Abstract
The graph-theoretical (topological) distance matrix and the geometric (topographic) distance matrix and their invariants (polynomials, spectra, determinants and Wiener numbers) are presented. Methods of computing these quantities are discussed. The uses of the distance matrix in both forms and the related invariants in chemistry are surveyed. Special attention is paid to the 2D and 3D Wiener numbers, defined respectively as one half of the sum of entries in the topological distance matrix and the topographic distance matrix. These numbers appear to be very valuable molecular descriptors in the structure property correlations.
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V. Prelog, in:Mathematics and Computational Concepts in Chemistry, ed. N. Trinajstić (Horwood, Chichester, 1986), p. 1.
F. Harary,Graph Theory, 2nd Ed. (Addison-Wesley, Reading, MA, 1971), p. 203.
L.W. Beineke and R.J. Wilson, in:Selected Topics in Graph Theory, ed. L.W. Beineke and R.J. Wilson (Academic Press, London, 1978), p. 13.
R.L. Graham, in:Selected Topics in Graph Theory 3, ed. L.W. Beineke and R.J. Wilson (Academic Press, London, 1983), p. 133.
G.M. Crippen, J. Comput. Phys. 24 (1977)96; J. Math. Chem. 6(1991)307.
T.F. Havel, I.D. Kuntz and G.M. Crippen, Bull. Math. Biol. 45 (1983)665.
R.L. Graham and P.M. Winkler, Trans. Amer. Math. Soc. 288 (1985)527.
D.H. Rouvray, in:Chemical Applications of Graph Theory, ed. A.T. Balaban (Academic Press, London, 1976), p. 175.
N. Trinajstić,Chemical Graph Theory, Vol. 2 (CRC Press, Boea Raton, 1983), Ch. 4.
D.H. Rouvray, in:Mathematics and Computational Concepts in Chemistry (Horwood, Chichester, 1986), p. 295.
G.M. Crippen and T.F. Havel,Distance Geometry and Molecular Conformation (Wiley, New York, 1988).
P.J. Hansen and P.C. Jurs, J. Chem. Educ. 65 (1988)574.
K. Balasubramanian, Chem. Phys. Lett. 169 (1990)224.
N. Trinajstić,Chemical Graph Theory, 2nd rev. Ed. (CRC Press, Boca Raton, 1992), Ch. 4.
R.C. Prim, Bell Syst. Tech. J. 36 (1957)1389.
S.L. Hakimi and S.S. Yau, Quart. Appl. Math. 22 (1964)305.
F.T. Boesch, Quart. Appl. Math. 26 (1968)607.
R.L. Graham and H.O. Pollak, Bell Syst. Tech. J. 50 (1971)2495.
M. Edelberg, M.R. Garey and R.L. Graham, Discr. Math. 14 (1976)23.
R.L. Graham, A.J. Hoffman and H. Hosoya, J. Graph Theory 1 (1977)85.
J.M.S. Simões-Pereira and C.M. Zamfirescu, Linear Algebra and Its Applications 44 (1982)1.
R.E. Prather,Elements of Discrete Mathematics (Houghton Miffin, Boston, 1986), p. 413.
M.R. Hoare, Adv. Chem. Phys. 40 (1979)49.
A. Cayley, Cambridge Math. J. 2 (1841)267.
M.G. Brunel, Mémoires Soc. Sci. Bordeaux 5 (1895)165.
M.J. Clark and S.F.A. Kettle, Inorg. Chim. Acta 14 (1975)201.
I. Tinoco, Jr., O.C. Uhlenbeck and M.D. Levine, Nature 230 (1971)362.
H. Hosoya, Bull. Chem. Soc. Japan 44 (1971)2332.
D.H. Rouvray, Sci. Amer. 254 (1986)40.
A.T. Balaban (ed.),Chemical Applications of Graph Theory (Academic Press, London, 1976).
