The 2023 MDPI Annual Report has
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17 pages, 1885 KiB  
Review
Current Perspectives of Mitochondria in Sepsis-Induced Cardiomyopathy
by Tatsuki Kuroshima, Satoshi Kawaguchi and Motoi Okada
Int. J. Mol. Sci. 2024, 25(9), 4710; https://doi.org/10.3390/ijms25094710 (registering DOI) - 26 Apr 2024
Abstract
Sepsis-induced cardiomyopathy (SICM) is one of the leading indicators for poor prognosis associated with sepsis. Despite its reversibility, prognosis varies widely among patients. Mitochondria play a key role in cellular energy production by generating adenosine triphosphate (ATP), which is vital for myocardial energy [...] Read more.
Sepsis-induced cardiomyopathy (SICM) is one of the leading indicators for poor prognosis associated with sepsis. Despite its reversibility, prognosis varies widely among patients. Mitochondria play a key role in cellular energy production by generating adenosine triphosphate (ATP), which is vital for myocardial energy metabolism. Over recent years, mounting evidence suggests that severe sepsis not only triggers mitochondrial structural abnormalities such as apoptosis, incomplete autophagy, and mitophagy in cardiomyocytes but also compromises their function, leading to ATP depletion. This metabolic disruption is recognized as a significant contributor to SICM, yet effective treatment options remain elusive. Sepsis cannot be effectively treated with inotropic drugs in failing myocardium due to excessive inflammatory factors that blunt β-adrenergic receptors. This review will share the recent knowledge on myocardial cell death in sepsis and its molecular mechanisms, focusing on the role of mitochondria as an important metabolic regulator of SICM, and discuss the potential for developing therapies for sepsis-induced myocardial injury. Full article
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17 pages, 4671 KiB  
Article
RNA-Seq of an LPS-Induced Inflammation Model Reveals Transcriptional Profile Patterns of Inflammatory Processes
by Kisung Sheen, Seokho Myung, Dong-Min Lee, Sanghyeon Yu, Yueun Choi, Taeyoon Kim, Jihan Kim, Sang-Gu Ji, Myung-Seo Kim, Wonnam Kim, Yoonsung Lee, Man S. Kim and Yeon-Cheol Park
Life 2024, 14(5), 558; https://doi.org/10.3390/life14050558 (registering DOI) - 26 Apr 2024
Abstract
The LPS-induced inflammation model is widely used for studying inflammatory processes due to its cost-effectiveness, reproducibility, and faithful representation of key hallmarks. While researchers often validate this model using clinical cytokine markers, a comprehensive understanding of gene regulatory mechanisms requires extending investigation beyond [...] Read more.
The LPS-induced inflammation model is widely used for studying inflammatory processes due to its cost-effectiveness, reproducibility, and faithful representation of key hallmarks. While researchers often validate this model using clinical cytokine markers, a comprehensive understanding of gene regulatory mechanisms requires extending investigation beyond these hallmarks. Our study leveraged multiple whole-blood bulk RNA-seq datasets to rigorously compare the transcriptional profiles of the well-established LPS-induced inflammation model with those of several human diseases characterized by systemic inflammation. Beyond conventional inflammation-associated systems, we explored additional systems indirectly associated with inflammatory responses (i.e., ISR, RAAS, and UPR) using a customized core inflammatory gene list. Our cross-condition-validation approach spanned four distinct conditions: systemic lupus erythematosus (SLE) patients, dengue infection, candidemia infection, and staphylococcus aureus exposure. This analysis approach, utilizing the core gene list aimed to assess the model’s suitability for understanding the gene regulatory mechanisms underlying inflammatory processes triggered by diverse factors. Our analysis resulted in elevated expressions of innate immune-associated genes, coinciding with suppressed expressions of adaptive immune-associated genes. Also, upregulation of genes associated with cellular stresses and mitochondrial innate immune responses underscored oxidative stress as a central driver of the corresponding inflammatory processes in both the LPS-induced and other inflammatory contexts. Full article
(This article belongs to the Special Issue Recent Advances in Functional Genomics)
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16 pages, 5236 KiB  
Article
Evaluation of the Best Management Practices for Reducing Phosphorus Load in a Watershed in Terms of Cost and Greenhouse Gas Emissions
by Dae Seong Jeong, Joon Ha Kim, Jin Hwi Kim and Yongeun Park
Agronomy 2024, 14(5), 906; https://doi.org/10.3390/agronomy14050906 (registering DOI) - 26 Apr 2024
Abstract
Effective management of water quality in watersheds is crucial because it is directly linked to the sustainability of aquatic ecosystems. In conventional watershed management, best management practices (BMPs) have been instrumental in addressing deteriorating water quality issues caused by non-point source pollution. Greenhouse [...] Read more.
Effective management of water quality in watersheds is crucial because it is directly linked to the sustainability of aquatic ecosystems. In conventional watershed management, best management practices (BMPs) have been instrumental in addressing deteriorating water quality issues caused by non-point source pollution. Greenhouse gas (GHG) emissions have emerged as a global concern, necessitating immediate and diverse environmental actions to mitigate their impacts. This study aims to explore BMPs that maximize total phosphorus (TP) load removal efficiencies, while minimizing costs and GHG emissions within watersheds, using the Soil and Water Assessment Tool (SWAT) and non-dominated sorting genetic algorithm III (NSGA-III). The Yeongsan River Watershed between 2012 and 2021 was selected as the study area. Hydrological and BMP data were analyzed. Applying identical BMPs to the watershed showed that the BMPs with high TP removal efficiency may not be effective in terms of cost and GHG emissions. Therefore, the optimal combination of BMPs for the Yeongsan River Watershed was determined using NSGA-III considering TP removal efficiency, cost, and GHG emissions. This study is the first to consider GHG emissions at the watershed level when applying BMPs and is expected to contribute to the development of BMP implementation incorporating GHG emissions. Full article
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13 pages, 6884 KiB  
Article
Genome-Wide Identification and Analysis of Plasma Membrane H+-ATPases Associated with Waterlogging in Prunus persica (L.) Batsch
by Yuyan Zhang, Qinsi Mao, Xin Guo, Ruijuan Ma, Mingliang Yu, Jianlan Xu and Shaolei Guo
Agronomy 2024, 14(5), 908; https://doi.org/10.3390/agronomy14050908 (registering DOI) - 26 Apr 2024
Abstract
Plant plasma membrane H+-ATPase is a transport protein that is generally located on the plasma membrane and generates energy by hydrolyzing adenosine triphosphate (ATP) to pump hydrogen ions (H+) in the cytoplasm out of the cell against a concentration [...] Read more.
