The 2023 MDPI Annual Report has
been released!
 
12 pages, 328 KiB  
Article
On the Integrability of Persistent Quadratic Three-Dimensional Systems
by Brigita Ferčec, Maja Žulj and Matej Mencinger
Mathematics 2024, 12(9), 1338; https://doi.org/10.3390/math12091338 (registering DOI) - 28 Apr 2024
Abstract
We consider a nine-parameter familiy of 3D quadratic systems, [...] Read more.
We consider a nine-parameter familiy of 3D quadratic systems, x˙=x+P2(x,y,z), y˙=y+Q2(x,y,z), z˙=z+R2(x,y,z), where P2,Q2,R2 are quadratic polynomials, in terms of integrability. We find necessary and sufficient conditions for the existence of two independent first integrals of corresponding semi-persistent, weakly persistent, and persistent systems. Unlike some of the earlier works, which primarily focus on planar systems, our research covers three-dimensional spaces, offering new insights into the complex dynamics that are not typically apparent in lower dimensions. Full article
14 pages, 1096 KiB  
Article
Ex Vivo Immune Function and Modulatory Effects of Calcitriol in Dogs with Naturally Occurring Diabetes Mellitus
by Jared A. Jaffey, Rachael Kreisler, Thomas K. Graves, Layla Al-Nakkash, Robert C. Backus and Lauren Allison
Vet. Sci. 2024, 11(5), 193; https://doi.org/10.3390/vetsci11050193 (registering DOI) - 28 Apr 2024
Abstract
Human patients with type 1 diabetes mellitus (T1DM) are susceptible to several long-term complications that are related to glycemic control and immune dysregulation. Immune function remains relatively unexplored in dogs with naturally occurring diabetes mellitus (NODM). Calcitriol improves various aspects of immune function [...] Read more.
Human patients with type 1 diabetes mellitus (T1DM) are susceptible to several long-term complications that are related to glycemic control and immune dysregulation. Immune function remains relatively unexplored in dogs with naturally occurring diabetes mellitus (NODM). Calcitriol improves various aspects of immune function in a variety of species, but its effect in diabetic dogs remains unexplored. Therefore, the objectives of this study were to (i) evaluate immune function in dogs with NODM and determine if differences exist based on the level of clinical control and (ii) assess the immunomodulatory effects of calcitriol. Twenty diabetic dogs (clinically controlled, n = ten, not controlled, n = ten) and 20 non-diabetic, healthy control dogs were included in this prospective, case–control study. Whole blood was incubated with calcitriol (10−7 M) or negative control, after which the samples were divided for phagocytosis and leukocyte cytokine response experiments. The phagocytosis of opsonized Escherichia coli (E. coli) was evaluated with flow cytometry. The samples for leukocyte cytokine response evaluations were stimulated with lipopolysaccharide (LPS), lipoteichoic acid (LTA), or phosphate buffer solution (PBS; negative control), and tumor necrosis factor (TNF)-α, interleukin (IL)-6, IL-8, and IL-10 were measured in supernatant using a canine-specific multiplex bead-based assay. The leukocytes from diabetic dogs produced higher concentrations of IL-10 (p = 0.01), IL-6 (p < 0.0001), and IL-8 (p < 0.0001) than the control dogs while controlling for the intervention and stimulant. Calcitriol decreased the supernatant concentrations of TNF-α (p < 0.001) and IL-8 (p = 0.04) with concomitant increases in IL-6 (p = 0.005). Diabetic dogs had a lower percentage of leukocytes undergoing phagocytosis (p < 0.0001) but a higher number of bacteria phagocytized per cell (p = 0.001) when compared to the control dogs. Calcitriol had no effect on phagocytic capacity. Lastly, the status of clinical control in diabetic dogs did not yield differences in immune function. These results support that dogs with NODM exhibit immune dysregulation and warrant additional investigation. Full article
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17 pages, 6830 KiB  
Article
Quantitative Proteomics Reveals the Relationship between Protein Changes and Volatile Flavor Formation in Hunan Bacon during Low-Temperature Smoking
by Huiyu Zou, Chuangye Deng, Junnian Li, Aihua Lou, Yan Liu, Jie Luo, Qingwu Shen and Wei Quan
Foods 2024, 13(9), 1360; https://doi.org/10.3390/foods13091360 (registering DOI) - 28 Apr 2024
Abstract
This study aimed to investigate the changes in proteins and volatile flavor compounds that occur in bacon during low-temperature smoking (LTS) and identify potential correlations between these changes. To achieve this, a combination of gas chromatography-mass spectrometry and proteomics was employed. A total [...] Read more.
This study aimed to investigate the changes in proteins and volatile flavor compounds that occur in bacon during low-temperature smoking (LTS) and identify potential correlations between these changes. To achieve this, a combination of gas chromatography-mass spectrometry and proteomics was employed. A total of 42 volatile flavor compounds were identified in the bacon samples, and, during LTS, 11 key volatile flavor compounds with variable importance were found at a projection value of >1, including 2′,4′-dihydroxyacetophenone, 4-methyl-2H-furan-5-one, Nonanal, etc. In total, 2017 proteins were quantified at different stages of LTS; correlation coefficients and KEGG analyses identified 27 down-regulated flavor-related proteins. Of these, seven were involved in the tricarboxylic acid (TCA) cycle, metabolic pathways, or amino acid metabolism, and they may be associated with the process of flavor formation. Furthermore, correlation coefficient analysis indicated that certain chemical parameters, such as the contents of free amino acids, carbonyl compounds, and TCA cycle components, were closely and positively correlated with the formation of key volatile flavor compounds. Combined with bioinformatic analysis, the results of this study provide insights into the proteins present in bacon at various stages of LTS. This study demonstrates the changes in proteins and the formation of volatile flavor compounds in bacon during LTS, along with their potential correlations, providing a theoretical basis for the development of green processing methods for Hunan bacon. Full article
(This article belongs to the Special Issue Flavor Formation and Quality Maintenance in Meat Processing)
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12 pages, 3262 KiB  
Article
Effect of Heat Treatment Combined with TG Enzyme Cross-Linking on the Zein–Pea Protein Complex: Physicochemical and Gel Properties
by Yan Li, Chi Wang, Nannan Hu, Yuanhui Zhao, Yuzhu Wu, Jingsheng Liu and Yilin Zhao
Gels 2024, 10(5), 301; https://doi.org/10.3390/gels10050301 (registering DOI) - 28 Apr 2024
Abstract
Plant proteins have the advantages of low cost and high yield, but they are still not comparable to animal proteins in processing due to factors such as gelation and solubility. How to enhance the processing performance of plant proteins by simple and green [...] Read more.
