chromoplast 3.5.6 Gerontoplast 3.5.7 Chloroplast 3.5.8 Chloroplast Functions 3.5.9 The Dimorphic Chloroplasts of C 4 Photosynthesis 3.5.10 Guard Cell Chloroplasts 3.5.11 Sun Versus Shade Chloroplasts 3.6 All Plastids Are Developmentally Related 3.7 Mitochondria Synthesize ATP and Small Carbon Skeletons 3.8 Microbodies Are the Site of Specific Biochemical Pathways 3.9 The Endoplasmic Reticulum Synthesizes Proteins and Some Lipids 3.10 The Golgi Apparatus Processes and Packages Polysaccharides and Proteins for Secretion 3.11 The Nucleus Houses the Cell’s Genetic Material and Participates in Ribosome Synthesis 3.12 The Cytoskeleton Organizes the Cell and Helps Traffic Organelles 3.13 Chapter Review References and Additional Readings 4 Mitosis and Meristems 4.1 The Plant Cell Cycle Includes Interphase, Mitosis, and Cytokinesis 4.2 A Pre-prophase Microtubule Band Precedes Mitosis and Defines the Plane of Cell Division 4.3 Mitosis May Be Divided into Distinct, but Continuous, Stages 4.4 Cytokinesis Begins with Initiation of the Cell Plate and Grows by the Deposition of Callose 4.5 Microtubules Play a Critical Role in Mitosis and Cytokinesis 4.6 Apical Meristems Are the Sites of Primary Growth 4.7 The Shoot Apical Meristem Is the Site of Lateral Organ Initiation 4.8 Axillary Buds Arise De Novo in the Developing Leaf Axis 4.9 Tunica-Corpus Organization Describes Shoot Apical Meristem Growth in Many Eudicots 4.10 Gymnosperms Do Not Possess a Tunica-Corpus 4.11 The Root Apical Meristem Provides the Primary Growth of Roots 4.12 Lateral Roots Originate from Inside the Pericycle, Not from the Root Apical Meristem 4.13 Intercalary Meristems Contribute to Stem and Leaf Growth in Monocots 4.14 Many Lower Vascular Plants Have a Single Initial Cell in the Shoot and Root Apical Meristems 4.15 Lateral Meristems Are the Site of Secondary Growth in Eudicots 4.16 Chapter Review References and Additional Readings 5 Cell Walls 5.1 Transparent Plant Cell Walls Contain Cellulose and Are Synthesized to the Exterior of the Protoplast 5.2 Primary Cell Walls Are a Structural Matrix of Cellulose and Several Other Components 5.3 Plasmodesmata Connect Adjacent Cells Via Holes in the Primary Cell Wall 5.4 Secondary Cell Walls Are Rigid, Thick, and Lignified 5.5 Pits Are Holes in the Secondary Cell Wall 5.6 Transfer Cells Have Elaborated Primary Cell Walls for High Rates of Transport 5.7 Chapter Review References and Additional Readings 6 Parenchyma, Collenchyma, and Sclerenchyma 6.1 Parenchyma Cells Are the Most Common Plant Cell Type 6.2 Parenchyma Cells May Exhibit Totipotency 6.3 Collenchyma Cells Are Used for Support and Are the Least Common Cell Type 6.4 Birefringence Is a Common Phenomenon in Collenchyma Walls 6.5 Sclerenchyma Cells Provide Support, Protection, and Long-Distance Water Transport 6.6 Fibers Impart Support and Protection 6.7 Sclereids Are Reduced Sclerenchyma Cells That Occur Singly or in Clumps 6.8 Xylem Vessel Elements Are Water-Conducting Sclerenchyma 6.9 Chapter Review References and Additional Readings III Vascular Tissues 7 Xylem 7.1 Xylem Is a Complex Tissue Containing Multiple Cell Types, Each with a Specific Structure and Function 7.2 The Primary Functions of Xylem Are Water Conduction, Mineral Transport, and Support 7.3 Tracheids Are Imperforate Tracheary Elements and the Sole Water Conductors in Gymnosperms 7.4 Angiosperm Tracheids, Fiber Tracheids, and Libriform Fibers Represent a Continuum of Imperforate Tracheary Element Design and Function 7.5 Vessel Elements Are Perforate Cells and the Main Water Conductors in Angiosperms 7.6 Vessel Element Side Walls Are Patterned for Strength and Water Movement 7.7 Most Vessel Elements End in a Perforation Plate and Are Connected