The 2023 MDPI Annual Report has
been released!
 
11 pages, 1703 KiB  
Article
Influence of Lipopolysaccharide-Interacting Peptides Fusion with Endolysin LysECD7 and Fatty Acid Derivatization on the Efficacy against Acinetobacter baumannii Infection In Vitro and In Vivo
by Xiaowan Li, Wenwen Shangguan, Xiaoqian Yang, Xiaoyue Hu, Yanan Li, Wenjie Zhao, Meiqing Feng and Jun Feng
Viruses 2024, 16(5), 760; https://doi.org/10.3390/v16050760 (registering DOI) - 11 May 2024
Abstract
Acinetobacter baumannii has developed multiple drug resistances, posing a significant threat to antibiotic efficacy. LysECD7, an endolysin derived from phages, could be a promising therapeutic agent against multi-drug resistance A. baumannii. In this study, in order to further enhance the antibacterial efficiency [...] Read more.
Acinetobacter baumannii has developed multiple drug resistances, posing a significant threat to antibiotic efficacy. LysECD7, an endolysin derived from phages, could be a promising therapeutic agent against multi-drug resistance A. baumannii. In this study, in order to further enhance the antibacterial efficiency of the engineered LysECD7, a few lipopolysaccharide-interacting peptides (Li5, MSI594 and Li5-MSI) were genetically fused with LysECD7. Based on in vitro antibacterial activity, the fusion protein Lys-Li5-MSI was selected for further modifications aimed at extending its half-life. A cysteine residue was introduced into Lys-Li5-MSI through mutation (Lys-Li5-MSIV12C), followed by conjugation with a C16 fatty acid chain via a protonation substitution reaction(V12C-C16). The pharmacokinetic profile of V12C-C16 exhibited a more favorable characteristic in comparison to Lys-Li5-MSI, thereby resulting in enhanced therapeutic efficacy against lethal A. baumannii infection in mice. The study provides valuable insights for the development of novel endolysin therapeutics and proposes an alternative therapeutic strategy for combating A. baumannii infections. Full article
(This article belongs to the Special Issue Bacteriophage Lytic Proteins)
Show Figures

Figure 1

15 pages, 6326 KiB  
Article
The Scratch Resistance of a Plasma-Assisted DUPLEX-Treated 17-4 Precipitation-Hardened Stainless Steel Additively Manufactured by Laser Powder Bed Fusion
by Arturo Gómez-Ortega, Julián Andrés Pinilla-Bedoya, Carolina Ortega-Portilla, Christian Félix-Martínez, Guillermo César Mondragón-Rodríguez, Diego Germán Espinosa-Arbeláez, James Pérez-Barrera, Juan Manuel González-Carmona and Edgar Adrián Franco Urquiza
Coatings 2024, 14(5), 605; https://doi.org/10.3390/coatings14050605 (registering DOI) - 11 May 2024
Abstract
Additive manufacturing (AM) or 3D printing of metals is gaining popularity due to its flexibility when fabricating parts with highly complex designs, as well as when simplifying manufacturing steps and optimizing process times. In this investigation, 17-4 PH stainless steel was additively manufactured [...] Read more.
Additive manufacturing (AM) or 3D printing of metals is gaining popularity due to its flexibility when fabricating parts with highly complex designs, as well as when simplifying manufacturing steps and optimizing process times. In this investigation, 17-4 PH stainless steel was additively manufactured using Laser Powder Bed Fusion (L-PBF), followed by functionalization through a DUPLEX treatment. This treatment involved a plasma-assisted nitriding process, followed by the deposition of an arc-PVD c-Al0.7Cr0.3N hard coating. The microstructural modifications resulting from plasma nitriding (such as the formation of Fe2,3N and Fe4N and the αN or expanded martensite phases) and the surface improvements with the c-Al0.7Cr0.3N coating on the 3D-printed 17-4 PH steel are evaluated in comparison to conventionally manufactured 17-4 PH steel. These microstructural characteristics are correlated with the mechanical response of the treated surfaces. As a result of the plasma nitriding process, the hardness of the 3D-printed 17-4 PH SS increased by approximately 260%. The wear, measured through dynamic and static scratch testing, was reduced by approximately 31%. This improvement was attributed to the modification of adhesive failure mechanisms, leading to a reduction in wear volume, improved coating adhesion, and enhanced scratch resistance. Full article
(This article belongs to the Topic Additive Manufacturing of Architected Metallic Materials)
Show Figures

Figure 1

19 pages, 3011 KiB  
Article
An Evaluation of the Anxiolytic Potential of Amentoflavone in Adult Zebrafish Undergoing Alcohol Withdrawal: In Vivo and In Silico Studies
by Lucas Soares Frota, Wildson Max Barbosa da Silva, Daniela Ribeiro Alves, Sacha Aubrey Alves Rodrigues Santos, Gabriela Alves do Nascimento, Francisco Ernani Alves Magalhães, Adriana Rolim Campos and Selene Maia de Morais
Receptors 2024, 3(2), 201-219; https://doi.org/10.3390/receptors3020011 (registering DOI) - 10 May 2024
Abstract
The constant use of alcoholic beverages can deregulate serotonin levels, affecting neurotransmitters and triggering symptoms of anxiety. In this context, the objective of this work was to evaluate the anxiolytic potential and possible action mechanisms of the natural compound amentoflavone against the deleterious [...] Read more.
The constant use of alcoholic beverages can deregulate serotonin levels, affecting neurotransmitters and triggering symptoms of anxiety. In this context, the objective of this work was to evaluate the anxiolytic potential and possible action mechanisms of the natural compound amentoflavone against the deleterious effects caused by alcohol withdrawal on the behavior of adult zebrafish (aZF). The experiments showed that amentoflavone did not change locomotion and did not cause toxicity in aZF during up to 96 h of analysis, with a median lethal concentration (LC50) greater than 1.0 mg/mL. The reversal of anxiety by pretreatment with granisetron suggested that the anxiolytic effect of amentoflavone is dependent on serotonergic 5-HT3A/3B receptors. Furthermore, amentoflavone reversed anxiety due to flumazenil pretreatment, suggesting a dependence on the GABAA receptor. The three concentrations of amentoflavone tested were effective in treating anxiety resulting from alcohol withdrawal. In silico analysis validated the in vivo results, supporting the idea that the interaction of amentoflavone with the protein occurs in a more stable manner than reference compounds. Amid growing interest in natural alternatives to treat anxiety disorders, amentoflavone is a potential candidate for a new anxiolytic compound that acts specifically on the 5HT3A/3B and GABAergic serotonergic pathways. Full article
Show Figures

