Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion

Science. 2000 Sep 1;289(5484):1546-50. doi: 10.1126/science.289.5484.1546.

Abstract

The atomic structures of two proteins in the histidine biosynthesis pathway consist of beta/alpha barrels with a twofold repeat pattern. It is likely that these proteins evolved by twofold gene duplication and gene fusion from a common half-barrel ancestor. These ancestral domains are not visible as independent domains in the extant proteins but can be inferred from a combination of sequence and structural analysis. The detection of subdomain structures may be useful in efforts to search genome sequences for functionally and structurally related proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldose-Ketose Isomerases / chemistry*
  • Aldose-Ketose Isomerases / genetics
  • Aldose-Ketose Isomerases / metabolism
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Aminohydrolases / chemistry*
  • Aminohydrolases / genetics
  • Aminohydrolases / metabolism
  • Binding Sites
  • Catalysis
  • Crystallography, X-Ray
  • Evolution, Molecular*
  • Gene Duplication*
  • Histidine / biosynthesis
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Folding
  • Protein Structure, Tertiary*
  • Recombination, Genetic*
  • Sequence Alignment
  • Thermotoga maritima / enzymology

Substances

  • Histidine
  • imidazole glycerol phosphate synthase
  • Aminohydrolases
  • Aldose-Ketose Isomerases
  • Phosphoribosyl-5-amino-1-phosphoribosyl-4-imidazolecarboxiamide isomerase

Associated data

  • PDB/1QO2
  • PDB/1THF