R.B. King (ed.),Chemical Applications of Topology and Graph Theory (Elsevier, Amsterdam, 1983).
N. Trinajstić (ed.),Mathematics and Computational Concepts in Chemistry (Horwood, Chichester, 1986).
H. Hosoya, M. Murakami and M. Gotoh, Nat. Sci. Rep. Ochanomizu Univ. (Tokyo) 24 (1973)27.
P. Křivka and N. Trinajstić, Appl. Mat. (Prague) 28 (1983)357; A. Graovac, G. Jashari and M. Strunje, Appl. Mat. 30(1985)286.
K. Balasubramanian, J. Comput. Chem. 11 (1990)829.
H. Wiener, J. Amer. Chem. Soc. 69 (1947)17.
D. Bonehev,Information Theoretic Indices for Characterization of Chemical Structures (Wiley, Chichester, 1983), p. 71.
I. Gutman and O.E. Polansky,Mathematical Concepts in Organic Chemistry (Springer, Berlin, 1986), p. 124.
D. Bonehev and N. Trinajstić, J. Chem. Phys. 67 (1977)4517.
D. Bonehev and N. Trinajstić, Int. J. Quant. Chem. Quant. Chem. Symp. 12 (1978)293.
A.T. Balaban, Chem. Phys. Lett. 89 (1982)399.
P.G. Seybold, M. May and U.A. Bagal, J. Chem. Educ. 64 (1987)575.
D.E. Needham, I.-C. Wei and P.G. Seybold, J. Amer. Chem. Soc. 110 (1988)4186.
M. Randić, in:MATHICHEMICOMP 1987, ed. R.C. Lacher (Elsevier, Amsterdam, 1988), p. 101.
M. Randić, Int. J. Quant. Chem. Quant. Biol. Symp. 15 (1988)201.
I. Lukovits, J. Chem. Soc. Perkin Trans. II (1988)1667; Quant. Struct.-Act. Relat. 9(1990)227; Rep. Mol. Theory 1(1990)127.
H.P. Schultz, J. Chem. Inf. Comput. Sci. 29 (1989)227.
B. Bogdanov, S. Nikolić and N. Trinajstić, J. Math. Chem. 3 (1989)291; 5(1990)305.
S.S. Tratch, M.I. Stankevich and N.S.Zefirov, J. Comput. Chem. 11 (1990)899.
H.P. Schultz, E.B. Schultz and T.P. Schultz, J. Chem. Inf. Comput. Sci. 30 (1990)27.
W.R. Müller, K. Szymanski, J.V. Knop and N. Trinajstić, J. Chem. Inf. Comput. Sci. 30 (1990)160.
J.V. Knop, W.R. Müller, K. Szymanski and N. Trinajstić, J. Chem. Inf. Comput. Sci. 31 (1991)83.
H.P. Schultz and T.P. Schultz, J. Chem. Inf. Comput. Sci. 31 (1991)145.
N. Bošnjak, Z. Mihalić and N. Trinajstić, J. Chromatogr. 540 (1991)430.
A.T. Balaban, Pure. Appl. Chem. 55 (1983)199.
M.I. Stankevich, I.V. Stankevich and N.S. Zefirov, Russian Chem. Rev. 57 (1988)191.
Z. Mihalić, S. Nikolić and N. Trinajstić, J. Chem. Inf. Comput. Sci. 32 (1992)28.
F. Harary, in:Applied Combinatorial Mathematics, ed. E.F. Beckenbach (Wiley, New York, 1964), p. 185.
F. Harary, in:A Seminar on Graph Theory, ed. F. Harary and L.W. Beineke (Holt, Reinhart and Winston, New York, 1967), p. 9.
A.N. Patrinos and S.L. Hakimi, Quart. Appl. Math. 30 (1973)255.
J.K. Kruskal, Jr., Proc. Amer. Math. Soc. 7 (1956)48.