Figure 1

15 pages, 338 KiB  
Article
An Autoethnography on Intergenerational Relationships and Transnational Care for Older Parents
by Weiguo Zhang
Genealogy 2024, 8(2), 56; https://doi.org/10.3390/genealogy8020056 - 10 May 2024
Abstract
I employ autoethnography to undertake a broader scholarly inquiry on intergenerational relationships and transnational care shaped by global migration and aging. Specifically, I reflect on the dynamics of my relationship with my mother, beginning with my departure from my home and spanning a [...] Read more.
I employ autoethnography to undertake a broader scholarly inquiry on intergenerational relationships and transnational care shaped by global migration and aging. Specifically, I reflect on the dynamics of my relationship with my mother, beginning with my departure from my home and spanning a period of 40 years, 8 in China and 34 outside China. In doing so, I contemplate theoretical models of intergenerational solidarity, ambivalence, and role ambiguity. I also challenge cultural assumptions of filial piety. The geographical distance, passage of time, and acculturation process have profoundly influenced my perception of filial piety, which differs markedly from my mother’s. However, this divergence in consensual solidarity—marked by variations in attitudes, beliefs, and values—does not translate into weakened affectual solidarity, characterized by positive sentiments and emotions. Furthermore, aided by advancements in transportation and social media technology, I have been able to extend crucial emotional and some “instrumental” care to my mother, along with financial support if needed, despite limited hands-on care. Nevertheless, I must negotiate my care for my mother and navigate a delicate balance in coordinating my care efforts with those of my non-migrant siblings. Full article
(This article belongs to the Special Issue Challenges in Multicultural Marriages and Families)
11 pages, 1190 KiB  
Review
Using the Blockchain to Reduce Carbon Emissions in the Visitor Economy
by Eduard Romulus Goean, Xavier Font, Yu Xiong, Susanne Becken, Jonathan L. Chenoweth, Lorenzo Fioramonti, James Higham, Amit Kumar Jaiswal, Jhuma Sadhukhan, Ya-Yen Sun, Horst Treiblmaier, Senmao Xia and Xun Zhou
Sustainability 2024, 16(10), 4000; https://doi.org/10.3390/su16104000 (registering DOI) - 10 May 2024
Abstract
The visitor economy is responsible for a substantial percentage of the global carbon footprint. The mechanisms used to decarbonize it are insufficient, and the industry is relying on carbon trading with substandard credits that allow businesses to outsource the responsibility to decarbonize. We [...] Read more.
The visitor economy is responsible for a substantial percentage of the global carbon footprint. The mechanisms used to decarbonize it are insufficient, and the industry is relying on carbon trading with substandard credits that allow businesses to outsource the responsibility to decarbonize. We aim to transform carbon markets, help finance climate investments, and support decarbonization strategies. We identify and define the problem, outline the components and their interactions, and develop a conceptual model to transform carbon markets. The new, blockchain-based Carbon Tokenomics Model rolls out a decentralized database to store, trade, and manage carbon credits, with the goal of enabling sustainable climate finance investment. We outline the criteria needed for an industry-wide carbon calculator. We explain the process needed to increase rigor in climate investments in the visitor economy and introduce a delegated Proof of Commitment consensus mechanism. Our inclusive and transparent model illustrates how to reduce transaction costs and how to build consumer and industry trust, generating much-needed investments for decarbonization. Full article
Show Figures

Figure 1

20 pages, 10968 KiB  
Article
Classification of Pollution Sources and Their Contributions to Surface Water Quality Using APCS-MLR and PMF Model in a Drinking Water Source Area in Southeastern China
by Ai Wang, Jiangyu Wang, Benjie Luan, Siru Wang, Dawen Yang and Zipeng Wei
Water 2024, 16(10), 1356; https://doi.org/10.3390/w16101356 - 10 May 2024
Abstract
Identifying the potential pollution sources of surface water pollutants is essential for the management and protection of regional water environments in drinking water source areas. In this study, absolute principal component score-multiple linear regression (APCS-MLR) and positive matrix factorization (PMF) models were applied [...] Read more.
Identifying the potential pollution sources of surface water pollutants is essential for the management and protection of regional water environments in drinking water source areas. In this study, absolute principal component score-multiple linear regression (APCS-MLR) and positive matrix factorization (PMF) models were applied to assess water quality and identify the potential pollution sources affecting the surface water quality of Xin’an River Basin. For this purpose, a 10-year (2011–2020) dataset of eight water quality indicators (including pH, EC, DO, COD, NH3-N, TN, TP, and FC) covering eight monitoring stations and 7248 monthly observations was used. The results indicated that Pukou section had the worst water quality among the eight monitoring stations, and TN was the most serious water quality index. Both the APCS-MLR and PMF models identified agricultural nonpoint source pollution, urban nonpoint source pollution and rural domestic pollution, and meteorological factors. The sum of these three sources was very close, accounting for 60% and 58%, respectively. The APCS-MLR results demonstrated that for EC, COD, and NH3-N, the major pollution sources were urban nonpoint sources and rural domestic pollution. The major contamination source of TN was agricultural nonpoint source pollution (30.4%). Meanwhile, the major pollution sources of pH, DO, TP, and FC were unidentified factors. The PMF model identified five potential sources, and pH and DO were affected by meteorological factors. NH3-N and TP were influenced mainly by agricultural nonpoint source pollution. Atmospheric deposition was the major pollution source (87.9%) of TN. FC was mostly derived from livestock and poultry breeding (88.3%). EC and COD were mostly affected by urban nonpoint sources and rural domestic pollution. Therefore, receptor models can help managers identify the major sources of pollution in watersheds, but the major factors affecting different pollutants need to be supplemented by other methods. Full article
(This article belongs to the Section Urban Water Management)
Show Figures

