ALBERT

Note: Contents: Preface. - 1 Introduction and datatypes. - 1.1 Why ordination?. - 1.2 Datatypes. - 1.3 Data transformation and standardisation. - 1.4 Missing values. - 1.5 Types of analyses. - 2 Using Canoco 5. - 2.1 Philosophy of Canoco 5. - 2.2 Data import and editing. - 2.3 Defining analyses. - 2.4 Visualising results. - 2.5 Beware, CANOCO 4.x users!. - 3 Experimental design. - 3.1 Completely randomised design. - 3.2 Randomised complete blocks. - 3.3 Latin square design. - 3.4 Pseudo replicates. - 3.5 Combining more than one factor. - 3.6 Following the development of objects in time: repeated observations. - 3.7 Experimental and observational data. - 4 Basics of gradient analysis. - 4.1 Techniques of gradient analysis. - 4.2 Models of response to gradients. - 4.3 Estimating species optima by weighted averaging. - 4.4 Calibration. - 4.5 Unconstrained ordination. - 4.6 Constrained ordination. - 4.7 Basic ordination techniques. - 4.8 Ordination axes as optimal predictors. - 4.9 Ordination diagrams. - 4.10 Two approaches. - 4.11 Testing significance of the relation with explanatory variables. - 4.12 Monte Carlo permutation tests for the significance of regression. - 4.13 Relating two biotic communities. - 4.14 Community composition as a cause: using reverse analysis. - 5.1 Permutation tests: the philosophy. - 5.2 Pseudo-F statistics and significance. - 5.3 Testing individual constrained axes. - 5.4 Tests with spatial or temporal constraints. - 5.5 Tests with hierarchical constraints. - 5.6 Simple versus conditional effects and stepwises election. - 5.7 Variation partitioning. - 5.8 Significance adjustment for multiple tests. - 6 Similarity measures and distance-based methods. - 6.1 Similarity measures for presence-absence data. - 6.2 Similarity measures for quantitative data. - 6.3 Similarity of cases versus similarity of communities. - 6.4 Similarity between species in trait values. - 6.5 Principal coordinates analysis. - 6.6 Constrained principal coordinates analysis (db-RDA). - 6.7 Non-metric multidimensional scaling. - 6.8 Mantel test. - 7.1 Example data set properties. - 7.2 Non-hierarchical classification (K-means clustering). - 7.3 Hierarchical classification. - 7.4 TWINSPAN. - 8 Regression methods. - 8.1 Regression models in general. - 8.2 General linear model: terms. - 8.3 Generalized linear models (GLM). - 8.4 Loess smoother. - 8.5 Generalized additive models (GAM). - 8.6 Mixed-effect models (LMM, GLMM and GAMM). - 8.7 Classification and regression trees (CART). - 8.8 Modelling species response curves with Canoco. - 9 Interpreting community composition with functional traits. - 9.1 Required data. - 9.2 Two approaches in traits - environment studies. - 9.3 Community-based approach. - 9.4 Species-based approach. - 10 Advanced use of ordination. - 10.1 Principal response curves (PRC). - 10.2 Separating spatial variation. - 10.3 Linear discriminant analysis. - 10.4 Hierarchical analysis of community variation. - 10.5 Partitioning diversity indices into alpha and beta components. - 10.6 Predicting community composition. - 11 Visualising multivariate data. - 11.1 Reading ordination diagrams of linear methods. - 11.2 Reading ordination diagrams of unimodal methods. - 11.3 Attribute plots. - 11.4 Visualising classification, groups, and sequences. - 11.5 T-value biplot. - 12 Case study 1: Variation in forest bird assemblages. - 12.1 Unconstrained ordination: portraying variation in bird community. - 12.2 Simple constrained ordination: the effect of altitude on bird community. - 12.3 Partial constrained ordination: additional effect of other habitat characteristics. - 12.4 Separating and testing alpha and beta diversity. - 13 Case study 2: Search for community composition patterns and their environmental correlates: vegetation of spring meadows. - 13.1 Unconstrained ordination. - 13.2 Constrained ordination. - 13.3 Classification. - 13.4 Suggestions for additional analyses. - 13.5 Comparing two communities. - 14 Case study 3: Separating the effects of explanatory variables. - 14.1 Introduction. - 14.2 Data. - 14.3 Changes in species richness and composition. - 14.4 Changes in species traits. - 15 Case study 4: Evaluation of experiments in randomised complete blocks. - 15.1 Introduction. - 15.2 Data. - 15.3 Analysis. - 15.4 Calculating ANOVA using constrained ordination. - 16 Case study 5: Analysis of repeated observations of species composition from a factorial experiment. - 16.1 Introduction. - 16.2 Experimental design. - 16.3 Data coding and use. - 16.4 Univariate analyses. - 16.5 Constrained ordinations. - 16.6 Principal response curves. - 16.7 Temporal changes across treatments. - 16.8 Changes in composition of functional traits. - 17 Case study 6: Hierarchical analysis of crayfish community variation. - 17.1 Data and design. - 17.2 Differences among sampling locations. - 17.3 Hierarchical decomposition of community variation. - 18 Case study 7: Analysis of taxonomic data with discriminant analysis and distance-based ordination. - 18.1 Data. - 18.2 Summarising morphological data with PCA. - 18.3 Linear discriminant analysis of morphological data. - 18.4 Principal coordinates analysis of AFLP data. - 18.5 Testing taxon differences in AFLP data using db-RDA. - 18.6 Taking populations into account. - 19 Case study 8: Separating effects of space and environment on oribatid community with PCNM. - 19.1 Ignoring the space. - 19.2 Detecting spatial trends. - 19.3 All-scale spatial variation of community and environment. - 19.4 Variation partitioning with spatial predictors. - 19.5 Visualising spatial variation. - 20 Case study 9: Performing linear regression with redundancy analysis. - 20.1 Data. - 20.2 Linear regression using program R. - 20.3 Linear regression with redundancy analysis. - 20.4 Fitting generalized linear models in Canoco. - Appendix A Glossary. - Appendix B Sample data sets and projects. - Appendix C Access to Canoco and overview of other software. - Appendix D Working with R. - References. - Index to useful tasks in Canoco 5. - Subject index.