Plant proteins have the advantages of low cost and high yield, but they are still not comparable to animal proteins in processing due to factors such as gelation and solubility. How to enhance the processing performance of plant proteins by simple and green modification means has become a hot research topic nowadays. Based on the above problems, we studied the effect of gel induction on its properties. In this study, a pea protein–zein complex was prepared by the pH cycle method, and the effects of different induced gel methods on the gel properties of the complex protein were studied. The conclusions are as follows: All three gel induction methods can make the complex protein form a gel system, among which the gel strength of heat treatment and the TG enzyme-inducted group is the highest (372.84 g). Through the observation of the gel microstructure, the gel double network structure disappears and the structure becomes denser, which leads to a stronger water-binding state of the gel sample in the collaborative treatment group. In the simulated digestion experiment, heat treatment and enzyme-induced samples showed the best slow-release effect. This study provides a new method for the preparation of multi-vegetable protein gels and lays a theoretical foundation for their application in food processing. Full article
(This article belongs to the Special Issue Food Gels: Structure and Properties)
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11 pages, 2503 KiB  
Article
Direct Degradation of Fresh and Dried Macroalgae by Agarivorans albus B2Z047
by Ya Gong, Dan-Dan Shang, Cheng-Lin Sun, Zong-Jun Du and Guan-Jun Chen
Mar. Drugs 2024, 22(5), 203; https://doi.org/10.3390/md22050203 (registering DOI) - 28 Apr 2024
Abstract
Marine macroalgae are increasingly recognized for their significant biological and economic potential. The key to unlocking this potential lies in the efficient degradation of all carbohydrates from the macroalgae biomass. However, a variety of polysaccharides (alginate, cellulose, fucoidan, and laminarin), are difficult to [...] Read more.
Marine macroalgae are increasingly recognized for their significant biological and economic potential. The key to unlocking this potential lies in the efficient degradation of all carbohydrates from the macroalgae biomass. However, a variety of polysaccharides (alginate, cellulose, fucoidan, and laminarin), are difficult to degrade simultaneously in a short time. In this study, the brown alga Saccharina japonica was found to be rapidly and thoroughly degraded by the marine bacterium Agarivorans albus B2Z047. This strain harbors a broad spectrum of carbohydrate-active enzymes capable of degrading various polysaccharides, making it uniquely equipped to efficiently break down both fresh and dried kelp, achieving a hydrolysis rate of up to 52%. A transcriptomic analysis elucidated the presence of pivotal enzyme genes implicated in the degradation pathways of alginate, cellulose, fucoidan, and laminarin. This discovery highlights the bacterium’s capability for the efficient and comprehensive conversion of kelp biomass, indicating its significant potential in biotechnological applications for macroalgae resource utilization. Full article
(This article belongs to the Special Issue Marine Glycomics 2nd Edition)
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15 pages, 2401 KiB  
Article
Aquatic Bacterial Community Connectivity: The Effect of Hydrological Flow on Community Diversity and Composition
by Javad Sadeghi, Clare J. Venney, Shelby Wright, James Watkins, Dana Manning, Edel Bai, Chelsea Frank and Daniel D. Heath
Environments 2024, 11(5), 90; https://doi.org/10.3390/environments11050090 (registering DOI) - 28 Apr 2024
Abstract
Microbial communities are vital components of freshwater ecosystems due to their role in nutrient cycling and energy flow; however, the mechanisms driving their variation are still being explored. In aquatic systems, water flow (hydrology) can impact microbial community composition through community connectivity; however, [...] Read more.
Microbial communities are vital components of freshwater ecosystems due to their role in nutrient cycling and energy flow; however, the mechanisms driving their variation are still being explored. In aquatic systems, water flow (hydrology) can impact microbial community composition through community connectivity; however, the details of hydrology’s effects on microbial connectivity remain unclear. To address this question, we used 16S rRNA metabarcoding to determine bacterial community composition and connectivity across flow transects in three connected Great Lakes waterbodies with very different water-flow regimes: the Little River (high flow), the Detroit River (moderate flow), and Lake Erie (low flow). Bacterial alpha diversity (Chao1) did not differ among the three locations or sample sites along the transects. Analyses of beta diversity using community dissimilarity matrices identified significant differences among the three locations and among sample sites within locations. Bacterial community connectivity varied among the three locations, with a significant distance–decay relationship observed only in the low-flow location, which is indicative of connectivity driven by spatial proximity. Directional analyses showed that the water-flow direction affected bacterial similarity, consistent with the expected hydrological effects on community connectivity and previous published work. Our results indicate that (1) microbial community composition varies within and among even geographically close sampling locations and (2) the specific water-flow regime appears to affect bacterial community connectivity. Including hydrology in models of bacterial community composition will improve our understanding of the relative roles of selection versus stochastic effects on bacterial community diversity and composition in freshwater ecosystems. Full article
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20 pages, 578 KiB  
Article
Impact of Ship Noise on Seafarers’ Sleep Disturbances and Daily Activities: An Analysis of Fatigue Increase and Maritime Accident Risk through a Survey
by Seok-Jin Kim, Tae-Youl Jeon and Young-Chan Lee
Appl. Sci. 2024, 14(9), 3757; https://doi.org/10.3390/app14093757 (registering DOI) - 28 Apr 2024
Abstract
This study delves into the impact of ship noise on seafarer well-being, emphasizing fatigue—a significant contributor to maritime accidents due to human error. The investigation, centered around the hypothesis that IMO ship construction standards may not adequately minimize noise levels in seafarer cabins, [...] Read more.