Plant plasma membrane H+-ATPase is a transport protein that is generally located on the plasma membrane and generates energy by hydrolyzing adenosine triphosphate (ATP) to pump hydrogen ions (H+) in the cytoplasm out of the cell against a concentration gradient. The plasma membrane H+-ATPases in plants are encoded by a multigene family and potentially play a fundamental role in regulating plant responses to various abiotic stresses, thus contributing to plant adaptation under adverse conditions. To understand the characteristics of the plasma membrane H+-ATPase family in peach (Prunus persica), this study analyzed the plasma membrane H+-ATPase family genes in peach. The results showed that there were 27 members of the plasma membrane H+-ATPase family in peach with amino acid sequences ranging from 943 to 1327. Subcellular localization showed that 23 of the 27 members were located on the cell membrane, and the phylogenetic tree analysis indicated that peach plasma membrane H+-ATPase members were divided into five groups. There were four genes with tandem repeat relationships, and six plasma membrane H+-ATPase genes were differentially expressed after 5 days of flooding and under non-flooding conditions based on the RNA-seq and RT-qPCR analyses. This study also investigated the characteristics and possible functions of the plasma membrane H+-ATPase family members in peach. The results provide theoretical support for further studies on their biological functions in peach. Full article
(This article belongs to the Special Issue Crop and Vegetable Physiology under Environmental Stresses)
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32 pages, 32436 KiB  
Article
Assessment of Site Effects and Numerical Modeling of Seismic Ground Motion to Support Seismic Microzonation of Dushanbe City, Tajikistan
by Farkhod Hakimov, Hans-Balder Havenith, Anatoly Ischuk and Klaus Reicherter
Geosciences 2024, 14(5), 117; https://doi.org/10.3390/geosciences14050117 (registering DOI) - 26 Apr 2024
Abstract
In the territory of Dushanbe city, the capital of Tajikistan, detailed geological and geophysical data were collected during geophysical surveys in 2019–2020. The data comprise 5 microtremor array measurements, 9 seismic refraction tomography profiles, seismological data from 5 temporary seismic stations for standard [...] Read more.
In the territory of Dushanbe city, the capital of Tajikistan, detailed geological and geophysical data were collected during geophysical surveys in 2019–2020. The data comprise 5 microtremor array measurements, 9 seismic refraction tomography profiles, seismological data from 5 temporary seismic stations for standard spectral ratio calculations, 60 borehole datasets, and 175 ambient noise measurements. The complete dataset for Dushanbe was used to build a consistent 3D geologic model of the city with a size of 12 × 12 km2. The results of the seismological and geophysical surveys were compared and calibrated with borehole data to define the boundaries of each layer in the study area. The Leapfrog Works software was utilized to create a 3D geomodel. From the 3D geomodel, we extracted six 12 km long 2D geological cross-sections. These 2D geological cross-sections were used for 2D dynamic numerical modeling with the Universal Distinct Element Code software to calculate the local seismic response. Finally, the dynamic numerical modeling results were compared with the amplification functions obtained from the seismological and ambient noise data analysis. The 2D dynamic numerical modeling results allowed a better assessment of the site effects in the study area to support seismic microzonation and the determination of local peak ground acceleration changes in combination with regional seismic hazard maps. In addition, our results confirm the strong seismic amplification effects noted in some previous studies, which are attributed to the influence of local topographic and subsurface characteristics on seismic ground motions. Full article
(This article belongs to the Special Issue New Trends in Earthquake Engineering and Seismotectonics)
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16 pages, 15226 KiB  
Article
Evolution Characterization and Pathogenicity of an NADC34-like PRRSV Isolated from Inner Mongolia, China
by Hong-Zhe Zhao, Chun-Yu Liu, Hai Meng, Cheng-Long Sun, Hong-Wen Yang, Hao Wang, Jian Zou, Peng Li, Feng-Ye Han, Gen Qi, Yang Zhang, Bing-Bing Lin, Chuang Liu, Meng-Meng Chen, Pan-Ling Zhang, Xiao-Dong Chen, Yi-Di Zhang, Qian-Jin Song, Yong-Jun Wen and Feng-Xue Wang
Viruses 2024, 16(5), 683; https://doi.org/10.3390/v16050683 (registering DOI) - 26 Apr 2024
Abstract
Porcine reproductive and respiratory syndrome virus (PRRSV) is a pathogen that causes severe abortions in sows and high piglet mortality, resulting in huge economic losses to the pig industry worldwide. The emerging and novel PRRSV isolates are clinically and biologically important, as there [...] Read more.