Note: Contents: F–1. GLACIERS OF THE FORMER SOVIET UNION / VLADIMIR M. KOTLYAKOV, with contributions from A.M. DYAKOVA (Siberia), V.S. KORYAKIN (Russian Arctic Islands), V.I. KRAVTSOVA (Caucasus, Altay), G.B. OSIPOVA (Tien Shan), G.M. VARNAKOVA (Pamirs and Alai Range), V.N. VINOGRADOV (Kamchatka), O.N. VINOGRADOV (Caucasus), and N.M. ZVERKOVA (Ural Mountains and Taymyr Peninsula) Sections on FLUCTUATIONS OF GLACIERS OF THE CENTRAL CAUCASUS AND GORA EL’BRUS (With a subsection on THE GLACIOLOGICAL DISASTER IN NORTH OSETIYA / VLADIMIR M. KOTLYAKOV, O.V. ROTOTAEVA, and G.A. NOSENKO INVESTIGATIONS OF THE FLUCTUATIONS OF SURGE-TYPE GLACIERS IN THE PAMIRS BASED ON OBSERVATIONS FROM SPACE / VLADIMIR M. KOTLYAKOV, G.B. OSIPOVA, and D.G. TSVETKOV THE GLACIOLOGY OF THE RUSSIAN HIGH ARCTIC FROM LANDSAT IMAGERY / J.A. DOWDESWELL, E.K. DOWDESWELL, M. WILLIAMS, and A.F. GLAZOVSKII F–2. GLACIERS OF CHINA / SHI YAFENG, MI DESHENG, YAO TANDONG, ZENG QUNZHU, and LIU CHAOHAI F–3 GLACIERS OF AFGHANISTAN / JOHN E. SHRODER , JR ., and MICHAEL P. BISHOP F–4 GLACIERS OF PAKISTAN / JOHN E. SHRODER , JR ., and MICHAEL P. BISHOP F–5 GLACIERS OF INDIA / CHANDER P. VOHRA Updated supplement on A STUDY OF SELECTED GLACIERS UNDER THE CHANGING CLIMATE REGIME / SYED IQBAL HASNAIN, RAJESH KUMAR , SAFARAZ AHMAD, and SHRESTH TAYAL F–6 GLACIERS OF NEPAL — GLACIER DISTRIBUTION IN THE NEPAL HIMALAYA WITH COMPARISON TO THE KARAKORAM RANGE / KEIJI HIGUCHI, OKITSUGU WATANABE, HIROJI FUSHIMI, SHUHEI TAKENAKA, and AKIO NAGOSHI, Supplement by YUTAKA AGETA F–7 GLACIERS OF BHUTAN / SHUJI IWATA F–8 THE PALEOENVIRONMENTAL RECORD PRESERVED IN MIDDLE-LATITUDE, HIGH-MOUNTAIN GLACIERS: AN OVERVIEW OF U.S. GEOLOGICAL SURVEY RESEARCH IN CENTRAL ASIA AND THE UNITED STATES / L. DeWAYNE CECIL, DAVID L. NAFTZ, PAUL F. SCHUSTER , DAVID D. SUSONG, and JAROMY R . GREEN