This study delves into the impact of ship noise on seafarer well-being, emphasizing fatigue—a significant contributor to maritime accidents due to human error. The investigation, centered around the hypothesis that IMO ship construction standards may not adequately minimize noise levels in seafarer cabins, seeks to establish whether these levels are sufficient to ensure seafarer security and prevent sleep disturbances. According to current IMO regulations, noise levels are set at 55 dB for vessels under 10,000 gross tonnage and 60 dB for those over 10,000, yet WHO guidelines recommend a maximum of 40 dB in bedrooms to avoid sleep disruption. A comprehensive survey involving 221 cadets demonstrates that 79.6% of participants experience sleep disturbances, work disruptions, and stress due to noise, indicating that the present noise standards are insufficient. This paper argues that reducing noise levels in individual cabins to below 40 dB is critical for enhancing seafarer health and safety and could significantly reduce human error-related maritime accidents. The findings advocate for more stringent noise control measures and regulatory reforms to bridge the knowledge gaps and improve labor protection in the maritime industry. Full article
(This article belongs to the Special Issue Traffic Noise and Vibrations in Public Transportation Systems)
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14 pages, 3076 KiB  
Review
Ex Vivo-Generated Tolerogenic Dendritic Cells: Hope for a Definitive Therapy of Autoimmune Diseases
by Jonny, Enda Cindylosa Sitepu, Chairul A. Nidom, Soetojo Wirjopranoto, I. Ketut Sudiana, Arif N. M. Ansori and Terawan Agus Putranto
Curr. Issues Mol. Biol. 2024, 46(5), 4035-4048; https://doi.org/10.3390/cimb46050249 (registering DOI) - 28 Apr 2024
Abstract
Current therapies for autoimmune diseases are immunosuppressant agents, which have many debilitating side effects. However, dendritic cells (DCs) can induce antigen-specific tolerance. Tolerance restoration mediated by ex vivo-generated DCs can be a therapeutic approach. Therefore, in this review, we summarize the conceptual framework [...] Read more.
Current therapies for autoimmune diseases are immunosuppressant agents, which have many debilitating side effects. However, dendritic cells (DCs) can induce antigen-specific tolerance. Tolerance restoration mediated by ex vivo-generated DCs can be a therapeutic approach. Therefore, in this review, we summarize the conceptual framework for developing ex vivo-generated DC strategies for autoimmune diseases. First, we will discuss the role of DCs in developing immune tolerance as a foundation for developing dendritic cell-based immunotherapy for autoimmune diseases. Then, we also discuss relevant findings from pre-clinical and clinical studies of ex vivo-generated DCs for therapy of autoimmune diseases. Finally, we discuss problems and challenges in dendritic cell therapy in autoimmune diseases. Throughout the article, we discuss autoimmune diseases, emphasizing SLE. Full article
(This article belongs to the Collection Molecular Mechanisms in Human Diseases)
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17 pages, 2446 KiB  
Article
The Influence of Stress and Binge-Patterned Alcohol Drinking on Mouse Skeletal Muscle Protein Synthesis and Degradation Pathways
by Carter H Reed, Anna C. Tystahl, Hyeyoon Eo, Trevor J. Buhr, Ella E. Bauer, Ji Heun Lee, Peter J. Clark and Rudy J. Valentine
Biomolecules 2024, 14(5), 527; https://doi.org/10.3390/biom14050527 (registering DOI) - 28 Apr 2024
Abstract
Adverse experiences (e.g., acute stress) and alcohol misuse can both impair skeletal muscle homeostasis, resulting in reduced protein synthesis and greater protein breakdown. Exposure to acute stress is a significant risk factor for engaging in alcohol misuse. However, little is known about how [...] Read more.
Adverse experiences (e.g., acute stress) and alcohol misuse can both impair skeletal muscle homeostasis, resulting in reduced protein synthesis and greater protein breakdown. Exposure to acute stress is a significant risk factor for engaging in alcohol misuse. However, little is known about how these factors together might further affect skeletal muscle health. To that end, this study investigated the effects of acute stress exposure followed by a period of binge-patterned alcohol drinking on signaling factors along mouse skeletal muscle protein synthesis (MPS) and degradation (MPD) pathways. Young adult male C57BL/6J mice participated in the Drinking in the Dark paradigm, where they received 2–4 h of access to 20% ethanol (alcohol group) or water (control group) for four days to establish baseline drinking levels. Three days later, half of the mice in each group were either exposed to a single episode of uncontrollable tail shocks (acute stress) or remained undisturbed in their home cages (no stress). Three days after stress exposure, mice received 4 h of access to 20% ethanol (alcohol) to model binge-patterned alcohol drinking or water for ten consecutive days. Immediately following the final episode of alcohol access, mouse gastrocnemius muscle was extracted to measure changes in relative protein levels along the Akt-mTOR MPS, as well as the ubiquitin-proteasome pathway (UPP) and autophagy MPD pathways via Western blotting. A single exposure to acute stress impaired Akt singling and reduced rates of MPS, independent of alcohol access. This observation was concurrent with a potent increase in heat shock protein seventy expression in the muscle of stressed mice. Alcohol drinking did not exacerbate stress-induced alterations in the MPS and MPD signaling pathways. Instead, changes in the MPS and MPD signaling factors due to alcohol access were primarily observed in non-stressed mice. Taken together, these data suggest that exposure to a stressor of sufficient intensity may cause prolonged disruptions to signaling factors that impact skeletal muscle health and function beyond what could be further induced by periods of alcohol misuse. Full article
(This article belongs to the Special Issue Skeletal Muscle Homeostasis and Regeneration)
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16 pages, 5765 KiB  
Article
El Niño–Southern Oscillation-Independent Regulation of Western North Pacific Tropical Cyclone Genesis
by Danlei Jian, Haikun Zhao, Min Liu and Ronghe Wang
Atmosphere 2024, 15(5), 537; https://doi.org/10.3390/atmos15050537 (registering DOI) - 28 Apr 2024
Abstract
As the most significant interannual signal in the tropical Pacific, the influence of ENSO on the interannual variability in TC genesis location in the western North Pacific (WNP) has received much attention in previous studies. This paper mainly emphasizes the underlying SST factors [...] Read more.
