Skip to main content
Log in

DNA of the Streptomyces phage SH10: Binding sites for Escherichia coli RNA polymerase and denaturation map

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

Escherichia coli RNA polymerase bound to Streptomyces phage SH10 DNA was visualized by electron microscopy. Six specific binding sites were observed at map units 53, 85, 93, 97, 98, and 99 on the physical map of the 48 kb long genome. Electron microscopy of partially denatured SH10 DNA revealed a characteristic melting pattern of A+T-rich regions around map units 1, 3, 48, 52, and 99. A comparison of the denaturation map with the RNA polymerase binding sites indicates that three binding sites are located in the most A+T-rich regions, two in other early melting regions and one in a segment of higher DNA helix stability.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bibb MJ, Schottel JL, Cohen SN (1980) A DNA cloning system for interspecies gene transfer in antibiotic-producing Streptomyces. Nature 284:526–531

    Google Scholar 

  • Bordier C, Dubochet J (1974) Electron microscopic localization of the binding sites of E. coli RNA polymerase in the early promoter region of T7 DNA. Eur J Biochem 44:617–624

    Google Scholar 

  • Brack C, Bickle TA, Yuan R (1975) The relation of single-stranded regions in bacteriophage PM2 supercoiled DNA to the early melting sequences. J Mol Biol 96:693–702

    Google Scholar 

  • Chater KF, Hopwood DA, Kieser T, Thompson CJ (1982) Gene cloning in Streptomyces. Curr Topics Microbiol Immunol 96:69–95

    Google Scholar 

  • Davis RW, Hyman RW (1970) Physical locations of the in vitro RNA initiation site and termination sites of T7M DNA. Cold Spring Harbor Symp Quant Biol 35:269–281

    Google Scholar 

  • Delius H, Clements JB (1976) A partial denaturation map of herpex simplex virus type 1 DNA: Evidence for inversions of the unique DNA regions. J Gen Virol 33:125–133

    Google Scholar 

  • Giacomoni PU, Delain E, LePecq JB (1977) Electron microscopy analysis of the interaction between Escherichia coli DNA-dependent RNA polymerase and the replicative form of phage fd DNA. I. Mapping of the binding sites. Eur J Biochem 78:205–213

    Google Scholar 

  • Hale P, Woodward RS, Lebowitz J (1980) E. coli RNA polymerase promoters on superhelical SV40 DNA are highly selective targets for chemical modification. Nature 284:640–644

    Google Scholar 

  • Horinouchi S, Uozumi T, Beppu T (1980) Cloning of Streptomyces DNA into E. coli: Absence of heterospecific gene expression of Streptomyces genes in E. coli. Agr Biol Chem 44:367–381

    Google Scholar 

  • Hyman RW, Summers W (1972) Isolation and physical mapping of T7 gene 1 messenger RNA. J Mol Biol 71:573–582

    Google Scholar 

  • Inman RB (1974) Denaturation mapping of DNA. In: Grossman L, Moldave K (eds) Methods in enzymology, vol 29. Academic Press, New York, pp 451–458

    Google Scholar 

  • Klaus S, Krügel H, Süss F, Neigenfind M, Zimmermann I, Taubeneck U (1981) Properties of the temperate actinophage SH10. J Gen Microbiol 123:269–279

    Google Scholar 

  • Klaus S, Triebel H, Hartmann M, Walter A, Walter F, Zöpel P, Bär H (1979) Molecular characterization of the genomes of actinophages SH3, SH10, SH11, and SH12 infecting Streptomyces hygroscopicus. Mol Gen Genet 172:319–327

    Google Scholar 

  • Koller T, Kübler O, Portmann R, Sogo JM (1978) High resolution mapping of specific binding sites of E. coli RNA polymerase on the DNA of bacteriophage T7. J Mol Biol 120:121–131

    Google Scholar 

  • Koller T, Sogo JM, Bujard H (1974) An electron microscopic method for studying nucleic acid-protein complexes. Visualization of RNA polymerase bound to the DNA of bacteriophages T7 and T3. Biopolymers 13:995–1009

    Google Scholar 

  • Lescure B, Oudet P, Chambon P, Yaniv M (1976) Transcription of polyoma virus in vitro. Localization of Escherichia coli RNA polymerase initiation sites. J Mol Biol 108:83–97

    Google Scholar 

  • LeTalaer JY, Kermici M, Jeanteur P (1973) Isolation of Escherichia coli RNA polymerase binding sites on T5 and T7 DNA: Further evidence for sigma-dependent recognition of A-T-rich DNA sequences. Proc Natl Acad Sci USA 70:2911–2915

    Google Scholar 

  • Lindquist BH, Williams RC (1979) Distribution of RNA polymerase binding sites on the P4 chromosome. Virology 96:274–276

    Google Scholar 

  • Meyer J, Iida S, Arber W (1980) Does the insertion element IS1 transpose preferentially into A+T-rich DNA segments? Mol Gen Genet 178:471–473

    Google Scholar 

  • Meyer J, Stålhammar-Carlemalm M, Iida S (1981) Denaturation map of bacteriophage P1 DNA. Virology 110:167–175