Porcine reproductive and respiratory syndrome virus (PRRSV) is a pathogen that causes severe abortions in sows and high piglet mortality, resulting in huge economic losses to the pig industry worldwide. The emerging and novel PRRSV isolates are clinically and biologically important, as there are likely recombination and pathogenic differences among PRRSV genomes. Furthermore, the NADC34-like strain has become a major epidemic strain in some parts of China, but the characterization and pathogenicity of the latest strain in Inner Mongolia have not been reported in detail. In this study, an NADC34-like strain (CHNMGKL1-2304) from Tongliao City, Inner Mongolia was successfully isolated and characterized, and confirmed the pathogenicity in pigs. The phylogenetic tree showed that this strain belonged to sublineage 1.5 and had high homology with the strain JS2021NADC34. There is no recombination between CHNMGKL1-2304 and any other domestic strains. Animal experiments show that the CHNMGKL1-2304 strain is moderately virulent to piglets, which show persistent fever, weight loss and high morbidity but no mortality. The presence of PRRSV nucleic acids was detected in both blood, tissues, nasal and fecal swabs. In addition, obvious pathological changes and positive signals were observed in lung, lymph node, liver and spleen tissues when subjected to hematoxylin–eosin (HE) staining and immunohistochemistry (IHC). This report can provide a basis for epidemiological investigations and subsequent studies of PRRSV. Full article
(This article belongs to the Section Animal Viruses)
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13 pages, 259 KiB  
Article
Echocardiographic Assessment of Left Ventricular Function in Three Oncologic Therapeutic Modalities in Women with Breast Cancer: The ONCO-ECHO Multicenter Study
by Tomasz Gąsior, Beata Zaborska, Paweł Stachowiak, Małgorzata Sikora-Frąc, Katarzyna Mizia-Stec, Jarosław Kasprzak, Artur Bodys, Julia Bijoch, Adrianna Szmagała, Dariusz A. Kosior and Edyta Płońska-Gościniak
J. Clin. Med. 2024, 13(9), 2543; https://doi.org/10.3390/jcm13092543 (registering DOI) - 26 Apr 2024
Abstract
Background: Oncological treatment of breast cancer may be associated with adverse effects on myocardial function. Objectives: The objective of this study was to compare the influence of three oncological treatment methods of intervention on the echocardiographic (ECHO) parameters of left ventricular [...] Read more.
Background: Oncological treatment of breast cancer may be associated with adverse effects on myocardial function. Objectives: The objective of this study was to compare the influence of three oncological treatment methods of intervention on the echocardiographic (ECHO) parameters of left ventricular function. Materials and Methods: One hundred and fifty-five women with breast cancer were divided into three groups depending on the type of therapy used: group I (AC)—anthracyclines; group II (AC + TZ)—anthracyclines + trastuzumab; and group III (RTls+)—anthracyclines with or without trastuzumab + left-sided radiotherapy. Prospective ECHO examinations were performed at baseline and every 3 months, up to 12 months from the start of the therapy. Patients with a history of chemotherapy or who were diagnosed with heart disease were not included in the study. Results: Out of 155 patients, 3 died due to cancer as the primary cause, and 12 withdrew their consent for further observation. Baseline systolic and diastolic ECHO parameters did not differ between the analyzed groups. Cardiotoxicity, according to the LVEF criteria, occurred during follow-up in 20 patients (14.3%), irrespective of the treatment method used. Diastolic echocardiographic parameters did not change significantly after 12 months in each group, except for the left atrial volume index (LAVi), which was significantly higher in the AC + TZ compared to the values in the RTls+ group. Conclusions: All three oncologic therapeutic modalities in women with breast cancer showed no significant differences in relation to the incidence of echocardiographic cardiotoxicity criterion; however, transient systolic decrease in LVEF was most frequently observed in the AC + TZ therapeutic regimen. Left-sided radiotherapy was not associated with excess left ventricular systolic and diastolic dysfunction during a 12-month follow-up period. The predictors of negative changes in diastolic parameters included age and combined anthracycline and trastuzumab therapy. Full article
13 pages, 1047 KiB  
Article
Evaluation of Clinical Remission in Best-Performing Severe Asthmatic Patients Treated for Three Years with Mepolizumab
by Diego Bagnasco, Benedetta Bondi, Marco Caminati, Stefania Nicola, Laura Pini, Manlio Milanese, Luisa Brussino, Gianenrico Senna, Giorgio Walter Canonica and Fulvio Braido
Biomedicines 2024, 12(5), 960; https://doi.org/10.3390/biomedicines12050960 (registering DOI) - 26 Apr 2024
Abstract
Background: In its severe form, where possible, asthma is treated using biological drugs in order to reduce, as much as possible, the use of systemic steroids. Mepolizumab is effective for severe asthma based on key outcomes such as exacerbation and steroid dependence. Its [...] Read more.
Background: In its severe form, where possible, asthma is treated using biological drugs in order to reduce, as much as possible, the use of systemic steroids. Mepolizumab is effective for severe asthma based on key outcomes such as exacerbation and steroid dependence. Its efficacy in terms of the criteria for clinical remission in the short and long term has become of interest. Objective: We aimed to evaluate the effect of mepolizumab in the achievement of clinical remission after 3 years of administration. Methods: In this study, 71 patients who continued mepolizumab for 3 years were assessed for clinical remission according to six different published sets of remission criteria. Results: According to the criteria, 39–52% of patients experienced complete remission in the first year, increasing to 51–73% at 3 years. By classifying patients according to partial and complete remission criteria, proposed by the SANI, we observe 22% of patients in partial remission at one year, achieving complete remission after three years. The baseline factors associated with earlier remission were a higher FEV1, if we consider classifications requiring an FEV1 ≥ 80%, a low OCS dose, and low FeNO levels, in the patients requiring FEV1 stabilization. Conclusions: Clinical remission is possible for patients treated with mepolizumab. The observations at three years compared with the first year indicated that the factors negatively affecting remission delayed rather than prevented it. Earlier treatment could increase the chances of remission. Full article
(This article belongs to the Special Issue Recent Advances in Chronic Rhinosinusitis and Asthma)
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16 pages, 2977 KiB  
Article
Isolation and Identification of Indole Alkaloids from Aspergillus amstelodami BSX001 and Optimization of Ultrasound-Assisted Extraction of Neoechinulin A
by Shuyao Li, Xiaobo Liu, Qiuya Gu and Xiaobin Yu
Microorganisms 2024, 12(5), 864; https://doi.org/10.3390/microorganisms12050864 (registering DOI) - 26 Apr 2024
Abstract
This study aimed to investigate the alkaloid secondary metabolites of Aspergillus amstelodami BSX001, a fungus isolated from Anhua dark tea, and to improve the extraction yield of the active ingredients by optimizing the extraction process. The structural characterization of the compounds was investigated [...] Read more.