Figure 1

22 pages, 2642 KiB  
Article
Revisiting the Numerical Evaluation and Visualization of the Gravity Fields of Asteroid 4769 Castalia Using Polyhedron and Harmonic Expansions Models
by Weiduo Hu, Tao Fu and Chang Liu
Appl. Sci. 2024, 14(10), 4058; https://doi.org/10.3390/app14104058 (registering DOI) - 10 May 2024
Abstract
For the convenience of comparison with previous literature, the gravity calculations are revisited for the Asteroid 4769 Castalia, but with extensions on its surface and on intersecting planes and spheres around it, using the polyhedron and harmonic expansion methods with different order and [...] Read more.
For the convenience of comparison with previous literature, the gravity calculations are revisited for the Asteroid 4769 Castalia, but with extensions on its surface and on intersecting planes and spheres around it, using the polyhedron and harmonic expansion methods with different order and degree for different cases, especially including the gravitational accelerations inside the asteroid, which did not appear at all before. In these evaluations, a few different facts of the these methods and results are revealed, such as the fact that gravity diverges when the position radius is less than the mean radius from harmonic-expansion method, and the maximum gravity is not at the deep valley and mountain top. For a surface that intersects the asteroid, the maximum gravity on it is at the intersection lines between the asteroid surface and the spheres or planes. This means that on the sphere and the plane, the gravities inside and outside the asteroid are smaller than the gravity on the intersection, i.e., on the surface. Some analyses of these conclusions are given with many examples with different radii of the sphere and with different order and degree harmonic expansion models for the above asteroid surface and surrounding spheres. It is interesting to note that very few researchers know that the polyhedral method can also be used to calculate the gravity inside an asteroid with just some modifications of the code. Some special gravity figures on surface and planes inside the asteroid Castalia are computed and made for the first time. The calculations also include tangential gravity, potential, and gravitational slope on surface. Specifically, we find that the overall mean gravitational slope could be one kind of indicator of the density of an asteroid. The minimum overall mean slope happens when the asteroid density is about 2.9 g/cm3, which is much larger than a usually assumed value between 1.7 and 2.5 for asteroid Castalia when its period is 4.07 h, since rotation period should be a more accurate parameter than its estimated density. These conclusions about this typical prolate-like asteroid could be a benchmark for analyzing other similar asteroids. Full article
Show Figures

