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Molecular Treasure Hunt

A software tool elicits previously undiscovered gene or protein pathways by combing through hundreds of thousands of journal articles


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When Andrey Rzhetsky arrived at Columbia University as a research scientist in 1996, the first project he collaborated on involved a literature search to try to understand why white blood cells called lymphocytes do not die in chronic lymphocytic leukemia. The mathematician-biologist found a few hundred articles on apoptosis (programmed cell death) and the cancer. Even if he had devoted every moment to the task, it would have been impossible to perform a comprehensive scan of everything that had reached the journals. Worse, "it was just the tip of the iceberg, not nearly enough to understand the whole process," he laments.

The experience led him to an idea that would have made his job on that first project much easier: an automated search tool that could supplant the mind-numbing task of finding and reading all the literature. But it also might do much more; it could even let a machine conduct research on its own, discovering the patterns among the data much as a human would do.

Gary Stix, the neuroscience and psychology editor for Scientific American, edits and reports on emerging advances that have propelled brain science to the forefront of the biological sciences. Stix has edited or written cover stories, feature articles and news on diverse topics, ranging from what happens in the brain when a person is immersed in thought to the impact of brain implant technology that alleviates mood disorders like depression. Before taking over the neuroscience beat, Stix, as Scientific American's special projects editor, oversaw the magazine's annual single-topic special issues, conceiving of and producing issues on Einstein, Darwin, climate change and nanotechnology. One special issue he edited on the topic of time in all of its manifestations won a National Magazine Award. Stix is the author with his wife Miriam Lacob of a technology primer called Who Gives a Gigabyte: A Survival Guide to the Technologically Perplexed.

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Scientific American Magazine Vol 292 Issue 5This article was originally published with the title “Molecular Treasure Hunt” in Scientific American Magazine Vol. 292 No. 5 ()