Skip to main content
Log in

Structure and function of poly(ADP-ribose) polymerase

  • Part II: Poly(ADP-ribosyl)ation
  • A. Structure and Enzymology of Poly(ADP-ribose) Polymerase
  • Published:
Molecular and Cellular Biochemistry Aims and scope Submit manuscript

Abstract

Poly(ADP-ribose) polymerase (PARP) participates in the intricate network of systems developed by the eukaryotic cell to cope with the numerous environmental and endogenous genetoxic agents. Cloning of the PARP gene has allowed the development of genetic and molecular approaches to elucidate the structure and the function of this abundant and highly conserved enzyme. This article summarizes our present knowledge in this field.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Althaus F, Richter C: ADP-ribosylation of proteins. Enzymology and biological significance. Mol. Biol. Biochem, Biophys. 37: 1–126, 1987

    Google Scholar 

  2. Kameshita I, Matsuda Z, Tanigushi T, Shizuta Y: Poly(ADP-ribose) synthetase, Separation and identification of three proteolytic fragments as the substrate-binding domain, the DNA binding domain, and the automodification domain. J. Biol. Chem. 259: 4770–4776, 1984

    PubMed  Google Scholar 

  3. Uchida K, Morita T, Sato T, Ogura T, Yamashita R, Mogushi S, Suzuki H, Nyunoya H, Miwa M, Sugimura T: Nucleotide sequence of a full-length cDNA for human fibroblast poly(ADP-ribose) polymerase. Biochem. Biophys. Res. Commun. 148: 617–622, 1987

    PubMed  Google Scholar 

  4. Huppi K, Bhatia K, Siwarski D, Klinman D, Cherney B, Smulson M: Sequence and organization of the mouse poly(ADP-ribose) polymerase gene. Nucleic Acids Res 17: 3387–3401, 1989

    PubMed  Google Scholar 

  5. Saito I, Hatakeyama K, Kido T, Ohkubo H, Nakanishi S, Ueda K: Cloning of full-length cDNA encoding bovine thymus poly(ADP-ribose synthetase: Evolutionarily conserved segments and their potential functions. Gene 90: 249–254, 1990

    PubMed  Google Scholar 

  6. Ittel M E, Garnier J M, Jeltsh J M, Niedergang C P: Chicken poly(ADP-ribose) polymerase: complete sequence deduced from cDNA, comparison with mammalian enzyme sequences. Gene 102: 157–164, 1991

    PubMed  Google Scholar 

  7. Saulier B: Ph.D. Thesis: Isolement et caractérisation d'un ADN complementaire de la poly(ADP-ribose) polymerase chez l'amphibienXenopus Laevis., Université de Rennes, 1993

  8. Uchida K, Hanai S, Ishikawa K, Ozawa Y, Ozawa Y, Uchida M, Sugimura T, Miwa M: Cloning of cDNA encoding Drosophila poly(ADP-ribose) polymerase: leucine zipper in the auto-modification domain. Proc Natl Acad, Sci. USA 90: 3481–34885, 1993

    Google Scholar 

  9. Ménissier-de Murcia J, Molinete M, Gradwohl G, Simonin F, de Murcia G: Zinc binding domain of poly(ADP-ribose) polymerase participates in the recognition of single strand breaks on DNA. J. Mol. Biol. 210: 229–233, 1989

    PubMed  Google Scholar 

  10. Gradwohl G, Ménissier-de Murcia J, Molinete M, Simonin F, Koken M, Hoeijmakers J H J, de Murcia G: The second zinc-finger domain of poly(ADP-ribose) polymerase determines specificity for single-stranded breaks in DNA. Proc Natl. Acad. Sci. USA 87: 2990–2994, 1990

    PubMed  Google Scholar 

  11. Schreiber V, Molinete M, Boeuf H, de Murcia G, Ménissier-de Murcia J: The human poly(ADP-ribose) polymerase nuclear localization signal is a bipartite element functionally separate from DNA binding and catalytic activity. EMBO J 11: 3263–3269, 1992