Figure 1

12 pages, 871 KiB  
Article
Effects of Artificial Sugar Supplementation on the Composition and Nutritional Potency of Honey from Apis cerana
by Yueyang Hu, Jianhui Liu, Qizhong Pan, Xinxin Shi and Xiaobo Wu
Insects 2024, 15(5), 344; https://doi.org/10.3390/insects15050344 (registering DOI) - 10 May 2024
Abstract
In the global apiculture industry, reward feeding and supplementary feeding are essential for maintaining bee colonies. Beekeepers provide artificial supplements to their colonies, typically in the form of either a honey–water solution or sugar syrup. Owing to cost considerations associated with beekeeping, most [...] Read more.
In the global apiculture industry, reward feeding and supplementary feeding are essential for maintaining bee colonies. Beekeepers provide artificial supplements to their colonies, typically in the form of either a honey–water solution or sugar syrup. Owing to cost considerations associated with beekeeping, most beekeepers opt for sugar syrup. However, the effects of different types of artificial sugar supplements on bee colonies and their subsequent impact on honey composition remain unclear. To address this gap, this study compared the chemical composition, antioxidant capacity, and nutritional potency of three types of honey: honey derived from colonies fed sugar syrup (sugar-based product, SP) or a honey–water solution (honey-sourced honey, HH) and naturally sourced honey (flower-sourced honey, FH), which served as the control. The results revealed that FH outperformed HH and SP in terms of total acidity, sugar content, total protein content, and antioxidant capacity, and HH outperformed SP. Regarding nutritional efficacy, including the lifespan and learning and memory capabilities of worker bees, FH exhibited the best outcomes, with no significant differences observed between HH and SP. This study underscores the importance of sugar source selection in influencing honey quality and emphasizes the potential consequences of substituting honey with sugar syrup in traditional apiculture practices. Full article
(This article belongs to the Section Insect Societies and Sociality)
43 pages, 9453 KiB  
Article
Using Dynamo for Automatic Reconstruction of BIM Elements from Point Clouds
by Gustavo Rocha and Luís Mateus
Appl. Sci. 2024, 14(10), 4078; https://doi.org/10.3390/app14104078 (registering DOI) - 10 May 2024
Abstract
The integration of 3D laser scanning and digital photogrammetry in the architecture, engineering, and construction (AEC) industry has facilitated high-quality architectural surveys. However, the processes remains constrained by significant costs, extensive manual labor, and accuracy issues associated with manual data processing. This article [...] Read more.
The integration of 3D laser scanning and digital photogrammetry in the architecture, engineering, and construction (AEC) industry has facilitated high-quality architectural surveys. However, the processes remains constrained by significant costs, extensive manual labor, and accuracy issues associated with manual data processing. This article addresses these operational challenges by introducing automated Building Information Modeling (BIM) techniques that minimize manual input through the use of Dynamo for Autodesk Revit. We developed algorithms that efficiently convert point cloud data into accurate BIM models, enhancing productivity and reducing the potential for errors. The application of these algorithms is analyzed in a case study of the Old Lifeguard Station of Fuseta, showcasing notable reductions in modeling time and improvements in accuracy. The findings suggest that automated scan-to-BIM methods could provide a viable solution for enhancing BIM workflows across the industry, with the potential for wider adoption given their impact on efficiency and model quality. Full article
(This article belongs to the Special Issue Building Information Modeling (BIM): Advance and Future Trends)
16 pages, 3598 KiB  
Article
Experimental Study on Mechanical Properties of Reinforced Soil and Frame Beam Anchor Combination System
by Jiangfei He and Leihua Yao
Buildings 2024, 14(5), 1372; https://doi.org/10.3390/buildings14051372 (registering DOI) - 10 May 2024
Abstract
To address issues with excessive displacement, deformation, and insufficient load bearing capacity in high-fill-reinforced soil-retaining walls, a novel reinforced soil–frame anchor combination system was developed. Despite the limited existing research on its mechanical properties and synergy, a physical model test was conducted to [...] Read more.
To address issues with excessive displacement, deformation, and insufficient load bearing capacity in high-fill-reinforced soil-retaining walls, a novel reinforced soil–frame anchor combination system was developed. Despite the limited existing research on its mechanical properties and synergy, a physical model test was conducted to investigate the system’s behavior. The test focused on the horizontal displacement of the frame beam wall, grid strain, wall back earth pressure, and anchor strain. Results indicated that anchor prestress effectively controlled horizontal deformation, limiting it to 65% of the original displacement value. Additionally, as the top load increased, strain in the bottom bars showed minor changes, while strain in the middle and upper bars exhibited significant sensitivity to load variations. The application of anchor prestress reduced strain in each reinforcement layer, enhancing the geogrid’s load bearing capacity. Furthermore, anchor prestress altered the distribution of earth pressure within the system, establishing a synergistic relationship between reinforced soil and frame beam anchors. This stress transfer mechanism improved overall system performance, as demonstrated in the test. Overall, the study confirmed the benefits and superior performance of the combined system. Full article
(This article belongs to the Special Issue Advances and Applications in Geotechnical and Structural Engineering)
13 pages, 1303 KiB  
Article
Effect of Antioxidants in Medicinal Products on Intestinal Drug Transporters
by Chetan P. Kulkarni, Jia Yang, Megan L. Koleske, Giovanni Lara, Khondoker Alam, Andre Raw, Bhagwant Rege, Liang Zhao, Dongmei Lu, Lei Zhang, Lawrence X. Yu, Robert A. Lionberger, Kathleen M. Giacomini, Deanna L. Kroetz and Sook Wah Yee
Pharmaceutics 2024, 16(5), 647; https://doi.org/10.3390/pharmaceutics16050647 (registering DOI) - 10 May 2024
Abstract
The presence of mutagenic and carcinogenic N-nitrosamine impurities in medicinal products poses a safety risk. While incorporating antioxidants in formulations is a potential mitigation strategy, concerns arise regarding their interference with drug absorption by inhibiting intestinal drug transporters. Our study screened thirty antioxidants [...] Read more.
The presence of mutagenic and carcinogenic N-nitrosamine impurities in medicinal products poses a safety risk. While incorporating antioxidants in formulations is a potential mitigation strategy, concerns arise regarding their interference with drug absorption by inhibiting intestinal drug transporters. Our study screened thirty antioxidants for inhibitory effects on key intestinal transporters—OATP2B1, P-gp, and BCRP in HEK-293 cells (OATP2B1) or membrane vesicles (P-gp, BCRP) using 3H-estrone sulfate, 3H-N-methyl quinidine, and 3H-CCK8 as substrates, respectively. The screen identified that butylated hydroxyanisole (BHA) and carnosic acid inhibited all three transporters (OATP2B1, P-gp, and BCRP), while ascorbyl palmitate (AP) inhibited OATP2B1 by more than 50%. BHA had IC50 values of 71 ± 20 µM, 206 ± 14 µM, and 182 ± 49 µM for OATP2B1, BCRP, and P-gp, respectively. AP exhibited IC50 values of 23 ± 10 µM for OATP2B1. The potency of AP and BHA was tested with valsartan, an OATP2B1 substrate, and revealed IC50 values of 26 ± 17 µM and 19 ± 11 µM, respectively, in HEK-293-OATP2B1 cells. Comparing IC50 values of AP and BHA with estimated intestinal concentrations suggests an unlikely inhibition of intestinal transporters at clinical concentrations of drugs formulated with antioxidants. Full article
(This article belongs to the Special Issue New Insights into Transporters in Drug Development)
Show Figures

