Skip to main content
Log in

X-ray Crystallographic Studies on the Noncovalent Syntheses of Supermolecules

  • Published:
Structural Chemistry Aims and scope Submit manuscript

Abstract

An approach to the supramolecular syntheses of discrete multicomponent aggregates of noncovalently bound molecules, i.e., supermolecules, is described. This approach involved the careful analysis of X-ray crystal structures so as to permit a gradual increase in superstructural complexity. Many elaborate supermolecules were synthesized noncovalently from dialkylammonium-containing cations and crown ethers, following the initial observation that the dibenzylammonium ion threads through dibenzo[24]crown-8 to generate a singly stranded, singly encircled [2]pseudorotaxane, principally as a result of \([{\text{N}}^{\text{ + }} - {\text{H}} \cdot \cdot \cdot {\text{O}}]\) and \([{\text{C}} - {\text{H}} \cdot \cdot \cdot {\text{O}}]\) hydrogen bond formation. The scope of the fundamental recognition motif obtained from this initial observation was then broadened, through the use of thread-like ions with multiple dialkylammonium centers and/or larger crown ethers, so that multiply stranded and/or multiply encircled pseudorotaxanes could be prepared. Cations bearing both dialkylammonium and crown ether recognition sites were also used for the nocovalent synthesis of a discrete daisy chain supermacrocycle and the basic recognition motif was combined with other motifs for the production of a wide range of novel superarchitectures. As a greater understanding of the noncovalent interactions governing the self-assembly of the complex superarchitectures was acquired, new protocols for the noncovalent syntheses of doubly docked pseudorotaxanes and interwoven supramolecular bundles, including a supramolecular analogue of the photosynthetic special pair, were developed. The discovery that anions can play a prominent role in the solid-state self-assembly of some of the supermolecules was a valuable spinoff of the research.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

REFERENCES

  1. Mascal, M. Contemp. Org. Synth. 1994, 1, 31-46. (b) Lehn, J.-M. Supramolecular Chemistry; VCH: Weinheim, 1995.

    Google Scholar 

  2. Seebach, D. Angew. Chem., Int. Ed. Engl. 1990, 29, 1320-1367.

    Google Scholar 

  3. Fyfe, M. C. T.; Stoddart, J. F. Acc. Chem. Res. 1997, 30, 393-401.

    Google Scholar 

  4. Lawrence, D. S.; Jiang, T.; Levett, M. Chem. Rev. 1995, 95, 2229-2260. (b) Philp, D.; Stoddart, J. F. Angew. Chem., Int. Ed. Engl. 1996, 35, 1154–1196. (c) Conn, M. M.; Rebek, J., Jr. Chem. Rev. 1997, 97, 1647–1668. (d) Linton, B.; Hamilton, A. D. Chem. Rev. 1997, 97, 1669–1680. (e) Gillard, R. E.; Raymo, F. M.; Stoddart, J. F. Chem. Eur. J. 1997, 3, 1933–1940.

    Google Scholar 

  5. MacGillivray, L.; Atwood, J. L. Nature 1997, 389, 469-472. (b) Hasenkopf, B.; Lehn, J.-M.; Boumedine, N.; Dupont-Gervais, A.; Van Dorsselaer, A.; Kniesel, B.; Fenske, D. J. Am. Chem. Soc. 1997, 119, 10956–10962. (c) Caulder, D. L.; Raymond, K. N. Angew. Chem., Int. Ed. Engl. 1997, 36, 1440–1442. (d) Timmerman, P.; Vreekamp, R. H.; Hulst, R.; Verboom, W.; Reinhoudt, D. N.; Rissanen, K.; Udachin, K. A.; Ripmeester, J. Chem. Eur. J. 1997, 3, 1823–1832. (e) Stang, P. J. Chem. Eur. J. 1998, 4, 19–27. (f) Biradha, K.; Zaworotko, M. J. J. Am. Chem. Soc. 1998, 120, 6431–6432.

    Google Scholar 

  6. Whang, D.; Heo, J.; Kim, C.-A.; Kim, K. Chem. Commun. 1997, 2361-2362. (b) Sijbesma, R. P.; Beijer, F. H.; Brunsveld, L.; Folmer, B. J. B.; Hirschberg, J. H. K. K.; Lange, R. F. M.; Meijer, E. W. Science 1997, 278, 1601–1604. (c) Russell, K. C.; Lehn, J.-M.; Kyritsakas, N.; DeCian, A.; Fisher, J. New J. Chem. 1998, 123–128. (d) Fyfe, M. C. T.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. New J. Chem. 1998, 155–157. (e) Castellano, R. K.; Rebek, J., Jr. J. Am. Chem. Soc. 1998, 120, 3657–3663. (f) Batten, S. R.; Robson, R. Angew. Chem., Int. Ed. 1998, 37, 1460–1494.