This study aimed to investigate the alkaloid secondary metabolites of Aspergillus amstelodami BSX001, a fungus isolated from Anhua dark tea, and to improve the extraction yield of the active ingredients by optimizing the extraction process. The structural characterization of the compounds was investigated using mass spectrometry (MS) and nuclear magnetic resonance (NMR) spectroscopy. The antioxidant activity of echinulin-related alkaloids was evaluated by determining the total reducing power and DPPH radical scavenging capacity. The extraction process of the compound with optimum activity was optimized by a single-factor test and response surface methodology (RSM) combined with Box–Behnken design (BBD). The optimized result was validated. Finally, a new alkaloid 8-hydroxyechinulin (1), and four known alkaloids, variecolorin G (2), echinulin (3), neoechinulin A (4), and eurocristatine (5), were isolated. Echinulin-related compounds 1, 3, and 4 possessed certain antioxidant activities, with IC50 values of 0.587 mg/mL, 1.628 mg/mL, and 0.219 mg/mL, respectively, against DPPH radicals. Their total reducing power at a concentration of 0.5 mg/mL was 0.29 mmol/L, 0.17 mmol/L, and 4.25 mmol/L. The extraction process of neoechinulin A was optimized with the optimum extraction parameters of 72.76% methanol volume fraction, 25 mL/g solid–liquid ratio, and 50.8 °C soaking temperature. Under these conditions, the extraction yield of neoechinulin A was up to 1.500 mg/g. Full article
(This article belongs to the Special Issue Secondary Metabolism of Microorganisms 3.0)
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18 pages, 3646 KiB  
Article
Multimodal Environmental Sensing Using AI & IoT Solutions: A Cognitive Sound Analysis Perspective
by Alexandros Emvoliadis, Nikolaos Vryzas, Marina-Eirini Stamatiadou, Lazaros Vrysis and Charalampos Dimoulas
Sensors 2024, 24(9), 2755; https://doi.org/10.3390/s24092755 (registering DOI) - 26 Apr 2024
Abstract
This study presents a novel audio compression technique, tailored for environmental monitoring within multi-modal data processing pipelines. Considering the crucial role that audio data play in environmental evaluations, particularly in contexts with extreme resource limitations, our strategy substantially decreases bit rates to facilitate [...] Read more.
This study presents a novel audio compression technique, tailored for environmental monitoring within multi-modal data processing pipelines. Considering the crucial role that audio data play in environmental evaluations, particularly in contexts with extreme resource limitations, our strategy substantially decreases bit rates to facilitate efficient data transfer and storage. This is accomplished without undermining the accuracy necessary for trustworthy air pollution analysis while simultaneously minimizing processing expenses. More specifically, our approach fuses a Deep-Learning-based model, optimized for edge devices, along with a conventional coding schema for audio compression. Once transmitted to the cloud, the compressed data undergo a decoding process, leveraging vast cloud computing resources for accurate reconstruction and classification. The experimental results indicate that our approach leads to a relatively minor decrease in accuracy, even at notably low bit rates, and demonstrates strong robustness in identifying data from labels not included in our training dataset. Full article
(This article belongs to the Special Issue Multimodal Sensing Technologies for IoT and AI-Enabled Systems)
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20 pages, 4604 KiB  
Article
Full-Process Adaptive Encoding and Decoding Framework for Remote Sensing Images Based on Compression Sensing
by Huiling Hu, Chunyu Liu, Shuai Liu, Shipeng Ying, Chen Wang and Yi Ding
Remote Sens. 2024, 16(9), 1529; https://doi.org/10.3390/rs16091529 (registering DOI) - 26 Apr 2024
Abstract
Faced with the problem of incompatibility between traditional information acquisition mode and spaceborne earth observation tasks, starting from the general mathematical model of compressed sensing, a theoretical model of block compressed sensing was established, and a full-process adaptive coding and decoding compressed sensing [...] Read more.
Faced with the problem of incompatibility between traditional information acquisition mode and spaceborne earth observation tasks, starting from the general mathematical model of compressed sensing, a theoretical model of block compressed sensing was established, and a full-process adaptive coding and decoding compressed sensing framework for remote sensing images was proposed, which includes five parts: mode selection, feature factor extraction, adaptive shape segmentation, adaptive sampling rate allocation and image reconstruction. Unlike previous semi-adaptive or local adaptive methods, the advantages of the adaptive encoding and decoding method proposed in this paper are mainly reflected in four aspects: (1) Ability to select encoding modes based on image content, and maximizing the use of the richness of the image to select appropriate sampling methods; (2) Capable of utilizing image texture details for adaptive segmentation, effectively separating complex and smooth regions; (3) Being able to detect the sparsity of encoding blocks and adaptively allocate sampling rates to fully explore the compressibility of images; (4) The reconstruction matrix can be adaptively selected based on the size of the encoding block to alleviate block artifacts caused by non-stationary characteristics of the image. Experimental results show that the method proposed in this article has good stability for remote sensing images with complex edge textures, with the peak signal-to-noise ratio and structural similarity remaining above 35 dB and 0.8. Moreover, especially for ocean images with relatively simple image content, when the sampling rate is 0.26, the peak signal-to-noise ratio reaches 50.8 dB, and the structural similarity is 0.99. In addition, the recovered images have the smallest BRISQUE value, with better clarity and less distortion. In the subjective aspect, the reconstructed image has clear edge details and good reconstruction effect, while the block effect is effectively suppressed. The framework designed in this paper is superior to similar algorithms in both subjective visual and objective evaluation indexes, which is of great significance for alleviating the incompatibility between traditional information acquisition methods and satellite-borne earth observation missions. Full article
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11 pages, 4068 KiB  
Article
Synthesis, Structure and Antibacterial Activity of Two Novel Coordination Polymers Based on N,N′-bis(4-carbozvlbenzvl)-4-aminotoluene and Heterocyclic Ligand against S. aureus
by Ziyun Wang, Lun Zhao, Hongwei Jing, Guanying Song and Jiayu Li
Molecules 2024, 29(9), 1990; https://doi.org/10.3390/molecules29091990 (registering DOI) - 26 Apr 2024
Abstract
As the use of antibiotics increases, the increasing resistance of bacteria is the main reason for the reduced efficiency of antibacterial drugs, making the research of new antibacterial materials become new hot spot. In this article, two novel coordination polymers (CPs), namely, [Cd [...] Read more.
