Skip to main content
Log in

Linkage disequilibrium between phenylketonuria and RFLP haplotype 1 at the phenylalanine hydroxylase locus in Portugal

  • Original Investigations
  • Published:
Human Genetics Aims and scope Submit manuscript

Summary

RFLPs of 36 normal and 41 mutant alleles at the phenylalanine hydroxylase locus were determined in 31 Portuguese kindreds. A total of 14 haplotypes including 10 normal and 7 mutant alleles were observed. Almost 75% of all mutant alleles were confined within only two haplotypes, namely haplotype 9 (17.1%) and haplotype 1 (56.1%). This frequency of mutant haplotype 1 in Portugal is, to our knowledge, the highest for this mutant haplotype in all studies reported to date. Other mutant haplotypes were either rare (haplotype 2, 9.7%) or totally absent (haplotype 3, 0%). Only 24.5% of all mutant alleles were found to consistently carry identified mutations, particularly R261Q (9.8%), R252W (3.3%), R408W (1.6%) and ΔI94 (3.3%). A new mutation, L249F, located in the seventh exon of the gene, accounted for 6.5% of all mutant alleles in our series. Interestingly, this mutant genotype was consistently associated with mutant haplotype 1 (P<0.01), as also observed for the R261Q mutation. It appears, therefore, that mutant haplotype 1 is genotypically heterogeneous in Portugal and that more than two mutations account for its prevalence in this country.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Abadie V, Lyonnet S, Maurin N, Berthelon M, Caillaud C, Giraud F, Mattei JF, Rey J, Rey F, Munnich A (1989) CpG dinucleotides are mutation hot spots in phenylketonuria. Genomics 5:936–939

    Google Scholar 

  • Apold J, Eiken HG, Odland E, Fredriksen A, Bakken A, Lorens JB, Boman H (1990) A termination mutation prevalent in Norwegian haplotype 7 phenylketonuria genes. Am J Hum Genet 47:1002–1007

    Google Scholar 

  • Aulehla-Scholz C, Vorgerd M, Sautter E, Leupold D, Mahlmann R, Ullrich K, Olek K, Horst J (1988) Phenylketonuria: distribution of DNA diagnostic patterns in German families. Hum Genet 78:353–355

    Google Scholar 

  • Berthelon M, Caillaud C, Rey F, Labrune P, Melle D, Feingold J, Frézal J, Briard ML, Farriaux JP, Guibaud P, Journel H, Le Marrec B, Maurin N, Nivelon JL, Plauchu H, Saudubray JM, Tron P, Rey J, Munnich A, Lyonnet S (1991) Spectrum of phenylketonuria mutations in western Europe and North Africa and their relation to polymorphic DNA haplotypes at the phenylalanine hydroxylase locus. Hum Genet 86:355–358

    Google Scholar 

  • Caillaud C, Lyonnet S, Rey F, Melle D, Frebourg T, Berthelon M, Vilarinho L, Vaz Osorio R, Rey J, Munnich A (1991) A 3-base pair in-frame deletion of the phenylalanine hydroxylase gene results in a kinetic variant of phenylketonuria. J Biol Chem 266:9351–9354

    Google Scholar 

  • Chakraborty R, Lidsky AS, Daiger SP, Guttler F, Sullivan S, DiLella AG, Woo SLC (1987) Polymorphic DNA haplotypes at the human phenylalanine hydroxylase locus and their relationship with phenylketonuria. Hum Genet 76:40–46

    Google Scholar 

  • Daiger SP, Chakraborty R, Reed L, Fekete G, Schuler D, Berenssi G, Nasz I, Brdicka R, Kamaryt J, Pijackova A, Moore S, Sullivan S, Woo SLC (1989) Polymorphic DNA haplotypes at the phenylalanine hydroxylase (PAH) locus in European families with phenylketonuria (PKU). Am J Hum Genet 45:310–318

    Google Scholar 

  • Dianzani I, Camaschella C, Saglio G, Ferrero GB, Romeo G, Devoto M, Romano C, Cerone R, Giovannini M, Riva E, Trefz FK, Lichter-Konecki U, Woo SLC (1990) Haplotype distribution and molecular defects of PKU in Italy. J Inher Metab Dis 13:292–294