to Another Vessel Element 7.8 Xylem Parenchyma Are Living Cells Involved in Xylem Metabolism and Protection 7.9 Chapter Review References and Additional Readings 8 Phloem 8.1 Phloem Is a Complex Tissue Containing Multiple Cell Types, Each with a Specific Structure and Function 8.2 Phloem’s Main Function Is Photosynthate Translocation 8.3 Sieve Tube Elements Are Living Cells Responsible for Translocation 8.4 Companion Cells Support the Sieve Tube Element and Are Involved in Phloem Loading and Unloading in Angiosperms 8.5 Phloem Parenchyma Cells Are Involved in Radial Translocation, Xylem/Phloem Coordination, and Storage 8.6 Phloem Fibers Protect the Delicate Sieve Tubes 8.7 Secondary Phloem Typically Only Functions for One Growing Season 8.8 Gymnosperm Phloem Is Simpler Than An

Note: Contents Automated Blood Cultures / Xiang Y. Han Laboratory Automation in Clinical Bacteriology / Antony Croxatto Biochemical Profile-Based Microbial Identification Systems / Safina Hafeez and Jaber Aslanzadeh Advanced Phenotypic Antimicrobial Susceptibility Testing Methods / Charles W. Stratton Rapid Microbial Antigen Tests / Sheldon Campbell and Marie L. Landry Antibody Detection: Principles and Applications / Yun F. (Wayne) Wang Procalcitonin and Other Host-Response-Based Biomarkers for Evaluation of Infection and Guidance of Antimicrobial Treatment / Philipp Schuetz, Ramon Sager, Yannick Wirz, and Beat Mueller Functional Assessment of Microbial, Viral, and Parasitic Infections Using Real-Time Cellular Analysis / Dazhi Jin, Xiao Xu, Min Zheng, Alex Mira, Brandon J. Lamarche, and Alex B. Ryder Cellular Fatty Acid-Based Microbial Identification and Antimicrobial Susceptibility Testing / Nicole Parrish and Stefan Riedel MALDI-TOF Mass Spectrometry-Based Microbial Identification and Beyond / Alexander Mellmann and Johannes Müthing Transcriptomic Techniques in Diagnostic Microbiology / Zachary E. Holcomb and Ephraim L. Tsalik The Use of Microbial Metabolites for the Diagnosis of Infectious Diseases / Mahesh J. Thalavitiya Acharige, Seena S. Koshy, and Sophia Koo Nucleic Acid Extraction and Enrichment / Jeong Hwan Shin Nonamplified Probe-Based Microbial Detection and Identification / Fann Wu, Tao Hong, and Phyllis Della-Latta Molecular Typing Techniques: State of the Art / Richard V. Goering PCR and Its Variations / Eleanor A. Powell and Michael Loeffelholz Non-PCR Amplification Techniques / Rosemary C. She, Ted E. Schutzbank, and Elizabeth M. Marlowe Real-Time and Digital PCR for Nucleic Acid Quantification / Alexander J. McAdam Direct Nucleotide Sequencing for Amplification Product Identification / Tao Hong Solid and Suspension Microarrays for Detection and Identification of Infectious Diseases / Sherry Dunbar, Janet Farhang, Shubhagata Das, Sabrina Ali, and Heng Qian Real-Time Detection of Amplification Products Through Fluorescence Quenching or Energy Transfer / Caitlin Otto and Shihai Huang PCR/Electrospray Ionization-Mass Spectrometry as an Infectious Disease Diagnostic Tool / Volkan Özenci and Kristoffer Strålin Nucleic Acid Amplicons Detected and Identified by T2 Magnetic Resonance / Jessica L. Snyder, Heather S. Lapp, Zhi-Xiang Luo, Brendan Manning, and Thomas J. Lowery Molecular Contamination and Amplification Product Inactivation / Susan Sefers and Jonathan E. Schmitz Index