Graphical abstract

12 pages, 848 KiB  
Article
Associations of Dietary Diversity Trajectories with Frailty among Chinese Older Adults: A Latent Class Trajectory Analysis Based on a CLHLS Cohort
by Chenyu Zhao, Yuping Wang, Xiaocan Jia, Jingwen Fan, Nana Wang, Yongli Yang and Xuezhong Shi
Nutrients 2024, 16(10), 1445; https://doi.org/10.3390/nu16101445 (registering DOI) - 10 May 2024
Abstract
Background: High dietary diversity has been found to be associated with frailty. However, the trajectory of dietary diversity intake in relation to frailty is unclear. Methods: Using the latent class trajectory modeling approach, we identified distinctive dietary variety trajectory groups among 2017 participants [...] Read more.
Background: High dietary diversity has been found to be associated with frailty. However, the trajectory of dietary diversity intake in relation to frailty is unclear. Methods: Using the latent class trajectory modeling approach, we identified distinctive dietary variety trajectory groups among 2017 participants based on the Chinese Longitudinal Healthy Longevity Survey acquired at four time points within a 10-year period. Frailty status was assessed using a frailty index comprising 37 health deficits. Dietary diversity was quantified using the dietary variety score (DVS), based on food category consumption frequency. Logistic regression analyses were employed to explore the association between DVS change trajectories and frailty. Results: This study identified two distinct DVS trajectories: “Moderate-Slow decline-Slow growth”, encompassing 810 (40.16%) individuals, and “Moderate-Slow growth-Accelerated decline”, including 1207 (59.84%) individuals. After adjusting for covariates, the odds ratio for DVS in the “Moderate-Slow decline-Slow growth” group was 1.326 (95% confidence interval: 1.075–1.636) compared to the “Moderate-Slow growth-Accelerated decline” group. The “Moderate-Slow decline-Slow growth” trajectory continued to decrease and was maintained at a low level in the early stages of aging. Conclusion: Sustaining a high dietary diversity trajectory over time, particularly in the early stages of aging, could potentially decrease the risk of frailty among older Chinese adults. Full article
48 pages, 12475 KiB  
Review
The Histone Deacetylase Family: Structural Features and Application of Combined Computational Methods
by Antonio Curcio, Roberta Rocca, Stefano Alcaro and Anna Artese
Pharmaceuticals 2024, 17(5), 620; https://doi.org/10.3390/ph17050620 (registering DOI) - 10 May 2024
Abstract
Histone deacetylases (HDACs) are crucial in gene transcription, removing acetyl groups from histones. They also influence the deacetylation of non-histone proteins, contributing to the regulation of various biological processes. Thus, HDACs play pivotal roles in various diseases, including cancer, neurodegenerative disorders, and inflammatory [...] Read more.
Histone deacetylases (HDACs) are crucial in gene transcription, removing acetyl groups from histones. They also influence the deacetylation of non-histone proteins, contributing to the regulation of various biological processes. Thus, HDACs play pivotal roles in various diseases, including cancer, neurodegenerative disorders, and inflammatory conditions, highlighting their potential as therapeutic targets. This paper reviews the structure and function of the four classes of human HDACs. While four HDAC inhibitors are currently available for treating hematological malignancies, numerous others are undergoing clinical trials. However, their non-selective toxicity necessitates ongoing research into safer and more efficient class-selective or isoform-selective inhibitors. Computational methods have aided the discovery of HDAC inhibitors with the desired potency and/or selectivity. These methods include ligand-based approaches, such as scaffold hopping, pharmacophore modeling, three-dimensional quantitative structure–activity relationships, and structure-based virtual screening (molecular docking). Moreover, recent developments in the field of molecular dynamics simulations, combined with Poisson–Boltzmann/molecular mechanics generalized Born surface area techniques, have improved the prediction of ligand binding affinity. In this review, we delve into the ways in which these methods have contributed to designing and identifying HDAC inhibitors. Full article
Show Figures

Figure 1

8 pages, 5240 KiB  
Editorial
Special Issue “Bioinformatics of Unusual DNA and RNA Structures”
by Martin Bartas, Václav Brázda and Petr Pečinka
Int. J. Mol. Sci. 2024, 25(10), 5226; https://doi.org/10.3390/ijms25105226 (registering DOI) - 10 May 2024
Abstract
Nucleic acids are not only static carriers of genetic information but also play vital roles in controlling cellular lifecycles through their fascinating structural diversity [...] Full article
(This article belongs to the Special Issue Bioinformatics of Unusual DNA and RNA Structures)
10 pages, 254 KiB  
Article
Comparison of Cost Analysis in Patients with Tetrahydrobiopterin-Responsive and Non-Responsive Phenylketonuria in Turkey
by Merve Karaca Sahin, Ayse Cigdem Aktuglu Zeybek, Tanyel Zubarioglu, Mehmet Serif Cansever and Ertugrul Kıykım
Nutrients 2024, 16(10), 1444; https://doi.org/10.3390/nu16101444 (registering DOI) - 10 May 2024
Abstract
Phenylketonuria is an inherited metabolic disorder that leads to neurobehavioral dysfunction. The main treatment is a low-phenylalanine diet and/or the cofactor tetrahydrobiopterin. Regular outpatient follow-up care and measurement of the phenylalanine levels in the blood are required. We aimed to analyze the economic [...] Read more.
Phenylketonuria is an inherited metabolic disorder that leads to neurobehavioral dysfunction. The main treatment is a low-phenylalanine diet and/or the cofactor tetrahydrobiopterin. Regular outpatient follow-up care and measurement of the phenylalanine levels in the blood are required. We aimed to analyze the economic burden of phenylketonuria on families and the state. The patients with phenylketonuria were divided into three groups according to their treatment: a low-phenylalanine diet group (n = 50), a tetrahydrobiopterin group (n = 44), and a group taking tetrahydrobiopterin together with the diet (n = 25). A comparative cost analysis was carried out. The annual economic burden to the state was calculated to average EUR 18,801 ± 15,345 and was lowest in the diet group, then in the tetrahydrobiopterin group, and highest in the tetrahydrobiopterin + diet group (p < 0.001). Out-of-pocket costs amounted to EUR 1531 ± 1173 per year, and indirect losses averaged EUR 2125 ± 1930 per year for all families. The economic loss was significantly lower in the families taking tetrahydrobiopterin than in the other groups (p = 0.001). The combined use of medical nutrition and BH4 treatments has been shown to increase the economic burden on the state. Reimbursing low-protein products and increasing the number of patients eligible for financial allowances may reduce the economic burden on families. Full article
(This article belongs to the Section Nutrition and Metabolism)
Show Figures

