Abstract
X-ray diffraction analysis of crystals of the intercalative complex between the deoxyribonucleoside phosphate d(CpG) and the mutagen proflavine shows a highly structured arrangement of water molecules linked together by networks of hydrogen bonds to form four edge-linked pentagons per asymmetric unit. These pentagons have a general role in maximizing hydrogen bonding at 3.4-Å intervals. The conformation of the deoxyribose sugar ring at the 3′ end of one strand can depend on its local aqueous environment.
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 51 print issues and online access
$199.00 per year
only $3.90 per issue
Buy this article
- Purchase on Springer Link
- Instant access to full article PDF
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
Texter, J. Prog. Biophys. molec. Biol. 33, 83–97 (1978).
Lewin, S. J. theor. Biol. 17, 181–212 (1967).
Clementi, E. & Corongiu, G. Biopolymers 18, 2431–2450 (1979).
Bloomfield, V. A., Crothers, D. M. & Tinoco, I. in Physical Chemistry of Nucleic Acids (Harper & Row, New York, 1974).
Tunis, M. J. B. & Hearst, J. E. Biopolymers 6, 1345–1353 (1968).
Wolf, B. & Hanlon, S. Biochemistry 14, 1661–1670 (1975).
Falk, M., Hartman, K. A. Jr & Lord, R. C. J. Am. chem. Soc. 85, 387–391 (1963).
Alden, C. J. & Kim, S. H. J. molec. Biol. 132, 411–434 (1979).
Rosenberg, J. M., Seeman, N. C., Day, D. O. & Rich, A. J. molec. Biol. 104, 145–167 (1976).
Seeman, N. C., Rosenberg, J. M., Suddath, F. L., Kim, J. J. P. & Rich, A. J. molec. Biol. 104, 109–144 (1976).
Seeman, N. C., Rosenberg, J. M. & Rich, A. Proc. natn. Acad. Sci. U.S.A. 73, 804–808 (1976).
Goldblum, A., Perahia, D. & Pullman, A. FEBS Lett. 91, 213–215 (1978).
Thiyagarajan, P. & Ponnuswamy, P. K. Biopolymers 18, 2233–2247 (1979).
Viswamitra, M. A. et al. Nature 273, 687–688 (1978).
Wang, A. H.-J. et al. Nature 282, 680–686 (1979).
Shieh, H.-S., Berman, H. M., Dabrow, M. & Neidle, S. Nucleic Acids Res. 8, 85–97 (1980).
Pullman, A. in Structure and Conformation o f Nucleic Acids and Protein-Nucleic Interactions (eds Sundaralingam, M. & Rao, S. T.) 457–484 (University Park Press, Baltimore, 1975).
Schwartenbach, D. J. chem. Phys. 48, 4134–4140 (1968).
Jeffrey, G. A. Acct. Chem. Res. 2, 344–352 (1969).
Berman, H. M. et al. Biopolymers 18, 2405–2429 (1979).
Sobell, H. M. in Nucleic Acid Geometry and Dynamics (ed. Sarma, R. H.) 83–108 (Pergamon, New York, 1980).
Berman, H. M., Neidle, S. & Stodola, R. K. Proc. natn. Acad. Sci. U.S.A. 75, 828–832 (1978).
Saenger, W. Nature 279, 343–344 (1979).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Neidle, S., Berman, H. & Shieh, H. Highly structured water network in crystals of a deoxydinucleoside–drug complex. Nature 288, 129–133 (1980). https://doi.org/10.1038/288129a0
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1038/288129a0
This article is cited by
-
Fluxional Hydrogen Bonds in Small Water Clusters (H2O)n (n = 2–6)
Journal of Cluster Science (2024)
-
Small water clusters stimulate microcystin biosynthesis in cyanobacterial Microcystis aeruginosa
Journal of Applied Phycology (2013)
-
Terahertz vibrational properties of water nanoclusters relevant to biology
Journal of Biological Physics (2012)
-
DEXTER: A system that experiments with choices of training data using expert knowledge in the domain of DNA hydration
Machine Learning (1995)
Comments
By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.