    Google Scholar 

  • DiLella AG, Marvit J, Lidsky AS, Guttler F, Woo SLC (1986) Tight linkage between a splicing mutation and a specific DNA haplotype in phenylketonuria. Nature 322:799–803

    Google Scholar 

  • DiLella AG, Marvit J, Brayton K, Woo SLC (1987) An aminoacid substitution involved in phenylketonuria is in linkage disequilibrium with DNA haplotype 2. Nature 327:333–336

    Google Scholar 

  • Kwok SCM, Ledley FD, DiLella AG, Robson KJH, Woo SLC (1985) Nucleotide sequence of a full-length complementary DNA clone and amino-acid sequence of human phenylalanine hydroxylase. Biochemistry 24:556–561

    Google Scholar 

  • Lichter-Konecki U, Konecki DS, DiLella AG, Brayton K, Marvit J, Hahn TM, Trefz FK, Woo SLC (1988a) Phenylalanine hydroxylase deficiency caused by a single base substitution in an exon of the human phenylalanine hydroxylase gene. Biochemistry 27:2881–2885

    Google Scholar 

  • Lichter-Konecki U, Schlotter M, Konecki DS, Labeit S, Woo SLC, Trefz FK (1988b) Linkage disequilibrium between mutation and RFLP haplotype at the phenylalanine hydroxylase locus in the German population. Hum Genet 78:347–352

    Google Scholar 

  • Lichter-Konecki U, Schlotter M, Yaylak C, Özgüc M, Coskun T, Özalp I, Wendel U, Batzier U, Frefz FK, Konecki DS (1989) DNA haplotype analysis at the phenylalanine hydroxylase locus in the Turkish population. Hum Genet 81:373–376

    Google Scholar 

  • Lyonnet S, Caillaud C, Rey F, Berthelon M, Frézal J, Rey J, Munnich A (1989) Molecular basis of phenylketonuria in Mediterranean countries: a mutation associated with partial phenylalanine hydroxylase deficiency. Am J Hum Genet 40:511–517

    Google Scholar 

  • Okano Y, Wang T, Eisensmith RC, Steinmann B, Gitzelmann R, Woo SLC (1990) Missense mutations associated with RFLP haplotypes 1 and 4 of the human phenylalanine hydroxylase gene. Am J Hum Genet 46:18–25

    Google Scholar 

  • Rey F, Berthelon M, Caillaud C, Lyonnet S, Abadie V, Blandin-Savoja F, Feingold J, Saudubray JM, Frézal J, Munnich A, Rey J (1988) Clinical and molecular heterogeneity of phenylalanine hydroxylase deficiencies in France. Am J Hum Genet 43:914–921

    Google Scholar 

  • Riess O, Michel A, Speer A, Meiske W, Cobet G, Coutelle C (1988) Linkage disequilibrium between RFLP haplotype 2 and the affected PAH allele in PKU families from the Berlin area of the German Democratic Republic. Hum Genet 78:343–346

    Google Scholar 

  • Sullivan SE, Moore SD, Connor JM, King M, Cockburn F, Steinmann B, Gitzelmann R, Daiger SP, Woo SLC (1989) Haplotype distribution of the human phenylalanine hydroxylase locus in Scotland and Switzerland. Am J Hum Genet 44:652–659

    Google Scholar 

  • Svensson E, Döbeln U von, Hagenfeldt L (1991) Polymorphic DNA haplotypes at the phenylalanine hydroxylase locus and their relation to phenotvpe in Swedish phenylketonuria families. Hum Genet 87:11–17

    Google Scholar 

  • Woo SLC (1988) Collation of RFLP haplotypes at the human phenylalanine hydroxylase (PAH) locus. Am J Hum Genet 43:781–783

    Google Scholar 

  • Woo SLC, Lidsky AS, Guttler F, Chandra T, Robson KJH (1983) Cloned human phenylalanine hydroxylase gene allows prenatal diagnosis and carrier detection of classical phenylketonuria. Nature 306:151–155

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Caillaud, C., Vilarinho, L., Vilarinho, A. et al. Linkage disequilibrium between phenylketonuria and RFLP haplotype 1 at the phenylalanine hydroxylase locus in Portugal. Hum Genet 89, 69–72 (1992). https://doi.org/10.1007/BF00207045

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00207045

Keywords

Navigation