Graphical abstract

18 pages, 886 KiB  
Review
Implementation of Artificial Intelligence in Personalized Prognostic Assessment of Lung Cancer: A Narrative Review
by Filippo Lococo, Galal Ghaly, Marco Chiappetta, Sara Flamini, Jessica Evangelista, Emilio Bria, Alessio Stefani, Emanuele Vita, Antonella Martino, Luca Boldrini, Carolina Sassorossi, Annalisa Campanella, Stefano Margaritora and Abdelrahman Mohammed
Cancers 2024, 16(10), 1832; https://doi.org/10.3390/cancers16101832 (registering DOI) - 10 May 2024
Abstract
Artificial Intelligence (AI) has revolutionized the management of non-small-cell lung cancer (NSCLC) by enhancing different aspects, including staging, prognosis assessment, treatment prediction, response evaluation, recurrence/prognosis prediction, and personalized prognostic assessment. AI algorithms may accurately classify NSCLC stages using machine learning techniques and deep [...] Read more.
Artificial Intelligence (AI) has revolutionized the management of non-small-cell lung cancer (NSCLC) by enhancing different aspects, including staging, prognosis assessment, treatment prediction, response evaluation, recurrence/prognosis prediction, and personalized prognostic assessment. AI algorithms may accurately classify NSCLC stages using machine learning techniques and deep imaging data analysis. This could potentially improve precision and efficiency in staging, facilitating personalized treatment decisions. Furthermore, there are data suggesting the potential application of AI-based models in predicting prognosis in terms of survival rates and disease progression by integrating clinical, imaging and molecular data. In the present narrative review, we will analyze the preliminary studies reporting on how AI algorithms could predict responses to various treatment modalities, such as surgery, radiotherapy, chemotherapy, targeted therapy, and immunotherapy. There is robust evidence suggesting that AI also plays a crucial role in predicting the likelihood of tumor recurrence after surgery and the pattern of failure, which has significant implications for tailoring adjuvant treatments. The successful implementation of AI in personalized prognostic assessment requires the integration of different data sources, including clinical, molecular, and imaging data. Machine learning (ML) and deep learning (DL) techniques enable AI models to analyze these data and generate personalized prognostic predictions, allowing for a precise and individualized approach to patient care. However, challenges relating to data quality, interpretability, and the ability of AI models to generalize need to be addressed. Collaboration among clinicians, data scientists, and regulators is critical for the responsible implementation of AI and for maximizing its benefits in providing a more personalized prognostic assessment. Continued research, validation, and collaboration are essential to fully exploit the potential of AI in NSCLC management and improve patient outcomes. Herein, we have summarized the state of the art of applications of AI in lung cancer for predicting staging, prognosis, and pattern of recurrence after treatment in order to provide to the readers a large comprehensive overview of this challenging issue. Full article
9 pages, 374 KiB  
Article
Comparative Analysis of Frailty Risk and Associated Factors: Community-Based vs. Open Recruitment Groups
by Tatsunori Shimizu, Ayuto Kodama, Yu Kume, Masahiro Iwakura, Katsuya Iijima and Hidetaka Ota
Int. J. Environ. Res. Public Health 2024, 21(5), 611; https://doi.org/10.3390/ijerph21050611 (registering DOI) - 10 May 2024
Abstract
Background: Frailty leads to vulnerability to stress, impaired daily functioning, and an increased need for care. Frailty is considered reversible, and it is crucial to detect the risk of frailty early and investigate factors that may delay its progression. Objectives: To identify tests [...] Read more.
Background: Frailty leads to vulnerability to stress, impaired daily functioning, and an increased need for care. Frailty is considered reversible, and it is crucial to detect the risk of frailty early and investigate factors that may delay its progression. Objectives: To identify tests that can explain frailty risk and compare the situation of local residents with and without frailty support. Methods: Participants were recruited in two ways: through public advertisements in Akita City (open recruitment group) and through invites from frailty supporters in their immediate communities (community-based group). We examined the differences in frailty risk and oral, motor, and social functions between the two groups and identified factors associated with frailty risk in both groups. Results: The community-based group exhibited a lower risk of frailty than the open recruitment group despite having more older members on average. Additionally, the community-based group demonstrated better social functioning than the open-recruitment group. Furthermore, factors such as oral diadochokinesis (ODK), one-leg stand test (OLS), and grip strength (GS) showed significant association with frailty risk. Conclusion: The ODK, OLS, and GS were identified as factors explaining frailty risk, and Frailty Supporters may reduce the risk of frailty. Full article
64 pages, 1456 KiB  
Review
Insights in Molecular Therapies for Hepatocellular Carcinoma
by Philipp Heumann, Andreas Albert, Karsten Gülow, Deniz Tümen, Martina Müller and Arne Kandulski
Cancers 2024, 16(10), 1831; https://doi.org/10.3390/cancers16101831 (registering DOI) - 10 May 2024
Abstract
We conducted a comprehensive review of the current literature of published data and clinical trials (MEDLINE), as well as published congress contributions and active recruiting clinical trials on targeted therapies in hepatocellular carcinoma. Combinations of different agents and medical therapy along with radiological [...] Read more.