As the most significant interannual signal in the tropical Pacific, the influence of ENSO on the interannual variability in TC genesis location in the western North Pacific (WNP) has received much attention in previous studies. This paper mainly emphasizes the underlying SST factors independent of the ENSO signal and explores how they modulate interannual tropical cyclone genesis (TCG) latitude variability. Our study finds that the meridional sea temperature gradient (SSTG) between the Kuroshio Extension and the WNP still has a significant effect on the interannual variability in the TCG latitude after removing the effect of ENSO (r = 0.6). The interannual forecasts of the TCG latitude were effectively improved from 0.67 to 0.81 when the ENSO-independent SSTG and ENSO were regressed together in a multi-linear regression. We then propose an ENSO-independent physical mechanism affecting the TCG latitude. The equatorward (poleward) SSTG excited the positive (negative) Pacific–Japan telecorrelation pattern over the WNP, forming Rossby wave trains and propagating northward. A significant cyclonic vortex (anticyclonic vortex) with strong convective development (suppression) developed near 20° N, leading more TCs to the northern (southern) part of the WNP. These findings provide a new perspective for the prediction of the interannual variability in the TCG latitude. Full article
(This article belongs to the Special Issue Tropical Cyclones: Observations and Prediction)
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14 pages, 1453 KiB  
Article
Effects of Two Different Methods of Teeth Grinding on Dental Injuries, Skin Lesions, Growth and Behaviour of Suckling Piglets Compared to a Non-Treated Control Group
by Carolin Bernarda Timphaus, Franziska Anna kleine Kruthaup, Fritjof Freise, Swetlana Herbrandt, Elisabeth große Beilage and Michaela Fels
Animals 2024, 14(9), 1318; https://doi.org/10.3390/ani14091318 (registering DOI) - 28 Apr 2024
Abstract
Teeth grinding in suckling piglets is performed on many farms to protect the piglets’ littermates and the sow’s udder from injuries caused by the piglets’ canines and third incisors. In this study, the effects of two teeth-grinding methods on the piglets’ dental health [...] Read more.
Teeth grinding in suckling piglets is performed on many farms to protect the piglets’ littermates and the sow’s udder from injuries caused by the piglets’ canines and third incisors. In this study, the effects of two teeth-grinding methods on the piglets’ dental health and welfare were investigated. The piglets of a litter were evenly assigned to a treatment: one-third of littermates were ground with a roller grinding head (RG), one-third with a teacup grinding head (TCG), and one-third were not ground at all (CG). A random sample of 100 animals each from the RG and TCG treatment was examined for tooth injuries, i.e., dental pulp openings. Additionally, behavioural analysis was performed (n = 650 piglets), and skin lesions, growth and mortality were determined (n = 1565 piglets). TCG piglets had a lower risk (p < 0.001) of pulp opening than RG piglets (0.08 ± 0.31 vs. 2.67 ± 1.67 opened pulps per piglet). Mortality, growth, skin lesions and behaviour of piglets were not influenced by treatment (p > 0.05). This study showed that both teeth-grinding methods led to pulp openings. If teeth grinding cannot be avoided on a farm, using the teacup grinding head is recommended concerning animal health and welfare. Full article
(This article belongs to the Collection Behaviour of Pigs in Relation to Housing Environment)
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16 pages, 4078 KiB  
Article
Naringin Inhibits Macrophage Foam Cell Formation by Regulating Lipid Homeostasis and Metabolic Phenotype
by Yan Liu, Xiaohan Tang, Hailong Yuan and Rong Gao
Nutrients 2024, 16(9), 1321; https://doi.org/10.3390/nu16091321 (registering DOI) - 28 Apr 2024
Abstract
Imbalances in lipid uptake and efflux and inflammation are major contributors to foam cell formation, which is considered a therapeutic target to protect against atherosclerosis. Naringin, a citrus flavonoid abundant in citrus fruits, has been reported to exert an antiatherogenic function, but its [...] Read more.
Imbalances in lipid uptake and efflux and inflammation are major contributors to foam cell formation, which is considered a therapeutic target to protect against atherosclerosis. Naringin, a citrus flavonoid abundant in citrus fruits, has been reported to exert an antiatherogenic function, but its pharmacological mechanism is unclear. Naringin treatment effectively inhibits foam cell formation in THP-1 and RAW264.7 macrophages. In this study, mechanically, naringin maintained lipid homeostasis within macrophages through downregulation of the key genes for lipid uptake (MSR1 and CD36) and the upregulation of ABCA1, ABCG1 and SR-B1, which are responsible for cholesterol efflux. Meanwhile, naringin significantly decreased the cholesterol synthesis-related genes and increased the genes involved in cholesterol metabolism. Subsequently, the results showed that ox-LDL-induced macrophage inflammatory responses were inhibited by naringin by reducing the proinflammatory cytokines IL-1β, IL-6 and TNF-α, and increasing the anti- inflammatory cytokine IL-10, which was further verified by the downregulation of pro-inflammatory and chemokine-related genes. Additionally, we found that naringin reprogrammed the metabolic phenotypes of macrophages by suppressing glycolysis and promoting lipid oxidation metabolism to restore macrophage phenotypes and functions. These results suggest that naringin is a potential drug for the treatment of AS as it inhibits macrophage foam cell formation by regulating metabolic phenotypes and inflammation. Full article
(This article belongs to the Section Phytochemicals and Human Health)
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12 pages, 1517 KiB  
Article
DNA Quantity and Quality Comparisons between Cryopreserved and FFPE Tumors from Matched Pan-Cancer Samples
by Jeffrey Okojie, Nikole O’Neal, Mackenzie Burr, Peyton Worley, Isaac Packer, DeLaney Anderson, Jack Davis, Bridger Kearns, Kaniz Fatema, Ken Dixon and Jared J. Barrott
Curr. Oncol. 2024, 31(5), 2441-2452; https://doi.org/10.3390/curroncol31050183 (registering DOI) - 28 Apr 2024
Abstract
Personalized cancer care requires molecular characterization of neoplasms. While the research community accepts frozen tissues as the gold standard analyte for molecular assays, the source of tissue for testing in clinical cancer care comes almost universally from formalin-fixed, paraffin-embedded tissue (FFPE). As newer [...] Read more.
