Citation:

PANGAEA.833670

Name: Seawater carbonate chemistry and mantle gene expression patterns of the Baltic Sea blue mussel in a laboratory experiment
Published: 2013
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Baltic Sea; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Gene expression (incl. proteomics); Laboratory experiment; Mollusca; Mytilus edulis; Single species; Temperate

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Keyword(s):

Animalia; Baltic Sea; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Gene expression (incl. proteomics); Laboratory experiment; Mollusca; Mytilus edulis; Single species; Temperate

Related to:

Hüning, Anne K; Melzner, Frank; Thomsen, Jörn; Gutowska, Magdalena A; Krämer, Lars; Frickenhaus, Stephan; Rosenstiel, Philip; Pörtner, Hans-Otto; Philipp, Eva E R; Lucassen, Magnus (2013): Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism. Marine Biology, 160(8), 1845-1861, https://doi.org/10.1007/s00227-012-1930-9

Original version:

Hüning, Anne K; Melzner, Frank; Thomsen, Jörn; Gutowska, Magdalena A; Krämer, Lars; Frickenhaus, Stephan; Rosenstiel, Philip; Pörtner, Hans-Otto; Philipp, Eva E R; Lucassen, Magnus (2013): Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism, link to supplementary material. PANGAEA, https://doi.org/10.1594/PANGAEA.823198

Further details:

Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4. https://cran.r-project.org/package=seacarb

Project(s):

Biological Impacts of Ocean Acidification (BIOACID)

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Hüning, Anne K
2	Identification	ID		Hüning, Anne K		animal
3	Tissues	Tissues		Hüning, Anne K
4	Treatment	Treat		Hüning, Anne K
5	Gene name	Gene		Hüning, Anne K
6	Gene expression, fold change, relative	Gene expression		Hüning, Anne K		mean log2 fold-change
7	Gene expression, fold change, relative, standard error	Gene expression std e	±	Hüning, Anne K		log2 fold-change
8	Gene expression, fold change, relative	Gene expression		Hüning, Anne K		log2 fold-change
9	Salinity	Sal		Hüning, Anne K
10	Salinity, standard deviation	Sal std dev	±	Hüning, Anne K
11	Temperature, water	Temp	°C	Hüning, Anne K
12	Temperature, water, standard deviation	Temp std dev	±	Hüning, Anne K
13	pH	pH		Hüning, Anne K	Potentiometric	NBS scale
14	pH, standard deviation	pH std dev	±	Hüning, Anne K	Potentiometric	NBS scale
15	Alkalinity, total	AT	µmol/kg	Hüning, Anne K	Potentiometric titration
16	Alkalinity, total, standard deviation	AT std dev	±	Hüning, Anne K	Potentiometric titration
17	Carbon, inorganic, dissolved	DIC	µmol/kg	Hüning, Anne K	Coulometric titration
18	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Hüning, Anne K	Coulometric titration
19	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	Pa	Hüning, Anne K	Calculated using CO2SYS
20	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Hüning, Anne K	Calculated using CO2SYS
21	Calcite saturation state	Omega Cal		Hüning, Anne K	Calculated using CO2SYS
22	Calcite saturation state, standard deviation	Omega Cal std dev	±	Hüning, Anne K	Calculated using CO2SYS
23	Aragonite saturation state	Omega Arg		Hüning, Anne K	Calculated using CO2SYS
24	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Hüning, Anne K	Calculated using CO2SYS
25	Carbonate system computation flag	CSC flag		Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
26	pH	pH		Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)	total scale
27	Carbon dioxide	CO2	µmol/kg	Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
28	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
29	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
30	Bicarbonate ion	[HCO3]-	µmol/kg	Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
31	Carbonate ion	[CO3]2-	µmol/kg	Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
32	Aragonite saturation state	Omega Arg		Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)
33	Calcite saturation state	Omega Cal		Nisumaa, Anne-Marin	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

94083 data points

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