Note: Zugl.: Potsdam, Univ., Diss., 2006

Note: Zugl.: Bremen, Univ., Diss., 2006

Note: Enthaltener Beitrag: Russian-German Cooperation SYSTEM LAPTEV SEA: The Expedition COAST I / edited by Paul Overduin , Enthaltener Beitrag: The Expedition Lena 2005 / edited by Lutz Schirrmeister, Dirk Wagner, Mikhail N. Grigoriev and Dimitry Yu. Bolshiyanov , Enthaltener Beitrag: Russian-German cooperation Yakutsk - Potsdam: the expedition CENTRAL YAKUTIA 2005 / edited by Bernhard Diekmann, Sebastian Wetterich and Frank Kienast , Contents for "Russian-German Cooperation SYSTEM LAPTEV SEA: The Expedition COAST I" The Expedition COAST I 1. Background and Objectives 2. Logistics and Itinerary 3. Field Methods and Sample Recovery 3.1 Coring 3.2 Pore water analyses 3.3 Temperature profiles 4. Sample lists , Contents for "The Expedition Lena 2005" The Expedition Lena 2005 1. Introduction 2. Expedition itinerary and general logistics 3. Microbiological processes, trace gas fluxes and hydrobiology in permafrost ecosystems of the Lena Delta 3.1 Introduction 3.2 Dynamic of methane oxidising communities in permafrost soils 3.2.1 Introduction 3.2.2 Sampling procedure and field parameters 3.2.3 Pore water methane concentration 3.2.4 Sample processing and analyses 3.3 Microbial studies on nitrification from permafrost environments 3.3.1 Introduction 3.3.2 Field experiments: Impact of polygonal soil parameter on nitrification 3.4 Closed chamber measurements of carbon exchange between Arctic tundra and the atmosphere 3.5 Micrometeorological measurements of energy, water, and carbon exchange between Arctic tundra and the atmosphere 3.6 Energy and water budget of permafrost soils – long time meteorology and soil survey station on Samoylov Island 3.7 Isotopic Studies on the 13C-fractionation during CH4-production in polygonal and thermokarst lakes of the Lena Delta 3.7.1 Introduction and methods 3.7.2 Preliminary results and further plans 3.8 Hydrobiological investigations on Samoylov Island 3.8.1 Objectives 3.8.2 Research tasks 3.8.3 Material and methods 3.8.4 Preliminary results 3.9 References 4. Studies of periglacial landscape dynamics and surface characteristics studies in the western Lena Delta 4.1. Scientific background and objectives 4.2. Geological and geographical characteristics 4.3. Studies of oriented lakes and thermokarst depressions 4.3.1 Background 4.3.2 Study area 4.3.3 Topographical and geomorphological settings 4.3.3.1 Depressions 1, 2 and 3 4.3.3.2 Depression 4 4.3.3.3 Depression 5 4.3.4 Bathymetrical surveys 4.3.5 Field sampling 4.4. Characteristics and spectral properties of periglacial landforms 4.4.1 Introduction 4.4.2 Methods 4.4.3 First results 4.5. Studies of permafrost sequences for paleo-environmental reconstruction 4.5.1 The “Arga-Sands” on Turakh Island 4.5.1.1 Exposure Tur-1 4.5.1.2 Core Tur-2 4.5.1.3 Exposure T021 4.5.2 Sand sequences of Ebe Basyn Sise Island 4.5.2.1 Exposure Ebe-4 4.5.2.2 Exposure Ebe-2 4.5.2.3 Exposure Ebe-3 4.5.2.4 Exposure Ebe-5 4.5.3 Sand and Ice Complex sequences of Khardang Island 4.5.3.1 The sand deposits in the exposure Kha-1 4.5.3.2 The sequence Kha-2 4.5.3.3 Exposure Kha-3: large ice wedge and surrounding sediments 4.6 Subsurficial