Note: Contents 1 Introduction: Limits to Adaptation / Johanna Nalau and Walter Leal Filho Part I Limits to Climate Change Adaptation in Asia 2 Strategies and Barriers to Adaptation of Hazard-Prone Rural Households in Bangladesh / G. M. Monirul Alam, Khorshed Alam, Shahbaz Mushtaq, Most Nilufa Khatun and Walter Leal Filho 3 Governance Limits to Adaptation in Cambodia’s Health Sector / Daniel Gilfillan 4 Land-Based Strategic Model by Integrating Diverse Policies for Climate Change Adaptation in Nepal / Adish Khezri, Arbind Man Tuladhar and Jaap Zevenbergen 5 Climate Change and Migration in Bangladesh: Empirically Derived Lessons and Opportunities for Policy Makers and Practitioners / Johannes Luetz Part II Limits to Climate Change Adaptation in Africa 6 Limits to Climate Change Adaptation in Zimbabwe: Insights, Experiences and Lessons / Nelson Chanza 7 Pastoralists Shifting Strategies and Perceptions of Risk: Post-crisis Recovery in Damergou, Niger / Karen Marie Greenough 8 Political Limits to Climate Change Adaptation Practices: Insights from the Johannesburg Case / Karen Hetz 9 Constraints and Limits to Climate Change Adaptation Efforts in Nigeria / Idowu O. Ologeh, Joshua B. Akarakiri and Francis A. Adesina 10 Adapting Agriculture to Climate Change: Suitability of Banana Crop Production to Future Climate Change Over Uganda / Geoffrey Sabiiti, Joseph Mwalichi Ininda, Laban Ayieko Ogallo, Jully Ouma, Guleid Artan, Charles Basalirwa, Franklin Opijah, Alex Nimusiima, Saul Daniel Ddumba, Jasper Batureine Mwesigwa, George Otieno and Jamiat Nanteza 11 Local Adaptation to Climate Extremes in Domboshawa: Opportunities and Limitations / Vincent Itai Tanyanyiwa and Rejoice Madobi Part III Limits to Climate Change Adaptation in Australia, North-America and Europe 12 The Limits of Imagination / Liese Coulter 13 Climate Change Adaptation in Coastal East Arctic Ecosystems: Complexity and Challenges of Monitoring and Evaluation / Moktar Lamari, Line Poulin-Larivière and Johann L. Jacob 14 Limits to Adaptation on Climate Change in Bosnia and Herzegovina: Insights and Experiences / Goran Trbic, Davorin Bajic, Vladimir Djurdjevic, Vladan Ducic, Raduska Cupac, Đorđe Markez, Goran Vukmir, Radoslav Dekić and Tatjana Popov Part IV Limits to Climate Change Adaptation in the Pacific Region 15 Climate Change Adaptation Limits in Small Island Developing States / Stacy-ann Robinson 16 Limits to Coastal Adaptation in Samoa: Insights and Experiences / Richard Crichton and Miguel Esteban 17 Limits to Capital Works Adaptation in the Coastal Zones and Islands: Lessons for the Pacific / Brendan Mackey and Daniel Ware 18 A ‘Cost Barrier’ Perspective to Adaptation on a Coral Triangle Initiative (CTI) and Mangrove Rehabilitation Projects (MRP) in Solomon Islands / Michael Otoara Ha’apio, Walter Leal Filho and Morgan Wairiu 19 Customary Land and Climate Change Induced Relocation: A Case Study of Vunidogoloa Village, Vanua Levu, Fiji / Dhrishna Charan, Manpreet Kaur and Priyatma Singh 20 Limits to Adapting to Climate Change Through Relocations in Papua-New Guinea and Fiji / Dalila Gharbaoui and Julia Blocher 21 Atoll Habitability Thresholds / Mark H. N. Stege 22 Conclusions: Overcoming the Limits to Adaptation / Walter Leal Filho and Johanna Nalau

Note: Contents Part I Rainfall Analysis Rainfall Probability Distribution Analysis in Selected Lateral Command Area of Upper Krishna Project (Karnataka), India / N. K. Rajeshkumar, P. Balakrishnan, G. V. Srinivas Reddy, B. S. Polise Gowdar and U. Satishkumar Analyzing Rainfall and Reservoir Release Pattern for Ajwa Reservoir: A Case Study / Pushkar Sharma and Sanskriti Mujumdar Preliminary Investigations on Localized Rainfall Interception Losses Under Real Field Observations / M. L. Gaur and Saket Kumar Probabilistic Estimation of Design Daily Runoff from Bamhani Watershed, India / Sarita Gajbhiye Meshram and Vijay P. Singh Part II Evapotranspiration Development of Generalized Higher-Order Neural Network-Based Models for Estimating Pan Evaporation / Sirisha Adamala, N. S. Raghuwanshi and Ashok Mishra Sensitivity Analysis of FAO-56 Penman–Monteith Reference Evapotranspiration