We conducted a comprehensive review of the current literature of published data and clinical trials (MEDLINE), as well as published congress contributions and active recruiting clinical trials on targeted therapies in hepatocellular carcinoma. Combinations of different agents and medical therapy along with radiological interventions were analyzed for the setting of advanced HCC. Those settings were also analyzed in combination with adjuvant situations after resection or radiological treatments. We summarized the current knowledge for each therapeutic setting and combination that currently is or has been under clinical evaluation. We further discuss the results in the background of current treatment guidelines. In addition, we review the pathophysiological mechanisms and pathways for each of these investigated targets and drugs to further elucidate the molecular background and underlying mechanisms of action. Established and recommended targeted treatment options that already exist for patients are considered for systemic treatment: atezolizumab/bevacizumab, durvalumab/tremelimumab, sorafenib, lenvatinib, cabozantinib, regorafenib, and ramucirumab. Combination treatment for systemic treatment and local ablative treatment or transarterial chemoembolization and adjuvant and neoadjuvant treatment strategies are under clinical investigation. Full article
(This article belongs to the Section Molecular Cancer Biology)
16 pages, 1219 KiB  
Article
Elevation Accuracy of Forest Road Maps Derived from Aerial Imaging, Airborne Laser Scanning and Mobile Laser Scanning Data
by Miroslav Kardoš, Ivan Sačkov, Julián Tomaštík, Izabela Basista, Łukasz Borowski and Michal Ferenčík
Forests 2024, 15(5), 840; https://doi.org/10.3390/f15050840 (registering DOI) - 10 May 2024
Abstract
Forest road maps are a fundamental source of information for the sustainable management, protection, and public utilization of forests. However, the precision of these maps is crucial to their use. In this context, we assessed and compared the elevation accuracy of terrain on [...] Read more.
Forest road maps are a fundamental source of information for the sustainable management, protection, and public utilization of forests. However, the precision of these maps is crucial to their use. In this context, we assessed and compared the elevation accuracy of terrain on three forest road surfaces (i.e., asphalt, concrete, and stone), which were derived based on data from three remote sensing technologies (i.e., aerial imaging, airborne laser scanning, and mobile laser scanning) using five geospatial techniques (i.e., inverse distance; natural neighbor; and conversion by average, maximal, and minimal elevation value). Specifically, the elevation accuracy was assessed based on 700 points at which elevation was measured in the field, and these elevations were extracted from fifteen derived forest road maps with a resolution of 0.5 m. The highest precision was found on asphalt roads derived from mobile laser scanning data (RMSE from ±0.01 m to ±0.04 m) and airborne laser scanning data (RMSE from ±0.03 m to ±0.04 m). On the other hand, the lowest precision was found on all roads derived from aerial imaging data (RMSE from ±0.11 m to ±0.23 m). Furthermore, we found significant differences in elevation between the measured and derived terrains. However, the differences in elevation between specific techniques, such as inverse distance, natural neighbor, and conversion by average, were mostly random. Moreover, we found that airborne and mobile laser scanning technologies provided terrain on concrete and stone roads with random elevation differences. In these cases, it is possible to replace a specific technique or technology with one that is similar without significantly decreasing the elevation accuracy (α = 0.05). Full article
(This article belongs to the Special Issue Recent Advances in Forests Roads Research)
16 pages, 2651 KiB  
Article
Evaluation of Radio Frequency Identification Power and Unmanned Aerial Vehicle Altitude in Plant Inventory Applications
by Van Patiluna, Joe Mari Maja and James Robbins
AgriEngineering 2024, 6(2), 1319-1334; https://doi.org/10.3390/agriengineering6020076 (registering DOI) - 10 May 2024
Abstract
In the business of growing and selling ornamental plants, it is important to keep track of plants from nursery to distribution. Radio Frequency Identification (RFID) technology provides an easier tracking method for inventories of plants by attaching tags with unique identifiers. Due to [...] Read more.
In the business of growing and selling ornamental plants, it is important to keep track of plants from nursery to distribution. Radio Frequency Identification (RFID) technology provides an easier tracking method for inventories of plants by attaching tags with unique identifiers. Due to the vast area of most nurseries, there is a need to have an efficient method of scanning RFID tags. This paper investigates the use of drones and RFID, specifically, the effects of RFID reader power and flight altitude on tag counts. The experimental setup evaluated three RFID reader power levels (15 dBm, 20 dBm, and 27 dBm), three flight altitudes (3 m, 5 m, and 7 m), the number of passes (one or two), and two plant types (‘Green Giant’ arborvitae and ‘Sky Pencil’ holly). For RFID tags, four types were used (L5, L6, L8, and L9), with two antenna types (dog-bone and square-wave) and two attachment types (loop-lock and stake). For each power level, the UAV was flown to three different altitudes of 3 m, 5 m, and 7 m above the ground. At each altitude, two scan passes were performed at a constant speed of approximately 1.5 m/s. Each plot of plants (two in total) was randomly tagged with a total of 40 RFID tags per plot. Field data were collected from September to December 2023 (on a total of eight dates). The data showed that a power level of 15 dBm and an altitude of 3 m yielded a tag count of 53%, while counts of 34% and 16% were achieved at 5 m and 7 m, respectively. At 20 dBm and an altitude of 3 m, the count accuracy across all tag types and both plants was 90%. When the altitude was increased to 5 m and 7 m, tag-count accuracy dropped to 75% and 33%, respectively. The highest count accuracy was observed at 27 dBm and an altitude of 3 m, with a reading accuracy of 98%. Tag types L6 and L9 performed better at any power level and altitude, while L5 and L8 performed well at a higher power level and lower altitude. In this experiment, canopy properties (size and shape) had no effect on the number of tags read. This study aimed to evaluate the RFID power and UAV altitude achieving the highest accuracy in scanning the RFID tags. Furthermore, it also assessed the effects of plant growth on the scanning efficiency and accuracy of the system. Full article