Personalized cancer care requires molecular characterization of neoplasms. While the research community accepts frozen tissues as the gold standard analyte for molecular assays, the source of tissue for testing in clinical cancer care comes almost universally from formalin-fixed, paraffin-embedded tissue (FFPE). As newer technologies emerge for DNA characterization that requires higher molecular weight DNA, it was necessary to compare the quality of DNA in terms of DNA length between FFPE and cryopreserved samples. We hypothesized that cryopreserved samples would yield higher quantity and superior quality DNA compared to FFPE samples. We analyzed DNA metrics by performing a head-to-head comparison between FFPE and cryopreserved samples from 38 human tumors representing various cancer types. DNA quantity and purity were measured by UV spectrophotometry, and DNA from cryopreserved tissue demonstrated a 4.2-fold increase in DNA yield per mg of tissue (p-value < 0.001). DNA quality was measured on a fragment microelectrophoresis analyzer, and again, DNA from cryopreserved tissue demonstrated a 223% increase in the DNA quality number and a 9-fold increase in DNA fragments > 40,000 bp (p-value < 0.0001). DNA from the cryopreserved tissues was superior to the DNA from FFPE samples in terms of DNA yield and quality. Full article
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14 pages, 3758 KiB  
Article
Deep Learning Reconstruction for DWIs by EPI and FASE Sequences for Head and Neck Tumors
by Hirotaka Ikeda, Yoshiharu Ohno, Kaori Yamamoto, Kazuhiro Murayama, Masato Ikedo, Masao Yui, Yunosuke Kumazawa, Yurika Shimamura, Yui Takagi, Yuhei Nakagaki, Satomu Hanamatsu, Yuki Obama, Takahiro Ueda, Hiroyuki Nagata, Yoshiyuki Ozawa, Akiyoshi Iwase and Hiroshi Toyama
Cancers 2024, 16(9), 1714; https://doi.org/10.3390/cancers16091714 (registering DOI) - 28 Apr 2024
Abstract
Background: Diffusion-weighted images (DWI) obtained by echo-planar imaging (EPI) are frequently degraded by susceptibility artifacts. It has been suggested that DWI obtained by fast advanced spin-echo (FASE) or reconstructed with deep learning reconstruction (DLR) could be useful for image quality improvements. The purpose [...] Read more.
Background: Diffusion-weighted images (DWI) obtained by echo-planar imaging (EPI) are frequently degraded by susceptibility artifacts. It has been suggested that DWI obtained by fast advanced spin-echo (FASE) or reconstructed with deep learning reconstruction (DLR) could be useful for image quality improvements. The purpose of this investigation using in vitro and in vivo studies was to determine the influence of sequence difference and of DLR for DWI on image quality, apparent diffusion coefficient (ADC) evaluation, and differentiation of malignant from benign head and neck tumors. Methods: For the in vitro study, a DWI phantom was scanned by FASE and EPI sequences and reconstructed with and without DLR. Each ADC within the phantom for each DWI was then assessed and correlated for each measured ADC and standard value by Spearman’s rank correlation analysis. For the in vivo study, DWIs obtained by EPI and FASE sequences were also obtained for head and neck tumor patients. Signal-to-noise ratio (SNR) and ADC were then determined based on ROI measurements, while SNR of tumors and ADC were compared between all DWI data sets by means of Tukey’s Honest Significant Difference test. Results: For the in vitro study, all correlations between measured ADC and standard reference were significant and excellent (0.92 ≤ ρ ≤ 0.99, p < 0.0001). For the in vivo study, the SNR of FASE with DLR was significantly higher than that of FASE without DLR (p = 0.02), while ADC values for benign and malignant tumors showed significant differences between each sequence with and without DLR (p < 0.05). Conclusion: In comparison with EPI sequence, FASE sequence and DLR can improve image quality and distortion of DWIs without significantly influencing ADC measurements or differentiation capability of malignant from benign head and neck tumors. Full article
(This article belongs to the Section Cancer Informatics and Big Data)
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12 pages, 1988 KiB  
Article
The Clinical Efficacy of Different Relaxation Exercises on Intraocular Pressure Reduction: A Meta-Analysis
by Bing-Qi Wu, Hou-Ting Kuo, Alan Y. Hsu, Chun-Ju Lin, Chun-Ting Lai and Yi-Yu Tsai
J. Clin. Med. 2024, 13(9), 2591; https://doi.org/10.3390/jcm13092591 (registering DOI) - 28 Apr 2024
Abstract
Objective: The aim of this study was to synthesize the available evidence on the clinical efficacy of different relaxation exercises on intraocular pressure (IOP) reduction. Methods: A systemic search of PubMed, Embase, Cochrane CENTRAL, and Web of Science was undertaken from [...] Read more.