Estimates Using Monte Carlo Simulations / Gicy M. Kovoor and Lakshman Nandagiri Quantification of Error in Estimation of Reference Crop Evapotranspiration by Class A Pan Evaporimeter and Its Correction / S. Praharaj, P. K. Mohanty and B. C. Sahoo Part III Urban Runoff Spatial and Temporal Analyses of Impervious Surface Area on Hydrological Regime of Urban Watersheds / Tauseef A. Ansari and Y. B. Katpatal An Assessment of Hydrological Impacts Due to Changes in the Urban Sprawl in Bhopal City and its Peripheral Urban-Rural Fringe / L. Patel, S. Goyal and T. Thomas Simulation of Urban Drainage System Using Disaggregated Rainfall Data / Vinay Ashok Rangari, K. Veerendra Gopi, N. V. Umamahesh and Ajey Kumar Patel Investigation of Drainage for Structures, Lithology and Priority (Flood and Landslide) Assessment Using Geospatial Technology, J&K, NW Himalaya / Umair Ali and Syed Ahmad Ali Hydrologic Design Parameters Database for Water Harvesting Structures in Madhya Pradesh / Ramadhar Singh, Karan Singh and D. M. Bhandarkar Application of Storm Water Management Model to an Urban Catchment / V. Swathi, K. Srinivasa Raju and Ajit Pratap Singh Part IV Soil Erosion and Sediment A Study of Erosional Depositional Activity and Land Use Mapping of Majuli River Island Using Landsat Data / Dipsikha Devi, Nilutpal Phukan and Bibhash Sarma Study of Soil Erosion and Deposition Around an Island in a Natural Stream / Snigdhadip Ghosh, Saptarshi Das and Vijay Kumar Dwivedi Impact Assessment of Alternate Land Cover and Management Practices on Soil Erosion: A Case Study / T. R. Nayak, R. K. Jaiswal, R. V. Galkate and T. Thomas Geostatistical Analysis of River Sedimentation Behavior in Kerala State / Mathew K. Jose, T. Chandramohan, B. K. Purandara and B. Venkatesh Study of Mineralogical Composition of Sediment in Brahmaputra River in Urban Stretch of Guwahati City, Assam, India / Mamata Das and Triptimoni Borah Part V Remote Sensing and GIS Applications Hypsometric Analysis for Assessing Erosion Status of Watershed Using Geographical Information System / S. K. Sharma, S. Gajbhiye, S. Tignath and R. J. Patil Assessment of Different Bathymetry Statistical Models Using Landsat-8 Multispectral Images / Omar Makboul, Abdelazim Negm, Saleh Mesbah and Mohamed Mohasseb Estimation of Minimum and Maximum Air Temperature Using MODIS Remote Sensing Imagery and Geographical Information System (GIS) / P. Sardhara Bharatkumar, P. Dholariya Jay, M. K. Tiwari and M. L. Gaur A RS and GIS Approaches for the Estimation of Runoff and Soil Erosion in SA-13 Watershed / H. N. Bhange and V. V. Deshmukh Rainwater Harvesting Structure Site Suitability Using Remote Sensing and GIS / B. K. Gavit, R. C. Purohit, P. K. Singh, Mahesh Kothari and H. K. Jain Land Surface Temperature Estimation Using Remote Sensing Data / Vijay Solanky, Sangeeta Singh and S. K. Katiyar Watershed Prioritization of Wardha River Basin, Maharashtra, India Using Morphometric Parameters: A Remote Sensing and GIS-Based Approach / B. S. Manjare, S. Khan, S. A. Jawadand and M. A. Padhye Flood Assessment of Lolab Valley from Watershed Characterization Using Remote Sensing and GIS Techniques / Mannan Bashir Wani, Syed Ahmad Ali and Umair Ali Delineation of Paleochannels in Periyar River Basin of Kerala Using Remote Sensing and Electrical Resistivity Methods / C. P. Priju, Jiby Francis, P. R. Arun and N. B. Narasimha Prasad Application of EO-1 Hyperion Data for Mapping and Discrimination of Agricultural Crops / H. Ramesh and P. P. Soorya Geomatica-Based Approach for Automatic Extraction of Lineaments from ASTER-GDEM Data, in Part of Al-Rawdah, Shabwah, Southeast Yemen / Mohammed Sultan Alshayef and Akram Javed Part VI Watershed Runoff and Floods