As the use of antibiotics increases, the increasing resistance of bacteria is the main reason for the reduced efficiency of antibacterial drugs, making the research of new antibacterial materials become new hot spot. In this article, two novel coordination polymers (CPs), namely, [Cd2(L)2(bibp)2]n (1) and [Ni(L)(bib)]n (2), where H2L = N,N′-bis(4-carbozvlbenzvl)-4-aminotoluene, bibp = 4,4′-bis(imidazol-1-yl)biphenyl, and bib = 1,3-bis(1-imidazoly)benzene, have been synthesized under solvothermal and hydrothermal condition. Structural clarification was performed through infrared spectrum and single-crystal X-ray diffraction analysis, while thermal analysis and XRD technology were used for the performance assessment of compounds 1 and 2. In addition, antibacterial performance experiments showed that compounds 1 and 2 have certain selectivity in their antibacterial properties and have good antibacterial properties against S. aureus. As the concentration of the compound increases, the inhibitory effect gradually strengthens, and when the concentration of the compound reaches 500 μg/mL and 400 μg/mL, the concentration of the S. aureus solution no longer increases and has been completely inhibited. Full article
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16 pages, 3039 KiB  
Article
Immune-Related Gene Profiles and Differential Expression in the Grey Garden Slug Deroceras reticulatum Infected with the Parasitic Nematode Phasmarhabditis hermaphrodita
by Muhammad Hafeez, Rory Mc Donnell, Andrew Colton, Dana Howe, Dee Denver, Ruth C. Martin and Man-Yeon Choi
Insects 2024, 15(5), 311; https://doi.org/10.3390/insects15050311 (registering DOI) - 26 Apr 2024
Abstract
The grey garden slug (Deroceras reticulatum), a common terrestrial slug native to Europe with a global distribution including North America, is commonly considered the most severe slug pest in agriculture. The nematode Phasmarhabditis hermaphrodita, which has been used in the [...] Read more.
The grey garden slug (Deroceras reticulatum), a common terrestrial slug native to Europe with a global distribution including North America, is commonly considered the most severe slug pest in agriculture. The nematode Phasmarhabditis hermaphrodita, which has been used in the U.K. and Europe as a commercial biocontrol agent since 1994, has also recently been collected in Oregon and California and has long been considered a candidate biocontrol agent for slug management in the U.S. In this study, we report differential gene expressions in nematode-infected slugs using RNA-seq to identify slug immune-related genes against nematodes. Comparison of gene expression levels between the whole bodies of a nematode-infected slug (N-S) and an uninfected control slug (C-S) revealed that there were a total of 39,380 regulated unigenes, of which 3084 (3%) were upregulated and 6761 (6%) were downregulated at greater than 2-fold change (FC > 2) in the nematode-infected slug. To further investigate the biological functions of differentially expressed genes (DEGs), gene ontology (GO) and functional enrichment analysis were performed to map the DEGs to terms in the GO, eukaryotic ortholog groups of proteins (KOG) and Kyoto Encyclopedia of Genes and Genome Pathway (KEGG) databases. Among these DEGs, approximately 228 genes associated with immunity or immune-related pathways were upregulated 2-fold or more in the N-S compared to C-S. These genes include toll, Imd, JNK, scavenger receptors (SCRs), C-type lectins (CTLs), immunoglobulin-like domains, and JAK/STAT63 signaling pathways. From the RNA-seq results, we selected 18 genes and confirmed their expression levels by qRT-PCR. Our findings provide insights into the immune response of slugs during nematode infection. These studies provide fundamental information that will be valuable for the development of new methods of pest slug control using pathogenic nematodes in the field. Full article
(This article belongs to the Section Insect Molecular Biology and Genomics)
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21 pages, 551 KiB  
Article
An Analytical Model of IaaS Architecture for Determining Resource Utilization
by Slawomir Hanczewski, Maciej Stasiak and Michal Weissenberg
Sensors 2024, 24(9), 2758; https://doi.org/10.3390/s24092758 (registering DOI) - 26 Apr 2024
Abstract
Cloud computing has become a major component of the modern IT ecosystem. A key contributor to this has been the development of Infrastructure as a Service (IaaS) architecture, in which users’ virtual machines (VMs) are run on the service provider’s physical infrastructure, making [...] Read more.