W. Mayeda,Graph Theory (Wiley, New York, 1972).
D.E. Johnson and J.R. Johnson,Graph Theory with Engineering Applications (Ronald Press, New York, 1972).
N. Trinajstić,Chemical Graph Theory, 2nd rev. Ed. (CRC Press, Boca Raton, 1991), Ch. 3.
A. Graovac, O.E. Polansky, N. Trinajstić and N. Tyutyulkov, Z. Naturforsch. 30a (1975)1696.
M.J. Rigby, R.B. Mallion and A.C. Day, Chem. Phys. Lett. 51 (1977)178; erratum 53(1978)418.
M. Barysz, G. Jashari, R.S. Lall, V.K. Srivastava and N. Trinajstić, in:Chemical Applications of Topology and Graph Theory, ed. R.B. King (Elsevier, Amsterdam, 1983), p. 222.
N. Trinajstić, Kern. Ind (Zagreb) 33 (1984)311.
A.T. Balaban, Math. Chem. (Mülheim/Ruhr) 21 (1986)115.
M. Randić, A. Sabljić, S. Nikolić and N. Trinajstić, Int. J. Quant. Chem. Quant. Chem. Symp. 15 (1988)267.
A.T. Balaban and O. Ivanciuc, in:MATHICHEMICOMP 1988, ed. A. Graovac (Elsevier, Amsterdam, 1989), p. 193.
C. Berge,Théorie des Graphes et ses Applications (Dunod, Paris, 1958), p. 136.
F.S. Roberts,Discrete Mathematical Model (Prentice-Hall, Englewood Cliffs, 1976), p. 58; see also H. Hosoya, in:Proceedings of the Conference on Molecular Structure (Tokyo, 1970), p. 291.
R.W. Floyd, Comm. ACM 5 (1962)345.
M. Bershon, J. Comput. Chem. 4 (1983)110.
I.V. Peredunova, V.E. Kuzmin and Y.P. Konovortskii, Russian J. Struct. Chem. 24 (1983)645.
N. Deo and C. Pang, Networks 14 (1984)275.
W.R. Müller, K. Szymanski, J.V. Knop and N. Trinajstić, J. Comput. Chem. 8 (1987)170.
B. Mohar and T. Pisanski, J. Math. Chem. 2 (1988)267.
P. Senn, Comput. Chem. 12 (1988)219.
C. Jochum and J. Gasteiger, J. Chem. Inf. Comput. Sci. 17 (1977)113.
W. Schubert and I. Ugi, J. Amer. Chem. Soc. 100 (1978)37.
M. Randid and C.L. Wilkins, J. Chem. Inf. Comput. Sci. 19 (1979)31.
M. Uchino, J. Chem. Inf. Comput. Sci. 20 (1980)116.
D. Bonchev, A.T. Balaban and O. Mekenyan, J. Chem. Inf. Comput. Sci. 20 (1980)106.
D. Bonchev, A.T. Balaban and M. Randić, Int. J. Quant. Chem. 19 (1981)61; 22(1982)441.
D. Bonchev, O. Mekenyan and A.T. Balaban, J. Chem. Inf. Comput. Sci. 29 (1989)91.
U.J.J. Le Verrier, J. Math. 5 (1840)95, 220.
V.N. Faddeeva,Computational Methods of Linear Algebra (Dover, New York, 1959).
D.K. Faddeev and I.S. Sominskii,Problems in Higher Algebra (Freeman, San Francisco, 1965).
P.S. Dwyer,Linear Computations (Wiley, New York, 1951), p. 225.
K. Balasubramanian, Theor. Chim. Acta 65 (1984)49; J. Comput. Chem. 5(1984)387; 6(1985)659; 9(1988)204; 12(1991)248.
R. Ramaraj and K. Balasubramanian, J. Comput. Chem. 6 (1985)122.
P. Křivka, Z. Jeričević and N. Trinajstić, Int. J. Quant. Chem. Quant. Chem. Symp. 19 (1986)129.
T.P. Živković, J. Comput. Chem. 11 (1990)217.