Objective: The aim of this study was to synthesize the available evidence on the clinical efficacy of different relaxation exercises on intraocular pressure (IOP) reduction. Methods: A systemic search of PubMed, Embase, Cochrane CENTRAL, and Web of Science was undertaken from the earliest record to 10 April 2024. Peer-reviewed studies that reported on healthy individuals and glaucoma patients engaging in relaxation exercises for at least three weeks were included. The primary outcome was changes in IOP levels from baseline, before the commencement of relaxation exercises, to post-exercise. Our statistical analysis employed a random-effects model, with effect sizes reported using Hedges’ g. Results: Twelve studies were included, totaling 764 eyes (mean participant age ranging from 21.07 to 69.50 years). Relaxation exercises significantly reduced IOP, with Hedges’ g being −1.276 (95% CI: −1.674 to −0.879) and I2 = 84.4%. Separate subgroup analyses showed that breathing exercises (Hedges’ g = −0.860, p < 0.0001), mindfulness-based stress reduction (MBSR) (Hedges’ g = −1.79, p < 0.0001), and ocular exercises (Hedges’ g = −0.974, p < 0.0001) were associated with reduced IOP levels. The reduction in IOP following the relaxation exercises was found to be associated with baseline IOP either greater than (Hedges’ g = −1.473, p < 0.0001) or less than 21 mmHg (Hedges’ g = −1.22, p < 0.0001). Furthermore, this effect persisted with follow-up durations of less than (Hedges’ g = −1.161, p < 0.0001) and more than one month (Hedges’ g = −1.324, p < 0.0001). Conclusions: The current meta-analysis indicates that relaxation exercises can significantly reduce IOP levels. Relaxation exercises are a potential class of novel treatments for glaucoma patients that deserve further evaluation. Full article
(This article belongs to the Special Issue Diagnosis, Treatment, and Prevention of Glaucoma: Second Edition)
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17 pages, 3857 KiB  
Article
Subsidy-Dominated Non-Farm Income Improves Herder Household Livelihoods and Promotes Income Equality in North Tibet, China
by Yu Zhang, Ben Niu and Xianzhou Zhang
Sustainability 2024, 16(9), 3681; https://doi.org/10.3390/su16093681 (registering DOI) - 28 Apr 2024
Abstract
The non-farm sector is critical in supporting sustainable economies, alleviating poverty, and improving human well-being. However, the drivers of non-farm income and how it impacts income inequality remain underexplored, especially in alpine regions worldwide. Herein, we conducted face-to-face interviews using semi-structured questionnaires with [...] Read more.
The non-farm sector is critical in supporting sustainable economies, alleviating poverty, and improving human well-being. However, the drivers of non-farm income and how it impacts income inequality remain underexplored, especially in alpine regions worldwide. Herein, we conducted face-to-face interviews using semi-structured questionnaires with 665 herder households across 54 villages in North Tibet from 2018 to 2020. We assessed the role of non-farm income in household economies and explored the determinants of household income using basic statistical methods, Gini coefficient analysis, and mixed-effects modeling. Our results showed that non-farm income accounted for approximately 80% of the total household income. It contributed to lower income inequality in rural North Tibet, with government subsidies playing a more vital role than wages and business income in this reduction. Results indicated that the number of migrant workers was the most significant positive predictor of both non-farm income and total household income, whereas livestock units dominated farm income. Given the modest contributions of livestock-derived income (~5%) and wage and business revenues (~18%) to overall earnings, this study suggests that policies should primarily focus on strengthening rural livestock husbandry. Simultaneously, it is imperative to foster environments that encourage entrepreneurship and non-farm activities and to expand access to skill-based training. Such initiatives and measures are essential for diversifying livelihood strategies and improving resident welfare in North Tibet. Full article
(This article belongs to the Section Sustainable Urban and Rural Development)
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17 pages, 2266 KiB  
Article
CNN-Based Pattern Classifiers for Precise Identification of Perinatal EEG Biomarkers of Brain Injury in Preterm Neonates
by Hamid Abbasi, Malcolm R. Battin, Deborah Rowe, Robyn Butler, Alistair J. Gunn and Laura Bennet
Signals 2024, 5(2), 264-280; https://doi.org/10.3390/signals5020014 (registering DOI) - 28 Apr 2024
Abstract
Electroencephalographic (EEG) monitoring is important for the diagnosis of hypoxic-ischemic (HI) brain injury in high-risk preterm infants. EEG monitoring is limited by the reliance on expert clinical observation. However, high-risk preterm infants often do not present observable symptoms due to their frailty. Thus, [...] Read more.
Electroencephalographic (EEG) monitoring is important for the diagnosis of hypoxic-ischemic (HI) brain injury in high-risk preterm infants. EEG monitoring is limited by the reliance on expert clinical observation. However, high-risk preterm infants often do not present observable symptoms due to their frailty. Thus, there is an urgent need to find better ways to automatically quantify changes in the EEG these high-risk babies. This article is a first step towards this goal. This innovative study demonstrates the effectiveness of deep Convolutional Neural Networks (CNN) pattern classifiers, trained on spectrally-detailed Wavelet Scalograms (WS) images derived from neonatal EEG sharp waves—a potential translational HI biomarker, at birth. The WS-CNN classifiers exhibit outstanding performance in identifying HI sharp waves within an exclusive clinical EEG recordings dataset of preterm infants immediately after birth. The work has impact as it demonstrates exceptional high accuracy of 99.34 ± 0.51% cross-validated across 13,624 EEG patterns over 48 h raw EEG at low 256 Hz clinical sampling rates. Furthermore, the WS-CNN pattern classifier is able to accurately identify the sharp-waves within the most critical first hours of birth (n = 8, 4:36 ± 1:09 h), regardless of potential morphological changes influenced by different treatments/drugs or the evolutionary ‘timing effects’ of the injury. This underscores its reliability as a tool for the identification and quantification of clinical EEG sharp-wave biomarkers at bedside. Full article
(This article belongs to the Special Issue Advancing Signal Processing and Analytics of EEG Signals)
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14 pages, 2407 KiB  
Article
Selective Removal of Hemicellulose by Diluted Sulfuric Acid Assisted by Aluminum Sulfate
by Huabin Jiang, Jiaqi Nie, Lei Zeng, Fei Zhu, Zhongwang Gao, Aiping Zhang, Jun Xie and Yong Chen
Molecules 2024, 29(9), 2027; https://doi.org/10.3390/molecules29092027 (registering DOI) - 28 Apr 2024
Abstract
Hemicellulose can be selectively removed by acid pretreatment. In this study, selective removal of hemicellulose was achieved using dilute sulfuric acid assisted by aluminum sulfate pretreatment. The optimal pretreatment conditions were 160 °C, 1.5 wt% aluminum sulfate, 0.7 wt% dilute sulfuric acid, and [...] Read more.