and bathymetrical Ground Penetrating Radar (GPR) Investigations 4.6.1 Subsurface mapping of the Arga sands stratigraphical unit 4.6.1.1 GPR survey configuration 4.6.1.2 Transects at exposure Ebe-4 4.6.1.3 Transects at exposure/borehole Tur-1/Tur-2 4.6.2 Arynskaya Channel bathymetry 4.7 Measuring of local weather and soil conditions by soil probe and weather station 4.8 Palaeontological collection of the “Mammoth” fauna from the museum of the Lena Delta Reserve 4.9 References 4.10 Appendices chapter 4 Appendix 4-1: Field spectrometry – description of measuring points and profiles (see chapter 4.4) Appendix 4-2: List of sediment samples (see chapter 4.5) Appendix 4-3: Modern soil profiles and surface samples Appendix 4-4: List of ground ice and surface water samples Appendix 4-5. Bone collection of the expedition LENA 2005 Appendix 4-6: Bone collection of Lena Delta Reserve Tiksi (see chapter 4.8) 5. Holocene ice wedges of the 1st Lena terrace 5.1 Introduction 5.2 Outcrops 5.2.1 Outcrop 1 5.2.2 Outcrop 2 5.2.3 Geocryolithology on Samoylov Island: General impressions 5.2.4 Outcrop 3 5.2.5 Outcrop 4 5.2.6 Outcrop 5 5.2.7 Outcrop 6 5.2.8 Outcrop 7 5.2.9 Outcrop 8 5.2.10 Outcrop 9 5.2.11 Outcrop 10 5.2.12 Pingo at Olenyekskaya Channel 5.2.13 Summary 5.3 Studies on recent cryogenesis on Samoylov Island 5.4 References 5.5 Appendices chapter 5 Appendix 5-1: Ice sample list Appendix 5-2: List of sediment samples and ice content measurement Appendix 5-3: List of water samples 6. Report of the hydrological work in the Lena River Delta in August 2005 6.1 Introduction 6.2 Methods 6.3 Preliminary results 6.4 Conclusion , Contents for "Russian-German cooperation Yakutsk - Potsdam: the expedition CENTRAL YAKUTIA 2005" Central Yakutia 2005 1. Expedition ‘Verkhoyansk 2005’ • Limnogeological studies at Lake Billyakh, Verkhoyansk Mountains, Yakutia 1.1 Introduction 1.2 Regional Setting of Lake Billyakh 1.3 Itinerary 1.4 Methods 1.4.1 Bathymetric measurements 1.4.2 Water sampling and measurements 1.4.3 Sediment coring 1.5 Results 1.5.1 Bathymetry 1.5.2 Water profiles 1.5.3 Sediment cores 1.6 Outlook 1.7 References 2 Limnological studies in Central and North-east Yakutia in summer 2005 2.1 Introduction 2.2 Study sites and lake types 2.3 Material and methods 2.4 Preliminary results 2.5 Outlook 2.6 References 2.7 Appendices Appendix 2-1: General characteristics and geographical position of the studied lakes in Central and North-east Yakutia Appendix 2-2: Some properties of the studied lakes in Central and North-east Yakutia, obtained during the fieldwork (unfilled table cells imply no data or information) Appendix 2-3: Sample list for further analyses on sediments, hydro-chemistry, water isotopes and aquatic organisms Appendix 2-4: Occurrence of zoobenthos organisms in the sampled Central-Yakutian lakes in July 2005 3. Vegetation studies in extremely continental regions of Yakutia 3.1 Introduction 3.2 Study areas and investigated vegetation types 3.3 Material and methods 3.4 Preliminary results 3.5 Appendix 3-1: Metadata of studied vegetation records

Note: Zugl.: Bremen, Univ., Diss., 2005

Note: Zugl.: Bremen, Univ., Diss., 2006

Note: Zugl.: Greifswald, Univ., Diss., 2005