Morpho-Mathematical Analysis of Bharar River Basin District Chhatarpur-Central India / Pradeep Kumar Jain Application of Principal Component Analysis for Grouping of Morphometric Parameters and Prioritization of Watershed / Sarita Gajbhiye Meshram and S. K. Sharma Velocity Distribution in Vortex Chamber at High Water Abstraction Ratio / Mohammad Athar and Shivani Srotriya Performance Appraisal of Friction Factor Estimators / Abhishek Mishra, Aditya Deshpande and Bimlesh Kumar Experimental Investigations of Wave Height Attenuation by Submerged Artificial Vegetation / Beena Mary John, I. Mohit Babu, Kiran G. Shirlal and Subba Rao Developing Rating Curves for Nubia Lake, Sudan, Using RS/GIS / Mohamed Elsahabi, Abdelazim Negm and Kamal Ali A Spreadsheet Approach for Prediction of Rating Curve Parameters / Mohammad Muzzammil, Javed Alam and Mohammad Zakwan Experimental Study on Role of Emergent Artificial Coastal Vegetation in Controlling Wave Run Up / Beena Mary John, R. T. Arun Vignesh, Kiran G. Shirlal and Subba Rao Development of Regional Soil Water Retention (SWR) Characteristics / R. K. Jaiswal, T. Thomas, R. V. Galkate, S. Singh and J. V. Tyagi Revision of Empirical Coefficients of Commonly Used Flood Formulae Using Flow Data from Karnataka Rivers / T. Chandramohan, Mathew K. Jose, B. K. Purandara and B. Venkatesh Reservoir Inflow Forecasting Using Extreme Learning Machines / Mukesh Kumar Tiwari and Sanjeet Kumar Quantifying Discontinuity, Connectivity, Variability, and Hierarchy in Overland Flow Generation: Comparison of Different Modeling Methods / Xuefeng Chu Nondimensional UH-Based Smoothing of S-Curve-Derived UH Oscillations / P. R. Patil, S. K. Mishra, Nayan Sharma and Vijay P. Singh Fuzzy-Based Comprehensive Evaluation of Environmental Flow Alteration / Kairong Lin, Fan Zhang, Qiang Zhang, Xinjun Tu and Yang Hu Part VII Watershed Modeling Spatial Characters of a Tropical River Basin, South-West Coast of India / Girish Gopinath, N. Ramisha, Ajith G. Nair and N. P. Jesiya Streamflow Estimation Using SWAT Model Over Seonath River Basin, Chhattisgarh, India / Sabyasachi Swain, Mani Kant Verma and M. K. Verma Revisiting the Soil Conservation Service Curve Number Method / S. K. Mishra, Vijay P. Singh and P. K. Singh Hydrological Impacts of Rejuvenating Degraded Hilly Watershed in Shivalik Region / A. K. Tiwari and V. K. Bhatt Modeling of a River Basin Using SWAT Model / B. Venkatesh, T. Chandramohan, B. K. Purandara, Mathew K. Jose and P. C. Nayak Performance of the Xinanjiang Model / A. Ahirwar, M. K. Jain and M. Perumal

Note: Contents Part I Introduction 1 Machine Learning in Wildlife Biology: Algorithms, Data Issues and Availability, Workflows, Citizen Science, Code Sharing, Metadata and a Brief Historical Perspective / Grant R. W. Humphries and Falk Huettmann 2 Use of Machine Learning (ML) for Predicting and Analyzing Ecological and ‘Presence Only’ Data: An Overview of Applications and a Good Outlook / Falk Huettmann, Erica H. Craig, Keiko A. Herrick, Andrew P. Baltensperger, Grant R. W. Humphries, David J. Lieske, Katharine Miller, Timothy C. Mullet, Steffen Oppel, Cynthia Resendiz, Imme Rutzen, Moritz S. Schmid, Madan K. Suwal, and Brian D. Young 3 Boosting, Bagging and Ensembles in the Real World: An Overview, some Explanations and a Practical Synthesis for Holistic Global Wildlife Conservation Applications Based on Machine Learning with Decision Trees / Falk Huettmann Part II Predicting Patterns 4 From Data Mining with Machine Learning to Inference in Diverse and Highly Complex Data: Some Shared Experiences, Intellectual Reasoning and Analysis Steps for the Real World of Science Applications / Falk Huettmann 5 Ensembles of Ensembles: Combining the Predictions