Hemicellulose can be selectively removed by acid pretreatment. In this study, selective removal of hemicellulose was achieved using dilute sulfuric acid assisted by aluminum sulfate pretreatment. The optimal pretreatment conditions were 160 °C, 1.5 wt% aluminum sulfate, 0.7 wt% dilute sulfuric acid, and 40 min. A component analysis showed that the removal rate of hemicellulose and lignin reached 98.05% and 9.01%, respectively, which indicated that hemicellulose was removed with high selectivity by dilute sulfuric acid assisted by aluminum sulfate pretreatment. Structural characterizations (SEM, FTIR, BET, TGA, and XRD) showed that pretreatment changed the roughness, crystallinity, pore size, and functional groups of corn straw, which was beneficial to improve the efficiency of enzymatic hydrolysis. This study provides a new approach for the high-selectivity separation of hemicellulose, thereby offering novel insights for its subsequent high-value utilization. Full article
(This article belongs to the Special Issue Biotechnological Applications of Proteins)
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15 pages, 4740 KiB  
Article
Dynamics of Carbon and Water Fluxes over Cropland and Agroforest Ecosystems on the Southern Chinese Loess Plateau
by Xiaoyang Han, Fengru Fang, Chenyun Bai, Kang Du, Yuanjun Zhu and Wenzhao Liu
Forests 2024, 15(5), 774; https://doi.org/10.3390/f15050774 (registering DOI) - 28 Apr 2024
Abstract
Studies on the spatiotemporal dynamics in ecosystem carbon and water exchanges are essential in predicting the effects of climate change on regional carbon and energy budgets. Using the eddy covariance technique, carbon and water fluxes were observed in a typical winter wheat ecosystem [...] Read more.
Studies on the spatiotemporal dynamics in ecosystem carbon and water exchanges are essential in predicting the effects of climate change on regional carbon and energy budgets. Using the eddy covariance technique, carbon and water fluxes were observed in a typical winter wheat ecosystem (WWE) and an agroforest ecosystem (AFE) in the southern Loess Plateau from 2004 to 2010. The seasonal and inter-annual variability in gross primary productivity (GPP), net ecosystem exchange (NEE), evapotranspiration (ET), and water use efficiency (WUE) were examined and the main influencing factors were identified using the Pearson correlation. The results indicate that the seasonal GPP and NEE showed a bimodal distribution in WWE, while this was unimodal in AFE. The sinusoidal function did well in the characterization of seasonal ET dynamics for both ecosystems, with the determination coefficients being 0.85 and 0.94, respectively. In WWE and AFE, the annual mean GPP were 724.33 and 723.08 g C m−2 a−1, respectively, and the corresponding ET were 392.22 and 410.02 mm a−1. However, the difference in NEE between the two ecosystems was obvious, NEE were −446.28 and −549.08 g C m−2 a−1, respectively, showing a stronger carbon sink in AFE. There were strong coupling relationships between the GPP and ET of both ecosystems; the overall slopes were 1.71 and 1.69, respectively. The seasonal trend of WUE was bimodal in WWE, with peak values of 3.94 and 3.65 g C kg−1 H2O, occurring in November and April, respectively. However, the monthly WUE in AFE had one single peak of 4.07 g C kg−1 H2O in January. Photosynthetically active radiation (PAR) and soil temperature (Ts) were most positively correlated with GPP, net radiation (Rn) and Ts were the major factors influencing ET, while vapor pressure deficit (VPD) and soil water content (SWC) were the major influencing factors for WUE. These results provide observational support for regional carbon neutrality simulations. Full article
(This article belongs to the Special Issue Soil Carbon in Forest Ecosystems)
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10 pages, 457 KiB  
Article
Hematocrit Predicts Poor Prognosis in Patients with Acute Ischemic Stroke or Transient Ischemic Attack
by Lingyun Cui, Yefang Feng, Ping Lu, Anxin Wang, Zixiao Li and Yongjun Wang
Brain Sci. 2024, 14(5), 439; https://doi.org/10.3390/brainsci14050439 (registering DOI) - 28 Apr 2024
Abstract
This study aims to investigate the association between HCT (Hematocrit) levels and adverse outcomes in patients with acute ischemic stroke (AIS) or transient ischemic attack (TIA); 14,832 participants from the China National Stroke Registry-III with AIS or TIA were analyzed. Participants were categorized [...] Read more.
This study aims to investigate the association between HCT (Hematocrit) levels and adverse outcomes in patients with acute ischemic stroke (AIS) or transient ischemic attack (TIA); 14,832 participants from the China National Stroke Registry-III with AIS or TIA were analyzed. Participants were categorized into quartiles based on baseline HCT levels. The primary outcome was poor functional outcomes (modified Rankin Scale ≥ 3) during three months, with secondary outcomes including all-cause death, stroke recurrence, and combined vascular events. Logistic regression or Cox regression models were used to assess the relationship between HCT and clinical outcomes. Compared to the third quartile, patients in the lowest quartile group showed increased risk of poor functional outcome (adjusted OR: 1.35, 95% CI: 1.15–1.58, p < 0.001), patients in the lowest quartile had a higher risk of all-cause death (adjusted HR: 1.68, 95% CI: 1.06–2.68, p = 0.028), as did those in the highest quartile (adjusted HR: 2.02, 95% CI: 1.26–3.25, p = 0.004). Sensitivity analysis shows that the association of HCT with all-cause death weakened, while the association with poor functional outcome was strengthened after excluding patients with recurrent stroke. Our results indicated that HCT level could be used as a short-term predictor for poor functional outcomes and all-cause death in patients with AIS or TIA. Full article
(This article belongs to the Section Neurorehabilitation)
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13 pages, 1880 KiB  
Article
Selected Useful Properties of Polylactide Films Containing Nisaplin and Natamax
by Agnieszka Richert, Katarzyna Dembińska, Natalia Hejda, Paulina Brzęcka, Magdalena Lewandowska and Maria Swiontek Brzezinska
Appl. Sci. 2024, 14(9), 3754; https://doi.org/10.3390/app14093754 (registering DOI) - 28 Apr 2024
Abstract
In this article, we present polymer materials consisting of polylactide (PLA) and nisaplin (N), as well as PLA and natamax (X). These materials were obtained using the solvent method and tested by various test methods, i.e., functional properties—water vapor permeability, light transmission, gloss, [...] Read more.