    PubMed  Google Scholar 

  12. Simonin F, Ménissier-de Murcia J, Poch O, Muller S, Gradwohl G, Molinete M, Penning C, Keith G, de Murcia G: Expression of sitedirected mutagenesis of the catalytic domain of human poly(ADP-ribose) polymerase in Escherichia coli. J. Biol. Chem. 265: 19249–19256, 1990

    PubMed  Google Scholar 

  13. Simonin F, Poch O, Delarue M, de Murcia G: identification of potential active-site residues in the poly(ADP-ribose) polymerase. J. Biol. Chem. 258: 8529–8535, 1993

    Google Scholar 

  14. Simonin F. Höfferer L, Panzeter P, Muller S, de Murcia G, Althaus F: The carboxy-terminal domain of human poly(ADP-ribose) poly-merase: overproduction inEscherichia coli, large scale purification and characterization. J. Biol. Chem. 268: 13454–13461, 1993

    PubMed  Google Scholar 

  15. Zahradka P, Ebisuzaki K: Poly(ADP-ribose) polymerase is a zinc metalloenzyme. Eur. J. Biochem. 142: 503–509, 1984

    PubMed  Google Scholar 

  16. Mazen A, Ménissier-de Murcia J, Molinete M, Simonin F, Gradwohl G, Poirier G G, de Murcia G: Poly(ADP-ribose) polymerase: A novel Finger Protein. Nucleic Acids Res. 17: 4689–4698, 1989

    PubMed  Google Scholar 

  17. Mazen A, Gradwohl G, de Murcia G: Zinc-binding protein detected by protein blotting. Anal. Biochem. 172: 39–42, 1988

    PubMed  Google Scholar 

  18. Tanaka K, Miura N, Satokata I, Miyamoto I, Yoshida C, Satoh Y, Kond S, Yasui A, Okayama H, Okada Y: Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain. Nature. 348: 73–76, 1990

    PubMed  Google Scholar 

  19. O'Connor T, Graves R, de Murcia G, Castaing B, Laval J: Fpg protein ofEscherichia coli is a zinc finger protein whose cystein residues have a structural and/or functional role. J. Biol. Chem. 268: 9063–9070, 1993

    PubMed  Google Scholar 

  20. Benjamin RC, Gill DM: Poly(ADP-ribose) synthesis in vitro programmed by damaged DNA. J. Biol. Chem. 255: 10502–10508, 1980

    PubMed  Google Scholar 

  21. Gradwohl G, Mazen A, de Murcia G: Poly(ADP-ribose) polymerase forms loops with DNA. Biochem, Biophys, Res. Commun. 148: 913–919, 1987

    Google Scholar 

  22. Sastry S, Kun E: The interaction of adenosine diphosphoribosyl transferase (ADPRT) with a cruciform DNA. Biochem. Biophys. Res. Commun. 167: 842–847, 1990

    PubMed  Google Scholar 

  23. Molinete M, Vermeulen W, Bürkle A, Ménissier-de Murcia J, Küpper J, Hoeijmakers J, de Murcia G: Overproduction of the poly(ADP-ribose) polymerase DNA-binding domain blocks alkylation-induced DNA repair synthesis in mammalian cells. EMBO J., 5: 2109–2117, 1993

    Google Scholar 

  24. Ikejima M, Noguchi S, Yamashita R, Ogura T, Sugimura T, Gill M, Miwa M: The zinc fingers of human poly(ADP-ribose) polymerase are differentially required for the recognition of DNA breaks and nicks and the consequent enzyme activation. J. Biol. Chem. 265, 21907–21913. 1990

    PubMed  Google Scholar 

  25. Schreiber V, de Murcia G, Ménissier-de Murcia J: Le transport des protéines dans le noyau: les signaux de localisation nucléaire et leurs récepteurs. Médicine/Science 8: 134–139, 1992

    Google Scholar 

  26. Buki K, Kun E: Polypeptide domains of ADP-ribosyltransferase obtained by digestion with plasmin. Biochemistry, 27: 5990–5995, 1988