from Multiple Machine Learning Methods / David J. Lieske, Moritz S. Schmid, and Matthew Mahoney 6 Machine Learning for Macroscale Ecological Niche Modeling - a Multi-Model, Multi-Response Ensemble Technique for Tree Species Management Under Climate Change / Anantha M. Prasad 7 Mapping Aboveground Biomass of Trees Using Forest Inventory Data and Public Environmental Variables within the Alaskan Boreal Forest / Brian D. Young, John Yarie, David Verbyla, Falk Huettmann, and F. Stuart Chapin III Part III Data Exploration and Hypothesis Generation with Machine Learning 8 ‘Batteries’ in Machine Learning: A First Experimental Assessment of Inference for Siberian Crane Breeding Grounds in the Russian High Arctic Based on ‘Shaving’ 74 Predictors / Falk Huettmann, Chunrong Mi, and Yumin Guo 9 Landscape Applications of Machine Learning: Comparing Random Forests and Logistic Regression in Multi-Scale Optimized Predictive Modeling of American Marten Occurrence in Northern Idaho, USA / Samuel A. Cushman and Tzeidle N. Wasserman 10 Using Interactions among Species, Landscapes, and Climate to Inform Ecological Niche Models: A Case Study of American Marten (Martes americana) Distribution in Alaska / Andrew P. Baltensperger 11 Advanced Data Mining (Cloning) of Predicted Climate-Scapes and Their Variances Assessed with Machine Learning: An Example from Southern Alaska Shows Topographical Biases and Strong Differences / Falk Huettmann 12 Using TreeNet, a Machine Learning Approach to Better Understand Factors that Influence Elevated Blood Lead Levels in Wintering Golden Eagles in the Western United States / Erica H. Craig, Tim H. Craig, and Mark R. Fuller Part IV Novel Applications of Machine Learning Beyond Species Distribution Models 13 Breaking Away from ‘Traditional’ Uses of Machine Learning: A Case Study Linking Sooty Shearwaters (Ardenna griseus) and Upcoming Changes in the Southern Oscillation Index / Grant R. W. Humphries 14 Image Recognition in Wildlife Applications / Dawn R. Magness 15 Machine Learning Techniques for Quantifying Geographic Variation in Leach’s Storm-Petrel (Hydrobates leucorhous) Vocalizations / Grant R. W. Humphries, Rachel T. Buxton, and Ian L. Jones Part V Implementing Machine Learning for Resource Management 16 Machine Learning for ‘Strategic Conservation and Planning’: Patterns, Applications, Thoughts and Urgently Needed Global Progress for Sustainability / Falk Huettmann 17 How the Internet Can Know What You Want Before You Do: Web-Based Machine Learning Applications for Wildlife Management / Grant R. W. Humphries 18 Machine Learning and ‘The Cloud’ for Natural Resource Applications: Autonomous Online Robots Driving Sustainable Conservation Management Worldwide? / Grant R. W. Humphries and Falk Huettmann 19 Assessment of Potential Risks from Renewable Energy Development and Other Anthropogenic Factors to Wintering Golden Eagles in the Western United States / Erica H. Craig, Mark R. Fuller, Tim H. Craig, and Falk Huettmann Part VI Conclusions 20 A Perspective on the Future of Machine Learning: Moving Away from ‘Business as Usual’ and Towards a Holistic Approach of Global Conservation / Grant R. W. Humphries and Falk Huettmann Index