In this article, we present polymer materials consisting of polylactide (PLA) and nisaplin (N), as well as PLA and natamax (X). These materials were obtained using the solvent method and tested by various test methods, i.e., functional properties—water vapor permeability, light transmission, gloss, and bactericidal activity against strains E. coli (ATCC 8739P), S. aureus (ATCC 65388), and P. aeruginosa (ATCC 8739). Furthermore, analyses were conducted to evaluate their efficacy against pathogenic fungi, including A. niger, A. flavus, A. glaucus, and A. versicolor. Mutagenicity analyses were performed using the standard Ames Test with Salmonella typhimurium. The main test methods used were ISO 22196, ISO 846. The results obtained confirm the potential suitability of the films of PLA with nisaplin and natamax for applications in the food packaging industry. Full article
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14 pages, 6895 KiB  
Article
Effect of Geometrical Parameters on the Mechanical Performance of Bamboo-Inspired Gradient Hollow-Strut Octet Lattice Structure Fabricated by Additive Manufacturing
by Junxian Ge, Yu Song, Zhenyu Chen, Yuhao Zhuo, Tongzheng Wei, Chen Ge, Yuang Cheng, Ming Liu and Qingbo Jia
Micromachines 2024, 15(5), 583; https://doi.org/10.3390/mi15050583 (registering DOI) - 28 Apr 2024
Abstract
Hollow-strut metal lattice structures are currently attracting extensive attention due to their excellent mechanical performance. Inspired by the node structure of bamboo, this study aimed to investigate the mechanical performance of the gradient hollow-strut octet lattice structure fabricated by laser powder bed fusion [...] Read more.
Hollow-strut metal lattice structures are currently attracting extensive attention due to their excellent mechanical performance. Inspired by the node structure of bamboo, this study aimed to investigate the mechanical performance of the gradient hollow-strut octet lattice structure fabricated by laser powder bed fusion (LPBF). The effect of geometrical parameters on the yield strength, Young’s modulus and energy absorption of the designed octet unit cells were studied and optimized by FEA analysis. The hollow-strut geometrical parameters that deliver the best mechanical property combinations were identified, and the corresponding unit cells were then redesigned into the 3 × 3 × 3 type lattice structures for experimental evaluations. Compression tests confirmed that the designed gradient hollow-strut octet lattice structures demonstrated superior mechanical properties and deformation stability than their solid-strut lattice structure counterparts. The underlying deformation mechanism analysis revealed that the remarkably enhanced bending strength of the gradient hollow-strut lattice structure made significant contributions to its mechanical performance improvement. This study is envisaged to shed light on future hollow-strut metal lattice structure design for lightweight applications, with the final aim of enhancing the component’s mechanical properties and/or lowering its density as compared with the solid-strut lattice structures. Full article
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15 pages, 4075 KiB  
Article
Cytokine Receptor-like Factor 1 (CRLF1) and Its Role in Osteochondral Repair
by Fenglin Zhang, Andrew J. Clair, John F. Dankert, You Jin Lee, Kirk A. Campbell and Thorsten Kirsch
Cells 2024, 13(9), 757; https://doi.org/10.3390/cells13090757 (registering DOI) - 28 Apr 2024
Abstract
Background: Since cytokine receptor-like factor 1 (CRLF1) has been implicated in tissue regeneration, we hypothesized that CRLF1 released by mesenchymal stem cells can promote the repair of osteochondral defects. Methods: The degree of a femoral osteochondral defect repair in rabbits after intra-articular injections [...] Read more.
Background: Since cytokine receptor-like factor 1 (CRLF1) has been implicated in tissue regeneration, we hypothesized that CRLF1 released by mesenchymal stem cells can promote the repair of osteochondral defects. Methods: The degree of a femoral osteochondral defect repair in rabbits after intra-articular injections of bone marrow-derived mesenchymal stem cells (BMSCs) that were transduced with empty adeno-associated virus (AAV) or AAV containing CRLF1 was determined by morphological, histological, and micro computer tomography (CT) analyses. The effects of CRLF1 on chondrogenic differentiation of BMSCs or catabolic events of interleukin-1beta-treated chondrocyte cell line TC28a2 were determined by alcian blue staining, gene expression levels of cartilage and catabolic marker genes using real-time PCR analysis, and immunoblot analysis of Smad2/3 and STAT3 signaling. Results: Intra-articular injections of BMSCs overexpressing CRLF1 markedly improved repair of a rabbit femoral osteochondral defect. Overexpression of CRLF1 in BMSCs resulted in the release of a homodimeric CRLF1 complex that stimulated chondrogenic differentiation of BMSCs via enhancing Smad2/3 signaling, whereas the suppression of CRLF1 expression inhibited chondrogenic differentiation. In addition, CRLF1 inhibited catabolic events in TC28a2 cells cultured in an inflammatory environment, while a heterodimeric complex of CRLF1 and cardiotrophin-like Cytokine (CLC) stimulated catabolic events via STAT3 activation. Conclusion: A homodimeric CRLF1 complex released by BMSCs enhanced the repair of osteochondral defects via the inhibition of catabolic events in chondrocytes and the stimulation of chondrogenic differentiation of precursor cells. Full article
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