    Google Scholar 

  • Portmann R, Sogo JM, Koller T, Zillig W (1974) Binding sites for E. coli RNA polymerase on T7 DNA as determined by electron microscopy. FEBS Letters 45:64–67

    Google Scholar 

  • Portmann R, Koller T (1976) The divalent cation method for protein-free spreading of nucleic acid molecules. In: Ben-Shaul Y (ed) Electron microscopy 1976, vol II, Tal International Publishing Co, pp 546–548

  • Rassart E, Spencer JH, Zollinger M (1979) Localization of Escherichia coli RNA polymerase binding sites on bacteriophage S13 and ØX174 DNAs by electron microscopy. J Virol 29:179–184

    Google Scholar 

  • Rosenberg M, Court D (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet 13:319–353

    Google Scholar 

  • Royer HD, Hollenberg CP (1979) Mapping of E. coli RNA polymerase binding sites on 2-μm DNA from Saccharomyces cerevisiae. Plasmid 2:403–416

    Google Scholar 

  • Schottel JL, Bibb MJ, Cohen SN (1981) Cloning and expression in Streptomyces lividans of antibiotic resistance genes derived from E. coli. J Bacteriol 146:360–368

    Google Scholar 

  • Schupp T, Toupet C, Stålhammar-Carlemalm M, Meyer J (1983) Expression of a neomycin phosphotranferase gene from Streptomyces fradiae in Escherichia coli after interplasmidic recombination. Mol Gen Genet 189:27–33

    Google Scholar 

  • Sladkova IA (1980) Physical mapping of Streptomyces coelicolor A3 (2) actinophages. IV. Denaturation maps of DNA. Molek Biol 14:1137–1141

    Google Scholar 

  • Sogo JM, Inciarte MR, Corral J, Vinuela E, Salas M (1979a) RNA polymerase binding sites and transcription map of the DNA of Bacillus subtilis phage Ø29. J Mol Biol 127:411–436

    Google Scholar 

  • Sogo JM, Rodeno P, Koller T, Vinuela E, Salas M (1979b) Comparison of the A-T rich regions and the Bacillus subtilis polymerase binding sites in phage Ø29 DNA. Nucleic Acids Res 7:107–120

    Google Scholar 

  • Stüber D, Bujard H (1977) Electron microscopy of DNA: Determination of absolute molecular weights and linear density. Mol Gen Genet 154:299–303

    Google Scholar 

  • Suarez JE, Chater KF (1980) DNA cloning in Streptomyces: a bifunctional replicon comprising pBR322 inserted into a Streptomyces phage. Nature 286:527–529

    Google Scholar 

  • Thompson CJ, Ward JM, Hopwood DA (1980) DNA cloning in Streptomyces: resistance genes fom antibiotic-producing species. Nature 286:525–527

    Google Scholar 

  • Vogel F, Scherneck S (1981) Electron microscopic mapping of RNA polymerase binding sites on SV40 DNA. Gene 16:331–334

    Google Scholar 

  • Vogel F, Scherneck S (1982) A comparison of the phage T4 gene 32 protein and E. coli RNA polymerase binding sites on hamster papovavirus DNA. Biochim Biophys Acta 696:102–106

    Google Scholar 

  • Vollenweider HJ, Szybalski W (1978) Electron microscopic mapping of RNA polymerase binding to coliphage lambda DNA. J Mol Biol 123:485–498

    Google Scholar 

  • Vollenweider HJ, Fiandt M, Szybalski W (1979) A relationship between DNA helix stability and recognition sites for RNA polymerase. Science 205:508–511

    Google Scholar 

  • Vollenweider HJ, Fiandt M, Szybalski W (1980) Construction and properties of a ColEl-Tn3-cos lambda plasmid for determining RNA polymerase binding sites on ColEl and Tn3. Gene 9:157–170

    Google Scholar 

  • Walter F, Hartmann M, Klaus S (1981) Restriction endonuclease analysis of DNA from the Streptomyces phages SH3, SH5, SH10 and SH13, Gene 13:57–63

    Google Scholar 

  • Williams RC, Chamberlin MJ (1977) Electron microscope studies of transient complexes formed between Escherichia coli RNA polymerase holoenzyme and T7 DNA. Proc Natl Acad Sci USA 74:3740–3744

    Google Scholar 

  • Williams RC, Fisher WH (1980) Electron microscopic determination of the preferential binding sites of E. coli RNA polymerase to ØX174 replicative form DNA. J Mol Biol 140:335–339

    Google Scholar 

  • Zollinger M, Guertin M, Mamet-Bratley MD (1977) A new electron microscopic method for studying protein-nucleic acid interactions. Anal Biochem 82:196–203

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by H. Böhme

Rights and permissions

Reprints and permissions

About this article

Cite this article

Klaus, S., Vogel, F., Gautschi, J. et al. DNA of the Streptomyces phage SH10: Binding sites for Escherichia coli RNA polymerase and denaturation map. Molec Gen Genet 189, 21–26 (1983). https://doi.org/10.1007/BF00326050

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00326050

Keywords

Navigation