  7. Amabilino, D. B.; Stoddart, J. F.; Williams, D. J. Chem. Mater. 1994, 6, 1159-1167. (b) Desiraju, G. R. Chem. Commun. 1997, 1475–1482.

    Google Scholar 

  8. de Silva, A. P., Gunaratne, H. Q.; Gunnlaugsson, T.; Huxley, A. J. M.; McCoy, C. P.; Rademacher, J. T.; Rice, T. E. Chem. Rev. 1997, 97, 1515-1566. (b) Balzani, V.; Gómez-López, M.; Stoddart, J. F. Acc. Chem. Res. 1998, 31, 405–414. (c) Sauvage, J.-P. Acc. Chem. Res. 1998, 31, 611–619.

    Google Scholar 

  9. Lehn, J.-M. Makromol. Chem., Macromol. Symp. 1993, 69, 1-17.

    Google Scholar 

  10. Fyfe, M. C. T.; Stoddart, J. F. Adv. Supramol. Chem. 1999, 5, 1-53.

    Google Scholar 

  11. Ashton, P. R.; Philp, D.; Spencer, N.; Stoddart, J. F. J. Chem. Soc., Chem. Commun. 1991, 1677-1679.

  12. Amabilino, D. B.; Stoddart, J. F. Chem. Rev. 1995, 95, 2725-2828. (b) Gibson, H. W. In Large Ring Molecules; Semlyen, J. A., ed.; Wiley: Chichester, 1996; pp. 191–262. (c) Jäger, R.; Vögtle, F. Angew. Chem., Int. Ed. Engl. 1997, 36, 930–944.

    Google Scholar 

  13. Ashton, P. R.; Campbell, P. J.; Chrystal, E. J. T.; Glink, P. T.; Menzer, S.; Philp, D.; Spencer, N.; Stoddart, J. F.; Tasker, P. A.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1995, 34, 1865-1869. (b) Ashton, P. R.; Chrystal, E. J. T.; Glink, P. T.; Menzer, S.; Schiavo, C.; Stoddart, J. F.; Tasker, P. A.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1995, 34, 1869–1871. (c) Ashton, P. R.; Chrystal, E. J. T.; Glink, P. T.; Menzer, S.; Schiavo, C.; Spencer, N.; Stoddart, J. F.; Tasker, P. A.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1996, 2, 709–728. (d) Glink, P. T.; Schiavo, C.; Stoddart, J. F.; Williams, D. J. Chem. Commun. 1996, 1483–1490.

    Google Scholar 

  14. Dalley, N. K.; Bradshaw, J. S.; Larson, S. B.; Simonsen, S. H. Acta Cryst. 1982, B38, 1859-1862.

    Google Scholar 

  15. Ashton, P. R.; Baxter, I.; Fyfe, M. C. T.; Raymo, F. M.; Spencer, N.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. J. Am. Chem. Soc. 1998, 120, 2297-2307.

    Google Scholar 

  16. Ashton, P. R.; Fyfe, M. C. T.; Hickingbottom, S. K.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. J. Chem. Soc., Perkin Trans. 2 1998, 2117-2128.

    Google Scholar 

  17. Kolchinski, A. G.; Busch, D. H.; Alcock, N. W. J. Chem. Soc., Chem. Commun. 1995, 1289-1291. (b) Ashton, P. R.; Glink, P. T.; Stoddart, J. F.; Tasker, P. A.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1996, 2, 729–736. (c) Ashton, P. R.; Glink, P. T.; Stoddart, J. F.; Menzer, S.; Tasker, P. A.; White, A. J. P.; Williams, D. J. Tetrahedron Lett. 1996, 37, 6217–6220. (d) Martínez-Díaz, M.-V.; Spencer, N.; Stoddart, J. F. Angew. Chem., Int. Ed. Engl. 1997, 36, 1904–1907. (e) Kolchinski, A. G.; Alcock, N. W.; Roesner, R. A.; Busch, D. H. Chem. Commun. 1998, 1437–1438. (f) Ashton, P. R.; Ballardini, R.; Balzani, V.; Baxter, I.; Credi, A.; Fyfe, M. C. T.; Gandolfi, M. T.; Gómez-López, M.; Martínex-Díaz, M.-V.; Piersanti, A.; Spencer, N.; Stoddart, J. F.; Venturi, M.; White, A. J. P.; Williams, D. J. J. Am. Chem. Soc. 1998, 120, 11932–11942.