Cloud computing has become a major component of the modern IT ecosystem. A key contributor to this has been the development of Infrastructure as a Service (IaaS) architecture, in which users’ virtual machines (VMs) are run on the service provider’s physical infrastructure, making it possible to become independent of the need to purchase one’s own physical machines (PMs). One of the main aspects to consider when designing such systems is achieving the optimal utilization of individual resources, such as processor, RAM, disk, and available bandwidth. In response to these challenges, the authors developed an analytical model (the ARU method) to determine the average utilization levels of the aforementioned resources. The effectiveness of the proposed analytical model was evaluated by comparing the results obtained by utilizing the model with those obtained by conducting a digital simulation of the operation of a cloud system according to the IaaS paradigm. The results show the effectiveness of the model regardless of the structure of the emerging requests, the variability of the capacity of individual resources, and the number of physical machines in the system. This translates into the applicability of the model in the design process of cloud systems. Full article
(This article belongs to the Special Issue Recent Trends and Advances in Telecommunications and Sensing)
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24 pages, 23162 KiB  
Article
An Experimental Procedure to Study the High-Speed Orthogonal Cutting of Unidirectional GFRP
by Martina Panico, Luca Boccarusso, Antonio Formisano, Giuseppe Villani and Antonio Langella
J. Manuf. Mater. Process. 2024, 8(3), 87; https://doi.org/10.3390/jmmp8030087 (registering DOI) - 26 Apr 2024
Abstract
The aim of this paper is to establish a valid procedure for better understanding all of the phenomena associated with the high-speed machining of glass fiber-reinforced plastic (GFRP) composites. Both rectangular and circular specimens were machined at high cutting speeds (up to 50 [...] Read more.
The aim of this paper is to establish a valid procedure for better understanding all of the phenomena associated with the high-speed machining of glass fiber-reinforced plastic (GFRP) composites. Both rectangular and circular specimens were machined at high cutting speeds (up to 50 m/min) in order to understand what occurred for all values of fiber orientation angles during machining operations. An innovative testing methodology was proposed and studied to investigate the phenomenon of burr formation and thus understand how to avoid it during machining operations. To this end, the forces arising during the machining process and the roughness of the resulting surface were carefully studied and correlated with the cutting angle. Additionally, the cutting surface and chip morphology formed during cutting tests were examined using a high-speed camera. Close correlations were found between the variations in the cutting forces’ signals and the trends of the surface roughness and the morphology of the machined surface. Full article
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9 pages, 287 KiB  
Article
Investigating the Barriers and Facilitators to Using Antiretroviral Therapy among Women Living with HIV in Plateau State, Nigeria
by Emmanuel O. Osayi, Sarah C. Blake, Tolulope Afolaranmi, Oluseye Ajayi, John Onyeji, Atiene S. Sagay, Albert Anderson and Taiwo J. Obindo
Int. J. Environ. Res. Public Health 2024, 21(5), 546; https://doi.org/10.3390/ijerph21050546 (registering DOI) - 26 Apr 2024
Abstract
Background: Women and girls account for more than 50% of the global HIV population. In Nigeria, the proportion of women living with HIV on long-term antiretroviral therapy (ART) has been on the rise. Despite this, little research exists on their experiences regarding antiretroviral [...] Read more.
Background: Women and girls account for more than 50% of the global HIV population. In Nigeria, the proportion of women living with HIV on long-term antiretroviral therapy (ART) has been on the rise. Despite this, little research exists on their experiences regarding antiretroviral therapy use, especially for women living with HIV (WLHIV) in Plateau State, Nigeria. This study investigates the barriers and facilitators influencing antiretroviral therapy use among women living with HIV. Methods: This study employed a qualitative research design, using focus groups, and included women (female sex workers, pregnant and non-pregnant women living with HIV) and the male partners of serodiscordant couples. Eligibility criteria were being 18 years of age or older, on antiretroviral therapy for more than one year/on pre-exposure prophylaxis (PrEP) for more than one month, and speaking English, Hausa, or both. Data coding utilized both inductive and deductive approaches, and standard content analysis was applied to develop emerging themes. Results: Of the 106 participants, 88 were women living with HIV, and 18 were men in serodiscordant couples. The first facilitator shared by the participants was feeling healthier and stronger due to the antiretroviral therapy, which was also expressed by the male participants on PrEP as feeling good while taking the drug. Additional facilitators shared by the participants included weight gain and having a more positive outlook on life. Participants also disproportionately described barriers to using antiretroviral therapy, including experiences with emotional challenges, physical discomfort, and side effects of ART. Such barriers were linked to feelings of past regret, frustration, and disappointment. Conclusion: This study underscores the significance of maintaining a positive perspective on ART use, demonstrated by the connection between a positive outlook and weight gain, and highlights the hurdles that Plateau State’s women living with HIV face in adhering to antiretroviral therapy. Policymakers and healthcare providers can utilize these findings to formulate targeted strategies aimed at minimizing identified barriers and enhancing antiretroviral therapy utilization among this population via peer- support groups, economic empowerment, and psychosocial support. Full article
(This article belongs to the Special Issue Women Living with HIV)
15 pages, 3067 KiB  
Article
Electrochemical Behavior of Natural Manganese Oxides: Transforming Mining Waste into Energy Storage Materials
by George Soulamidis, Maria Kourmousi, Christiana A. Mitsopoulou and Christina Stouraiti
Minerals 2024, 14(5), 455; https://doi.org/10.3390/min14050455 (registering DOI) - 26 Apr 2024
Abstract
The present research explores the potential of manganese oxide waste ore in energy storage applications, focusing on supercapacitors. The investigation assesses the electrochemical capabilities of natural manganese oxides obtained from the Drama region, which has been the main mining center of Greece for [...] Read more.