Note: Contents Part I Introduction to the Central Nervous System 1 Introduction to the Central Nervous System 1.1 The Neuron 1.2 The Nervous System 1.2.1 Peripheral Nervous System (Fig. 1.3) 1.2.2 Central Nervous System Bibliography 2 Neurocytology: Cells of the CNS 2.1 The Neuron 2.1.1 Dendrites 2.1.2 Soma 2.1.3 Golgi Type I and II Neurons 2.1.4 Dendritic Spines (Fig. 2.2) 2.1.5 Nucleus 2.1.6 Neuronal Cytoskeleton 2.1.7 Microtubules and Axoplasmic Flow 2.1.8 Neurofibrillary Tangles 2.2 Synapse 2.2.1 Synaptic Structure 2.2.2 Synaptic Types 2.2.3 Synaptic Transmission 2.2.4 Neurotransmitters (Table 2.3) 2.2.5 Modulators of Neurotransmission 2.2.6 Synaptic Vesicles (Fig. 2.16) (Table 2.4) 2.2.7 Effectors and Receptors 2.3 Supporting Cells of the Central Nervous System 2.3.1 Astrocytes (Figs. 2.6 and 2.14; Table 2.7) 2.3.2 Oligodendrocytes (Fig. 2.9) 2.3.3 Endothelial Cells 2.3.4 Mononuclear Cells: Monocytes and Microglia 2.3.5 Ependymal Cells (Fig. 2.20) 2.3.6 Supporting Cells in the Peripheral Nervous System 2.4 Response of the Nervous System to Injury 2.4.1 Degeneration 2.5 Regeneration 2.5.1 Peripheral Nerve Regeneration 2.5.2 Regeneration in the Central Nervous System 2.5.3 Neurogenesis in the Adult Brain Stem 2.5.4 Nerve Growth Factors (NGF) 2.5.5 Glial Response to Injury 2.6 Blood–Brain Barrier 2.6.1 Blood–Brain Barrier (Fig. 2.24) 2.6.2 Extracellular Space Specific References 3 Neuroembryology and Congenital Malformations 3.1 Formation of the Central Nervous System 3.2 Histogenesis 3.2.1 Repair of Damaged Nervous System 3.2.2 Growth Cone Guidance 3.2.3 Programmed Cell Death (PCD): Apoptosis 3.2.4 Neuronal Death 3.2.5 Development of Blood Vessels in the Brain 3.2.6 Ventricular System 3.2.7 Formation of Peripheral Nervous System 3.2.8 Spinal Cord Differentiation 3.3 Brain Differentiation 3.3.1 Rhombencephalon (Hindbrain) 〉 Pons, Medulla, and Cerebellum 3.3.2 Mesencephalon 〉 Adult Midbrain 3.3.3 Prosencephalon 〉 Cerebral Hemispheres and Diencephalon 3.3.4 Diencephalon 3.3.5 Cranial Nerves 3.3.6 Telencephalon 3.3.7 Primary Sulci 3.3.8 Development of the Cerebral Cortex 3.4 Prenatal Development of the Cerebral Cortex 3.5 Changes in the Cortical Architecture as a Function of Postnatal Age 3.6 Abnormal Development 3.6.1 Malformations Resulting from Abnormalities in Growth and Migration with Incomplete Development of the Brain 3.6.2 Genetically Linked Migration Disorders 3.6.3 Environmentally Induced Migration Disorder: Fetal Alcohol Syndrome 3.6.4 Malformations Resulting from Chromosomal Trisomy and Translocation 3.6.5 Malformations Resulting from Defective Fusion of Dorsal Structures 3.6.6 Malformations Characterized by Excessive Growth of Ectodermal and Mesodermal Tissue Affecting the Skin, Nervous System, and Other Tissues 3.6.7 Cutaneous Angiomatosis with Associated Malformations of the Central Nervous System 3.6.8 Malformations Resulting from Abnormalities in the Ventricular System Bibliography 4 Spinal Cord 4.1 Gross Anatomy 4.1.1 Spinal Cord: Structure and Function 4.1.2 Nerve Roots 4.1.3 Gray Matter 4.2 Interneurons 4.3 Central Pattern Generators 4.4 Segmental Function 4.4.1 Motor/Ventral Horn Cells 4.4.2 Sensory Receptors 4.4.3 Stretch Receptors 4.5 Nociception and Pain 4.5.1 Modulation of Pain Transmission 4.6 White Matter Tracts 4.6.1 Descending Tracts in the Spinal Cord 4.6.2 Ascending Tracts in the Spinal Cord 4.6.3 The Anterolateral Pathway 4.7 Upper and Lower Motor Neurons Lesions 4.7.1 Upper Motor Neuron Lesion (UMN) 4.7.2 Lower Motor Neuron Lesion 4.8 Illustrative Spinal Cord Case Histories 4.9 Illustrative Non-spinal Cord Cases with Involvement of Specific Peripheral Nerves: Case Histories 4.8–4.10 4.10 Carpal Tunnel Syndrome Bibliography 5 Brain Stem: Gross Anatomy 5.1 Gross Anatomical Divisions 5.1.1 Sites of Transition 5.2 Relationship of Regions in the Brain to the Ventricular System: Fig. 5.2 5.3 Gross Anatomy of Brain Stem and Diencephalon 5.3.1 Anterior Surface of Gross Brain Stem: Fig. 5.3 5.3.2 Posterior Surface of Brain Stem and Diencephalon: Fig. 5.4 5.4 Arterial Blood Supply to the Brain Stem and Diencephalon (Fig. 5.5) 5.4.1 Medulla 5.4.2 Pons 5.4.3 Midbrain 5.4.4 Diencephalon Bibliography 6 Brain Stem Functional Localization 6.1 Introduction to the Brain Stem 