23 pages, 3154 KiB  
Article
Implementation and Verification of a Micro-Jet-Vane System of a Solid Rocket Motor for a Micro-Nano Satellite
by Gang Zhang, Wen Feng, Youwen Tan, Yang Liu and Weihua Hui
Aerospace 2024, 11(5), 384; https://doi.org/10.3390/aerospace11050384 (registering DOI) - 10 May 2024
Abstract
To achieve rapid vector maneuvering of a space micro-nano satellite, a micro-sized solid rocket motor was utilized as its propulsion system, and a micro-jet-vane-thrust-vector control system was devised. Computational fluid dynamics (CFD) numerical simulations were conducted on the designed micro-vane structure at various [...] Read more.
To achieve rapid vector maneuvering of a space micro-nano satellite, a micro-sized solid rocket motor was utilized as its propulsion system, and a micro-jet-vane-thrust-vector control system was devised. Computational fluid dynamics (CFD) numerical simulations were conducted on the designed micro-vane structure at various deflection angles to ascertain the lateral force and flow field characteristics. The motor’s combustion temperature is 1380 K. Therefore, materials such as 45 steel, alumina ceramics, and tungsten–molybdenum alloy were chosen for the jet vanes to carry out ground-based-motor-jet-ablation experiments and measure the ablation amount. Concurrently, experimental data, including lateral force, were gathered. The tests demonstrated that despite 45 steel having a higher melting point than the combustion temperature significant ablation still occurred. Alumina ceramics exhibited defects and experienced ablation and fragmentation post-test. In contrast, tungsten–molybdenum alloy, being a refractory metal, showed minimal ablation after testing, making it an ideal material for micro-jet vanes. At a 20° deflection of the jet vanes, the lateral force calculated via numerical simulation was 3.76 N, whereas the lateral force obtained from the test was approximately 3.8 N, resulting in an error within 1% and validating the numerical simulation’s validity and accuracy. The jet vanes can generate a maximum steering angle of 8°, thus ensuring the micro-nano satellite’s swift vector maneuvering at large angles. Full article
14 pages, 906 KiB  
Article
Mitochondrial Genomic Evidence of Selective Constraints in Small-Bodied Terrestrial Cetartiodactyla
by Xuesong Mei, Xibao Wang, Xiaoyang Wu, Guangshuai Liu, Yao Chen, Shengyang Zhou, Yongquan Shang, Zhao Liu, Xiufeng Yang, Weilai Sha and Honghai Zhang
Animals 2024, 14(10), 1434; https://doi.org/10.3390/ani14101434 (registering DOI) - 10 May 2024
Abstract
Body size may drive the molecular evolution of mitochondrial genes in response to changes in energy requirements across species of different sizes. In this study, we perform selection pressure analysis and phylogenetic independent contrasts (PIC) to investigate the association between molecular evolution of [...] Read more.
Body size may drive the molecular evolution of mitochondrial genes in response to changes in energy requirements across species of different sizes. In this study, we perform selection pressure analysis and phylogenetic independent contrasts (PIC) to investigate the association between molecular evolution of mitochondrial genome protein-coding genes (mtDNA PCGs) and body size in terrestrial Cetartiodactyla. Employing selection pressure analysis, we observe that the average non-synonymous/synonymous substitution rate ratio (ω) of mtDNA PCGs is significantly reduced in small-bodied species relative to their medium and large counterparts. PIC analysis further confirms that ω values are positively correlated with body size (R2 = 0.162, p = 0.0016). Our results suggest that mtDNA PCGs of small-bodied species experience much stronger purifying selection as they need to maintain a heightened metabolic rate. On the other hand, larger-bodied species may face less stringent selective pressures on their mtDNA PCGs, potentially due to reduced relative energy expenditure per unit mass. Furthermore, we identify several genes that undergo positive selection, possibly linked to species adaptation to specific environments. Therefore, despite purifying selection being the predominant force in the evolution of mtDNA PCGs, positive selection can also occur during the process of adaptive evolution. Full article
(This article belongs to the Section Animal Genetics and Genomics)
18 pages, 2073 KiB  
Article
Determination of Optimal Machining Parameters Based on Roughness and Vibration Measurements of Pieces Produced by Whirling on a Lathe Machine
by Zlatko Botak, Katarina Pisačić, Marko Horvat and Tanja Tomić
Machines 2024, 12(5), 328; https://doi.org/10.3390/machines12050328 (registering DOI) - 10 May 2024
Abstract
Worms can be produced using special machines or standard lathes equipped with a whirling thread-cutting device. A blank is placed on the mandrel and tightened using the three-jawed chuck of the standard lathe. If the workpiece diameter is excessively large, passage through the [...] Read more.
Worms can be produced using special machines or standard lathes equipped with a whirling thread-cutting device. A blank is placed on the mandrel and tightened using the three-jawed chuck of the standard lathe. If the workpiece diameter is excessively large, passage through the driven pulley is not possible, and the workpiece cannot be supported. Therefore, a new tool holder for whirling devices is needed. During the whirling process, vibrations in the form of machine velocity amplitudes were measured. After whirling was complete, roughness values were calculated. Using numerical procedures of Wolfram Mathematica 10, vibration peaks were extracted, from which frequencies and maximum amplitudes were determined. The data were then inputted into Design Expert, and the rotational speed and amount of separated material were optimized. The results of the study showed that the quality of the processed surface did not improve with processing in two passes of the tool. The measured vibration amplitudes on the lathe carrier and thread whirling attachment increased with cutting speed at the same cutting depth, whereas the quality of the machined surface was best at the smallest and largest cutting depths. Full article

Open Access Journals

Browse by Indexing Browse by Subject Selected Journals
Back to TopTop