The present research explores the potential of manganese oxide waste ore in energy storage applications, focusing on supercapacitors. The investigation assesses the electrochemical capabilities of natural manganese oxides obtained from the Drama region, which has been the main mining center of Greece for manganese ore, especially that of battery-grade quality. Samples were collected from abandoned mining sites in the Kato Nevrokopi area, Drama. The structure and composition of the manganese minerals were determined by X-ray diffraction (XRD) and transmission electron microscopy (TEM). Electrochemical tests involved the preparation of electrodes using natural nsutite and heat-treated nsutite (hausmannite). Then, the designed electrodes were subjected to cyclic voltammetry tests and charge–discharge measurements. The hausmannite electrode exhibited a higher specific capacitance of 667 F/g at a current density of 0.2 A/g, and the electrode material retained 98.3% of its initial capacitance after 1000 cycles. This study provides new perspectives on simple and efficient methods for transforming natural nsutite material from mining waste to hausmannite with greater structural homogeneity and better electrochemical behavior. Full article
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28 pages, 1921 KiB  
Article
Efficient Modeling of Distributed Energy Resources’ Impact on Electric Grid Technical Losses: A Dynamic Regression Approach
by Alain Aoun, Mehdi Adda, Adrian Ilinca, Mazen Ghandour, Hussein Ibrahim and Saba Salloum
Energies 2024, 17(9), 2053; https://doi.org/10.3390/en17092053 (registering DOI) - 26 Apr 2024
Abstract
Technical losses in electrical grids are inherent inefficiencies induced by the transmission and distribution of electricity, resulting in energy losses that can reach up to 40% of the generated energy. These losses pose significant challenges to grid operators regarding energy sustainability, reliability, and [...] Read more.
Technical losses in electrical grids are inherent inefficiencies induced by the transmission and distribution of electricity, resulting in energy losses that can reach up to 40% of the generated energy. These losses pose significant challenges to grid operators regarding energy sustainability, reliability, and economic viability. Distributed Energy Resources (DERs) offer promising solutions to lower technical losses by decentralizing energy generation and consumption, reducing the need for long-distance transmission and optimizing grid operation. Hence, estimating the impact of DERs on grid technical losses becomes paramount for grid operators and planners. In response, this article proposes the application of regression modeling and nonlinear curve fitting algorithms to provide a more nuanced understanding and better characterize the intricate interplay between DER deployment and technical losses. Through a comprehensive case study based on more than 1080 computer simulations, we demonstrate the effectiveness of our proposed dynamic polynomial varying coefficient regression model in estimating the impact of DERs on technical losses within electrical grids. The proposed model offers a simple and effective methodology that allows grid operators to gain insights into the nonlinear dynamics of DER integration and make quicker and more informed decisions regarding grid management strategies, infrastructure investments, and policy interventions. Also, this research contributes to advancing the field of grid optimization by offering a simple equation that enhances our ability and haste to assess and mitigate technical losses in the context of an evolving energy landscape characterized by increasing DER adoption. Full article
(This article belongs to the Special Issue The Future of Renewable Energy: 2nd Edition)
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10 pages, 258 KiB  
Review
Assisted Reproductive Technologies: A New Player in the Foetal Programming of Childhood and Adult Diseases?
by Gavino Faa, Mirko Manchia and Vassilios Fanos
Pediatr. Rep. 2024, 16(2), 329-338; https://doi.org/10.3390/pediatric16020029 (registering DOI) - 26 Apr 2024
Abstract
Assisted reproductive technology (ART) is an emerging field in medicine that incorporates complex procedures and has profound ethical, moral, social, religious, and economic implications not just for the individuals who have access to this method but also for society. In this narrative review, [...] Read more.
Assisted reproductive technology (ART) is an emerging field in medicine that incorporates complex procedures and has profound ethical, moral, social, religious, and economic implications not just for the individuals who have access to this method but also for society. In this narrative review, we summarise multiple aspects of ART procedures and the possible consequences on the mother and newborn. Moreover, we provide an overview of the possible long-term consequences of ART procedures on the health of newborns, although longitudinal evidence is particularly scant. Users should be informed that ART procedures are not risk-free to prepare them for the possible negative outcomes that may occur in the perinatal period or even in childhood and adulthood. Indeed, risk estimates point to increased liability for major nonchromosomal birth defects; cardiovascular, musculoskeletal, and urogenital (in male newborns) defects; and any other birth defects. Less certainty is present for the risk of neuropsychiatric sequelae in children conceived through ART. Thus, its application should be accompanied by adequate counselling and psychological support, possibly integrated into specific multidisciplinary clinical programmes. Full article
(This article belongs to the Section Inborn Errors and Neonatal Screening)
18 pages, 763 KiB  
Article
Can Cooperatives Enhance the Income-Generating Effect of Eco-Industries for Farmers?—Empirical Evidence from the Crested Ibis National Nature Reserve, China
by Li Ma, Zimeng Chen, Kaiwen Su, Han Zhang, Yali Wen and Yilei Hou
Forests 2024, 15(5), 757; https://doi.org/10.3390/f15050757 (registering DOI) - 26 Apr 2024
Abstract
Promoting the development of eco-industries plays a significant role in achieving the harmonious symbiosis between economic growth and environmental protection as well as enhancing the comprehensive effectiveness of ecological and economic benefits. Due to their unique nature, cooperatives may play a crucial role [...] Read more.
Promoting the development of eco-industries plays a significant role in achieving the harmonious symbiosis between economic growth and environmental protection as well as enhancing the comprehensive effectiveness of ecological and economic benefits. Due to their unique nature, cooperatives may play a crucial role in facilitating the integration between farmers and the development of eco-industries. To investigate whether cooperatives possess the capacity to enhance the income-generating effects for farmers involved in eco-industries, this study selected the Crested Ibis National Nature Reserve (CINNR), a representative area for eco-industry development, as the research site. Data were gathered through face-to-face interviews, and this research empirically analyzed the impact of cooperatives on the income-generating effect of farmers using endogenous switching regression (ESR). The findings are threefold. First, cooperatives indeed enhance the income-generating effects for farmers engaged in eco-industries. Second, variables such as the distribution of agroforestry materials, premium capacity, soil quality, and status of village cadres have a positive impact on farmers joining cooperatives, whereas punishment initiatives discourage their participation. Third, for farmers who have joined cooperatives, factors such as the distribution of agroforestry materials, premium capacity, low-cost conservation initiatives, land area, status of village cadres, the proportion of labor force, technical training, soil quality, and land area positively affect their income from eco-industries. Conversely, punishment initiatives, age, and land location negatively impact their income. The results of this study provide new ideas for farmers to participate in the development of eco-industries, new evidence showing co-operatives can improve farmers’ income, and new directions for coordinating conflicts between conservation and development in protected areas. Full article
14 pages, 3319 KiB  
Article
The Application of Optical Sensors with Built-in Anchor-like Cavities in the Detection of Hemoglobin Concentration
by Wen Jiang, Shubin Yan, Yiru Su, Chong Wang, Taiquan Wu, Yang Cui, Chuanhui Zhu, Yi Zhang, Xiangyang Mu and Guowang Gao
Photonics 2024, 11(5), 402; https://doi.org/10.3390/photonics11050402 (registering DOI) - 26 Apr 2024
Abstract
This paper introduces a refractive index sensor based on Fano resonance, utilizing a metal–insulator–metal (MIM) waveguide structure with an Anchor-like cavity. This study utilizes the finite element method (FEM) for analyzing the propagation characteristics of the structure. The evaluation concentrated on assessing how [...] Read more.