C.-E. Fröberg,Introduction to Numerical Analysis, 2nd Ed. (Addison-Wesley, Reading, MA, 1970), Ch. 6.
I. Guturan and N. Trinajstiś, Topics Curr. Chem. 42 (1973)49.
W.C. Hemdon, Tetrahedron Lett. (1974)671.
T. Živković, N. Trinajstić and M. Randić, Mol. Phys. 30 (1975)517.
W.C. Hemdon and M.L. Ellzey, Jr., Tetrahedron 31 (1975)99.
M. Randić, N. Trinajstić and T. Mivkovié, J. Chem. Soc. Faraday Trans. II (1976)244.
S.S. D'Amato, B.M. Gimarc and N. Trinajstić, Croat. Chem. Acta 54 (1981)1.
N. Trinajstić,Chemical Graph Theory, Vol. 1 (CRC Press, Boca Raton, 1983), Ch. 7.
M. Randić, M. Barysz, J. Nowakowski, S. Nikolić and N. Trinajstić, J. Mol. Struct. (THEOCHEM) 185 (1989)95.
J.R. Dias,Molecular Orbital Calculations using Chemical Graph Theory (Springer, Berlin, 1992).
A.J. Schwenk, in:New Directions in the Theory of Graphs, ed. F. Harary (Academic Press, New York, 1973), p. 275.
T. Živković, Report at the Quantum Chemistry School, Repino near Leningrad, December 1973.
B.B. McKay, Ars Combinatoria 3 (1977)219.
R.L. Graham and L. Lovász, Adv. Math. 29 (1978)60; see also K.L. Collins, Discr. Appl. Math. 25(1989)27.
R.L. Graham and L. Lovász, Lecture Notes Math. 642 (1978)186.
D. Plavšić and N. Trinajstić, unpublished.
D. Bonchev, O. Mekenyan and N. Trinajstić, Int. J. Quant. Chem. 17 (1980)845.
M. Barysz, D. Plavgié and N. Trinajstić, Math. Chem. (Mülheim/Ruhr) 89 (1980)149.
D. Bonchev, O. Mekenyan, G. Protić and N. Trinajstić, J. Chromatogr. 176 (1979)149.
E.R. Canfield, R.W. Robinson and D.H. Rouvray, J. Comput. Chem. 6 (1985)598.
N. Adler, D. Babić and N. Trinajstić, Fresenius Z. Anal. Chem. 322 (1985)246.
N. Bošnjak, N. Adler, M. Perić and N. Trinajstić, in:Modelling of Structures and Properties of Molecules, ed. Z.B. Maksić (Horwood, Chichester, 1987), p. 103.
J.R. Chrétien and J.-E. Dubois, J. Chromatogr. 126 (1976)171.
G. Schomburg and G. Dielman, J Chromatogr. Sci. 11 (1973)151.
J.V. King and R.J. Kassel, Int. J. Quant. Chem. Quant. Biol. Symp. 232 (1991)65.
Z. Mihalić and N. Trinajstić, J. Mol. Struct. (THEOCHEM), in press.
S. Nikolié, N. Trinajstić, Z. Mihalić and S. Carter, Chem. Phys. Lett. 179 (1991)21.
K. Burkert and N.L. Allinger, Molecular Mechanics (ACS, Washington, 1982).
A.T. Balaban, Rev. Roum. Chim. 21 (1970)1049.
M. Randić, B. Jerman-Blažič and N. Trinajstić, Comput. Chem. 14 (1990)237.
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Dedicated to Professor Vladimir Prelog (Zurich) on the happy occasion of his 85th birthday.
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Mihalić, Z., Veljan, D., Amić, D. et al. The distance matrix in chemistry. J Math Chem 11, 223–258 (1992). https://doi.org/10.1007/BF01164206
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DOI: https://doi.org/10.1007/BF01164206