6.2 Differences Between the Spinal Cord and Brain Stem 6.3 Functional Localization in Brain Stem Coronal Sections and an Atlas of the Brain Stem 6.3.1 Medulla 6.3.2 Pons-Blood Supply: Basilar Artery and Its Branches 6.3.3 Midbrain Blood Supply: Basila Arrteraynd Posterio Crerebral Arteries 6.4 Midbrain Tectum 6.5 Midbrain Tegmentum 6.6 Superior Colliculus 6.6.1 Midbrain Tegmentum 6.6.2 Blood Supply: Posterior Cerebral Arteries 6.7 Superior Colliculus Tectum 6.8 Superior Colliculus Tegmentum 6.8.1 Superior ColliculusVentricular Zone 6.9 Functional Centers in the Brain Stem 6.9.1 Reticular Formation 6.9.2 Respiration Centers 6.9.3 Cardiovascular Centers 6.9.4 Deglutition 6.9.5 Vomiting 6.9.6 Emetic Center 6.9.7 Coughing 6.9.8 Taste 6.10 Localiozation of Dysfunction in the Cranial Nerves Associated with the Eye (Table 6.8) 6.11 Localization of Disease Processes in the Brain Stem 6.11.1 Exercise to Identify the Tracts and Nuclei in the Brain Stem (Figs. 6.10–6.14) Bibliography 7 The Cranial Nerves 7.1 How the Cranial Nerves Got Their Numbers 7.2 Functional Organization of Cranial Nerves 7.3 The Individual Cranial Nerves 7.3.1 Cranial Nerve I, Olfactory (Fig. 7.4), Special Sensory/Special Visceral Afferent 7.3.2 Cranial Nerve II, Optic (Fig. 7.5), Special Somatic Sensory 7.3.3 Cranial Nerve III, Oculomotor (Fig. 7.6), Pure Motor (Somatic and Parasympathetic, Only III) 7.3.4 Cranial Nerve IV, Trochlear (Fig. 7.6), Pure Motor 7.3.5 Cranial Nerve VI, Abducens (Fig. 7.6), Pure Motor 7.3.6 Cranial Nerve V, Trigeminal (Fig. 7.7), Mixed Nerve (Sensory and Motor but No Parasympathetic) 7.3.7 Cranial Nerve VII, Facial (Fig. 7.8), Mixed Nerve (Sensory, Motor, Parasympathetic) 7.3.8 Cranial Nerve VIII, Vestibulocochlear (Fig. 7.9), Pure Special Somatic Sensory 7.4 Auditory Pathway 7.4.1 Cranial Nerve IX, Glossopharyngeal (Fig. 7.13), Mixed (Sensory, Motor, Parasympathetic): Nerve to Third Pharyngeal Arch 7.4.2 Cranial Nerve X, Vagus (Fig. 7.14), Mixed (Sensory, Motor, Parasympathetic), and Longest Cranial Nerve 7.4.3 Cranial Nerve XI, Spinal Accessory (Fig. 7.15), Pure Motor: Somatic and Visceral 7.4.4 Cranial Nerve XII, Hypoglossal (Fig. 7.16): Pure Motor Nerve 7.5 Cranial Nerve Dysfunction 7.6 Cranial Nerve Case Histories Bibliography 8 Diencephalon 8.1 Overview 8.2 Functional Organization of Thalamic Nuclei (Table 8.1) 8.2.1 Sensory and Motor Relay Nuclei: The Ventrobasal Complex and Lateral Nucleus 8.2.2 Limbic Nuclei: The Anterior, Medial, Lateral Dorsal, Midline, and Intralaminar Nuclei (Fig. 8.4) 8.2.3 Specific Associational: Polymodal/Somatic Nuclei, the Pulvinar Nuclei (Fig. 8.5) 8.2.4 Special Somatic Sensory Nuclei: Vision and Audition, the Lateral Geniculate and Medial Geniculate Nuclei of the Metathalamus (Fig. 8.5): The Special Somatic Sensory Cranial Nerves Are Cranial Nerves II and VIII 8.2.5 Nonspecific Associational 8.3 White Matter of the Diencephalon 8.4 Relationship Between the Thalamus and the Cerebral Cortex (Figs. 8.7 and 8.8) 8.5 Subthalamus (Fig. 8.3) 8.6 Thalamic Atlas Figs. 8.10, 8.11, and 8.12 8.7 Level: Midbrain, Diencephalic Junction (Fig. 8.10) 8.8 Level: Midthalamus (Fig. 8.11) 8.9 Level: Anterior Tubercle of Thalamus (Fig. 8.12) Bibliography 9 Hypothalamus, Neuroendocrine System, and Autonomic Nervous System 9.1 Hypothalamus 9.1.1 Hypothalamic Nuclei 9.1.2 Afferent Pathways 9.1.3 Efferent Pathways (Fig. 9.6) 9.1.4 Functional Stability 9.2 Neuroendocrine System, the Hypothalamus, and Its Relation to the Hypophysis 9.2.1 Hypophysis Cerebri 9.2.2 Hypothalamic–Hypophyseal Portal System 9.2.3 Hypophysiotrophic Area 9.2.4 Hormones Produced by Hypothalamus 9.2.5 Hormones Produced in Adenohypophysis (Fig. 9.12) 9.2.6 Case 9.1 9.2.7 Hypothalamus and the Autono