Skip to main content
Log in

Fingerprinting plant genomes with oligonucleotide probes specific for simple repetitive DNA sequences

  • Originals
  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Summary

Oligonucleotides hybridizing to simple repetitive DNA patterns are highly informative as probes for DNA fingerprinting in all investigated animal species, including man. Here we demonstrate the applicability of this technique in higher plants. The oligonucleotide probes (GTG)5 and (GATA)4 were used to investigate the differences in DNA fingerprint patterns of the following angiosperm species: Triticum aestivum, Secale cereale, Hordeum vulgare, Beta vulgaris, Petunia hybrida, Brassica oleracea, and Nicotiana tabacum. Two species, Hordeum vulgare as a monocot and Beta vulgaris as a dicot, were analyzed in more detail. Their genomes differ considerably in both amount and organization of the simple repetitive sequences (GATA)n, (GACA)n, (GTG)n, and (CT)n due to the evolutionary distance of these two species. Furthermore, several lines and cultivars of Beta vulgaris and Hordeum vulgare can clearly be distinguished on the basis of their highly polymorphic patterns of these repetitive sequences.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Dallas JF (1988) Detection of DNA “fingerprints” of cultivated rice by hybridization with a human minisatellite probe. Proc Natl Acad Sci USA 85:6831–6835

    Google Scholar 

  • Epplen JT (1988) On simple repetitive GATA/GACA sequences: a critical reappraisal. J Hered 79:409–417

    Google Scholar 

  • Jarman AP, Wells RA (1989) Hypervariable minisatellites: recombinators or innocent bystanders? Trends in Genet 5: 367–371

    Google Scholar 

  • Jeffreys AJ, Wilson V, Thein SL (1985) Individual-specific “fingerprints” of human DNA. Nature 316:76–79

    Google Scholar 

  • Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol Biol 5:69–76

    Google Scholar 

  • Rogstad SH, Patton JC, Schaal BA (1988) M13 repeat probe detects DNA minisatellite-like sequences in gymnosperms and angiosperms. Proc Natl Acad Sci USA 85:9176–9178

    Google Scholar 

  • Ryshkov AP, Jincharadse AG, Prosniak MI, Ivanov PL, Limborska SA (1988) M13 phage as a universal marker for DNA fingerprinting of animals, plants, microorganisms. FEBS Lett 233:388–392

    Google Scholar 

  • Schaefer R, Zischler H, Birsner U, Becker A, Epplen JT (1988) Optimized oligonucleotide probes for DNA fingerprinting. Electrophoresis 9:369–374

    Google Scholar 

  • Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17:6463–6471

    Google Scholar 

  • Tsao SGS, Brunk CF, Pearlman RE (1983) Hybridizations of nucleic acids directly in agarose gels. Anal Biochem 131:365–372

    Google Scholar 

  • Weising K, Weigand F, Driesel AJ, Kahl G, Zischler H, Epplen JT (1989) Polymorphic simple GATA/GACA repeats in plant genomes. Nucleic Acids Res 17:10128

    Google Scholar 

  • Zischler H, Nanda I, Schaefer R, Schmid M, Epplen JT (1989) Dioxygenated oligonucleotide probes specific for simple repeats in DNA fingerprinting and hybridization in situ. Hum Genet 82:227–233

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by P.M. Tigerstedt

Rights and permissions

Reprints and permissions

About this article

Cite this article

Beyermann, B., Nürnberg, P., Weihe, A. et al. Fingerprinting plant genomes with oligonucleotide probes specific for simple repetitive DNA sequences. Theoret. Appl. Genetics 83, 691–694 (1992). https://doi.org/10.1007/BF00226686

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00226686

Key words

Navigation