This paper introduces a refractive index sensor based on Fano resonance, utilizing a metal–insulator–metal (MIM) waveguide structure with an Anchor-like cavity. This study utilizes the finite element method (FEM) for analyzing the propagation characteristics of the structure. The evaluation concentrated on assessing how the refractive index and the structure’s geometric parameters affect its sensing characteristics. The designed structure demonstrates optimum performance, achieving a maximum sensitivity of 2440 nm/RIU and an FOM of 63. Given its high sensitivity, this nanoscale refractive index sensor is ideal for detecting hemoglobin concentrations in blood, and the sensor’s sensitivity is 0.6 nm·g/L, aiding in clinical prevention and treatment. Full article
(This article belongs to the Special Issue New Perspectives in Optical Design)
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19 pages, 2748 KiB  
Article
Correction Control Model of L-Index Based on VSC-OPF and BLS Method
by Yude Yang, Jingru Long, Lizhen Yang, Shuqin Mo and Xuesong Wu
Sustainability 2024, 16(9), 3621; https://doi.org/10.3390/su16093621 (registering DOI) - 26 Apr 2024
Abstract
With the advancement of artificial intelligence (AI) technology, the real-time measurement and control technology of power systems has also progressed. This paper proposes a correction control model for L-indexes based on voltage stability constrained optimal power flow (VSC-OPF) and a broad learning system [...] Read more.
With the advancement of artificial intelligence (AI) technology, the real-time measurement and control technology of power systems has also progressed. This paper proposes a correction control model for L-indexes based on voltage stability constrained optimal power flow (VSC-OPF) and a broad learning system (BLS) (BLS-VSC-OPF). This model aims to quickly assess the system’s voltage stability and accurately correct the operation mode when the voltage stability indexes are out of the security range. Firstly, the BLS is used to predict the L-index and to analyze the voltage stability of the power system. Secondly, the approximate first-order sensitivity of the L-index is calculated by the combination of the BLS and the perturbation method. This method solves the problem of the complex sensitivity derivation process in the modeling process of the VSC-OPF model. Meanwhile, when the L-index exceeds the threshold, the BLS and VSC-OPF models are combined to correct this operation mode. The feasibility of the proposed method is verified by the simulation of IEEE-30, IEEE-118, and 1047 bus systems. Finally, the BLS-VSC-OPF model is compared with the linear programming correction model based on BLS (BLS-LPC). The results show that the BLS-VSC-OPF model provides a better correction and control performance. Full article
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11 pages, 2559 KiB  
Article
The Human Phospholipase B-II Precursor (HPLBII-P) in Urine as a Novel Biomarker of Glomerular Activity in COVID-19 and Diabetes Mellitus
by Shengyuan Xu, Michael Hultström, Anders Larsson, Miklos Lipcsey, Cecilia Lindskog, Sara Bülow, Robert Frithiof and Per Venge
J. Clin. Med. 2024, 13(9), 2540; https://doi.org/10.3390/jcm13092540 (registering DOI) - 26 Apr 2024
Abstract
Background: The human phospholipase B-II precursor (HPLBII-P) was originally purified from white blood cells but is also found in other cellular structures, such as kidney glomeruli and tubuli. The objective of this report was to investigate the relationship of HPLBII-P in urine to [...] Read more.
Background: The human phospholipase B-II precursor (HPLBII-P) was originally purified from white blood cells but is also found in other cellular structures, such as kidney glomeruli and tubuli. The objective of this report was to investigate the relationship of HPLBII-P in urine to acute kidney injury in patients with COVID-19. Methods: Urine was collected at admission from 132 patients with COVID-19 admitted to the intensive care units (ICUs) because of respiratory failure. HPLBII-P was measured using a sensitive ELISA. For comparison, human neutrophil lipocalin (HNL) was measured in urine, using the ELISA configured with the monoclonal antibody 763/8F, as a sign of tubular affection in addition to routine biomarkers of kidney disease. Results: Overall, the concentrations of urinary HPLBII-P were almost 3-fold higher in patients with COVID-19 compared to healthy controls (p < 0.0001) and with significantly higher concentrations even in patients with COVID-19 without signs of acute kidney injury (AKI) (p < 0.001). HPLBII-P was further increased in patients with AKI (p < 0.02). HPLBII-P was significantly increased in patients with diabetes mellitus (p = 0.0008) and correlated to plasma glucose (r = 0.29, p = 0.001) and urine albumin concentrations (r = 0.55, p < 0.001). Conclusions: Urine concentrations of HPLBII-P are highly raised in the urine of patients with COVID-19 and relate to AKI and diabetes mellitus. HPLBII-P may reflect glomerular injury and/or increased glomerular cell activity in SARS-CoV-2 infections. Full article
(This article belongs to the Topic Nephrology and Dialysis: From Bench to Bedside)
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