  18. Ashton, P. R.; Baxter, I.; Cantrill, S. J.; Fyfe, M. C. T.; Glink, P. T.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Angew. Chem., Int. Ed. 1998, 37, 1294-1297.

    Google Scholar 

  19. Sessler, J. L.; Andrievsky, A.; Gale, P. A.; Lynch, V. Angew. Chem., Int. Ed. 1996, 35, 2782-2785. (b) Zanotti-Gerosa, A.; Solari, E.; Giannini, L.; Chiesa-Villa, A.; Rizzoli, C. Chem. Commun. 1996, 119–120. (c) Dimitrius, M.; Terzius, A.; Coleman, A. W.; de Rango, C. Carbohydr. Res. 1996, 282, 125–136. (d) Asakawa, M.; Ashton, P. R.; Brown, C. L.; Fyfe, M. C. T.; Menzer, S.; Pasini, D.; Scheuer, C.; Spencer, N.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1997, 3, 1136–1150.

    Google Scholar 

  20. Ashton, P. R.; Ballardini, R.; Balzani, V.; Boyd, S. E.; Credi, A.; Gandolfi, M. T.; Gómez-López, M.; Iqbal, S.; Philp, D.; Preece, J. A.; Prodi, L.; Ricketts, H. G.; Stoddart, J. F.; Tolley, M. S.; Venturi, M.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1997, 3, 152-170.

    Google Scholar 

  21. Amabilino, D. B.; Parsons, I. W.; Stoddart, J. F. Trends Polym. Sci. 1994, 2, 146-152.

    Google Scholar 

  22. Gong, C. G.; Gibson, H. W. Curr. Opin. Solid State Mater. Sci. 1997, 2 647-652. (b) Gibson, H. W.; Gong, C. G.; Liu, S.; Nagvekar, D. Macromol. Symp. 1998, 128, 89–98.

    Google Scholar 

  23. Ashton, P. R.; Fyfe, M. C. T.; Glink, P. T.; Menzer, S.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. J. Am. Chem. Soc. 1997, 119, 12514-12524.

    Google Scholar 

  24. Ashton, P. R.; Ballardini, R.; Balzani, V.; Gómez-López, M.; Lawrence, S. E.; Martínez-Díaz, M.-V.; Montalti, M.; Piersanti, A.; Prodi, L.; Stoddart, J. F.; Williams, D. J. J. Am. Chem. Soc. 1997, 119, 10641-10651.

    Google Scholar 

  25. Ashton, P. R.; Fyfe, M. C. T.; Schiavo, C.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Tetrahedron Lett. 1998, 39, 5455-5458.

    Google Scholar 

  26. Raymo, F. M.; Stoddart, J. F. Pure Appl. Chem. 1997, 69, 1987-1997.

    Google Scholar 

  27. Allwood, B. L.; Spencer, N.; Shahriari-Zavareh, H.; Stoddart, J. F.; Williams, D. J. J. Chem. Soc., Chem. Commun. 1987, 1064-1066.

  28. Ashton, P. R.; Glink, P. T.; Martínez-Díaz, M.-V.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1996, 35, 1930-1933. (b) Ashton, P. R.; Ballardini, R.; Balzani, V.; Fyfe, M. C. T.; Gandolfi, M. T.; Martínez-Díaz, M.-V.; Morosini, M.; Schiavo, C.; Shibata, K.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1998, 4, 2332–2341.

    Google Scholar 

  29. Fyfe, M. C. T.; Stoddart, J. F. Coord. Chem. Rev. 1999, 183, 139-155.

    Google Scholar 

  30. Beer, P. D. Chem. Commun. 1996, 689-696. (b) Atwood, J. L.; Holman, K. T.; Steed, J. W. Chem. Commun. 1996, 1401–1407. (c) Schmidtchen, F. P.; Berger, M. Chem. Rev. 1997, 97, 1609–1646. (d) Antonisse, M. G. M.; Reinhoudt, D. N. Chem. Commun. 1998, 443–448.

  31. For leading references on examples of anion-assisted self-assembly, see: (a) Vilar, R.; Mingos, D. M. P.; White, A. J. P.; Williams, D. J. Angew. Chem., Int. Ed. 1998, 37, 1258-1261. (b) Fender, N. S.; Kahwa, I. A.; White, A. J. P.; Williams, D. J. J. Chem. Soc., Dalton Trans. 1998, 1729–1730.