    PubMed  Google Scholar 

  27. Mazen A, Lamarre D, Poirier G, Gradwohl G, de Murcia, G: Localisation of the zinc-binding sites in the DNA-binding domain of the bovine poly(ADP-ribose) polymerase. In: ADP-ribose Transfer Reactions: Mechanisms and Biological significance (M.K. Jacobson and E.L. Jacobson, eds) Springer-Verlag, pp 89–93, 1989

  28. Auer B, Nagl U, Herzog H, Schneider R, Schweiger M: Human Nuclear NAD+ ADP-ribosyltransferase (polymerizing): organization of the gene. DNA 8: 575–580, 1989

    Google Scholar 

  29. Simonin F, Briand JP, Muller S, de Murcia G: Detection of poly(ADP-ribose) polymerase activity in crude extracts of higher and lower eukaryotes by activity-blot. Anal. Biochem. 195: 226–231, 1991

    PubMed  Google Scholar 

  30. Naegeli H, Althaus FR: Regulation of Poly(ADP-ribose) polymerase. Histone-speechified adaptations of reaction products. J. Biol. Chem. 266: 10956–10601, 1991

    Google Scholar 

  31. Baker PJ, Britton K L, Engel PC, Farrants GW, Lilley K S, Rice D W, Stillman TJ: Subunit assembly and active site location ion the structure of glutamate dehydrogenase. Proteins 12: 75–86, 1992

    PubMed  Google Scholar 

  32. Rossmann M G, Liljas A, Bränden C-I, Banaszak L.J.: Evolutionary and structural relationships among dehydrogenases. In: “The Enzymes,” 3rd ed. Vol. 11. (Boyer, P.D.) (ed.). New York: Academic Press: 61–102, 1975

    Google Scholar 

  33. Marsischky G. T., Ikejima, M, Suzuki H, Sugimura T, Esumi H, Miwa M, and Collier R J: Directed mutagenesis of glutamic acid 988 of poly(ADP-ribose) polymerase. In. ADP-ribosylation reactions. Poirier, G. G. and Moreau, P., eds. Springer, New York p47–52, 1992

    Google Scholar 

  34. Küpper J-H, de Murcia G, Burkle A: Inhibition of poly(ADP-ribosylation by overexpressing the Poly(ADP-ribose) polymerase DNA-binding domain. J. Biol. Chem. 265: 8721–18724, 1990

    Google Scholar 

  35. Satoh MS, Lindahl T: Role of poly(ADP-ribose) formation in DNA repair. Nature. 356: 356–358, 1992

    PubMed  Google Scholar 

  36. de Murcia G, Jongstra-Bilen J, Ittel ME, Mandel P, Delain E: Poly(ADP-ribose) polymerase — automodification and interaction with DNA: electron microscopic visualization. EMBO J, 2: 543–548, 1983

    PubMed  Google Scholar 

  37. Poirier G, de Murcia G, Jongstra-Bilen J, Niedergang C, Mandel, P: Poly ADP-ribosylation of polynucleosomes causes a relaxation of the chromatin structure. Proc. Natl. Acad. Sci. USA, 79: 3423–3426, 1982

    PubMed  Google Scholar 

  38. de Murcia G, Huletsky A, Lamarre D, Gaudreau A, Pouyet J, Daune M, Poirier G: Modulation of chromatic superstructure induced by poly(ADP-ribose) synthesis and degradation. J. Biol. Chem. 261: 7011–7017, 1987

    Google Scholar 

  39. Le Cam E, Fack F, Ménissier-deMurcia J, Cognet J, Barbin A, Sarantoglou V, Révet B, Delain E, de Murcia G: Conformational analysis of a 139 base-pairs DNA fragment containing a single-stranded break, and its interaction with human poly(ADP-ribose) polymerase. J. Mol. Biol. 235: 1062–1071, 1994

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

de Murcia, G., Schreiber, V., Molinete, M. et al. Structure and function of poly(ADP-ribose) polymerase. Mol Cell Biochem 138, 15–24 (1994). https://doi.org/10.1007/BF00928438

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00928438

Key words

Navigation