    Google Scholar 

  32. Fyfe, M. C. T.; Glink, P. T.; Menzer, S.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1997, 36, 2068-2070.

    Google Scholar 

  33. Cram, D. J. Angew. Chem., Int. Ed. Engl. 1986, 25, 1039-1057. (b) Cram, D. J. Angew. Chem., Int. Ed. Engl. 1988, 27, 1009–1020.

    Google Scholar 

  34. Ashton, P. R.; Fyfe, M. C. T.; Martínez-Díaz, M.-V.; Menzer, S.; Schiavo, C.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1998, 4, 1523-1534.

    Google Scholar 

  35. Goldberg, I. In Inclusion Compounds, vol. 2; Atwood, J. L., Davies, J. E. D., MacNicol, D. D., eds.; Academic: London, 1984; pp. 261-335.

    Google Scholar 

  36. Ashton, P. R.; Collins, A. N.; Fyfe, M. C. T.; Menzer, S.; Stoddart, J. F.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1997, 36, 735-739. (b) Ashton, P. R.; Fyfe, M. C. T.; Hickingbottom, S. K.; Menzer, S.; Stoddart, J. F.; White, A. J. P.; Williams, D. J. Chem. Eur. J. 1998, 4, 577–589.

    Google Scholar 

  37. Kolotuchin, S. V.; Fenlon, E. E.; Wilson, S. R.; Loweth, C. J.; Zimmerman, S. C. Angew. Chem., Int. Ed. Engl. 1995, 34, 2654-2657 and references cited therein.

    Google Scholar 

  38. Alcala, R.; Martinez-Carrera, S. Acta Cryst. 1972, B28, 1671-1677.

    Google Scholar 

  39. Beissel, T.; Powers, R. E.; Raymond, K. N. Angew. Chem., Int. Ed. Engl. 1996, 35, 1084-1086.

    Google Scholar 

  40. Ashton, P. R.; Colins, A. N.; Fyfe, M. C. T.; Glink, P. T.; Menzer, S.; Stoddart, J. F.; Williams, D. J. Angew. Chem., Int. Ed. Engl. 1997, 36, 59-62.

    Google Scholar 

  41. Feiters, M. C.; Fyfe, M. C. T.; Martínez-Díaz, M.-V.; Menzer, S.; Nolte, R. J. M.; Stoddart, J. F.; van Kan, P. J. M.; Williams, D. J. J. Am. Chem. Soc. 1997, 119, 8119-8120.

    Google Scholar 

  42. Deisenhofer, J.; Michel, H. Science 1989, 245, 1463-1473.

    Google Scholar 

  43. For some examples of recent synthetic analogues, see: (a) Kobuke, Y.; Miyaji, H. J. Am. Chem. Soc. 1994, 116, 4111-4112. (b) Senge, M. O.; Vicente, M. G. H.; Gerzevske, K. R.; Forsyth, T. P.; Smith, K. M. Inorg. Chem. 1994, 33, 5625–5638. (c) Girolami, G. S.; Hein, C. L.; Suslick, K. S. Angew. Chem., Int. Ed. Engl. 1996, 35, 1223–1225. (d) Stibrany, R. T.; Vasudevan, J.; Knapp, S.; Potenza, J. A.; Emge, T.; Schugar, H. J. J. Am. Chem. Soc. 1996, 118, 3980–3981.

    Google Scholar 

  44. For an explanation of why stacked porphyrin pairs adopt this sheared, or slipped cofacial, arrangement, see: Hunter, C. A. In From Simplicity to Complexity in Chemistry—and Beyond; Müller, A., Dress, A., Vögtle, F., eds.; Vieweg: Braunschweig/Wiesbaden, 1996; Part 1, pp. 113-126.

    Google Scholar 

  45. Cram, D. J.; Cram, J. M. Container Molecules and Their Guests; The Royal Society of Chemistry: Cambridge, 1994; pp. 85-106.

    Google Scholar 

  46. Zeng, F.; Zimmerman, S. C. Chem. Rev. 1997, 97, 1681-1712.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Fyfe, M.C.T., Stoddart, J.F. & Williams, D.J. X-ray Crystallographic Studies on the Noncovalent Syntheses of Supermolecules. Structural Chemistry 10, 243–259 (1999). https://doi.org/10.1023/A:1021844715425

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1021844715425

Navigation