The 2023 MDPI Annual Report has
been released!
 
19 pages, 4027 KiB  
Article
A Deep Learning Model for Detecting Diabetic Retinopathy Stages with Discrete Wavelet Transform
by A. M. Mutawa, Khalid Al-Sabti, Seemant Raizada and Sai Sruthi
Appl. Sci. 2024, 14(11), 4428; https://doi.org/10.3390/app14114428 (registering DOI) - 23 May 2024
Abstract
Diabetic retinopathy (DR) is the primary factor leading to vision impairment and blindness in diabetics. Uncontrolled diabetes can damage the retinal blood vessels. Initial detection and prompt medical intervention are vital in preventing progressive vision impairment. Today’s growing medical field presents a more [...] Read more.
Diabetic retinopathy (DR) is the primary factor leading to vision impairment and blindness in diabetics. Uncontrolled diabetes can damage the retinal blood vessels. Initial detection and prompt medical intervention are vital in preventing progressive vision impairment. Today’s growing medical field presents a more significant workload and diagnostic demands on medical professionals. In the proposed study, a convolutional neural network (CNN) is employed to detect the stages of DR. This research is crucial for studying DR because of its innovative methodology incorporating two different public datasets. This strategy enhances the model’s capacity to generalize unseen DR images, as each dataset encompasses unique demographics and clinical circumstances. The network can learn and capture complicated hierarchical image features with asymmetric weights. Each image is preprocessed using contrast-limited adaptive histogram equalization and the discrete wavelet transform. The model is trained and validated using the combined datasets of Dataset for Diabetic Retinopathy and the Asia-Pacific Tele-Ophthalmology Society. The CNN model is tuned in with different learning rates and optimizers. An accuracy of 72% and an area under curve score of 0.90 was achieved by the CNN model with the Adam optimizer. The recommended study results may reduce diabetes-related vision impairment by early identification of DR severity. Full article
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16 pages, 3590 KiB  
Article
Mitigating Trunk Compensatory Movements in Post-Stroke Survivors through Visual Feedback during Robotic-Assisted Arm Reaching Exercises
by Seong-Hoon Lee and Won-Kyung Song
Sensors 2024, 24(11), 3331; https://doi.org/10.3390/s24113331 (registering DOI) - 23 May 2024
Abstract
Trunk compensatory movements frequently manifest during robotic-assisted arm reaching exercises for upper limb rehabilitation following a stroke, potentially impeding functional recovery. These aberrant movements are prevalent among stroke survivors and can hinder their progress in rehabilitation, making it crucial to address this issue. [...] Read more.
Trunk compensatory movements frequently manifest during robotic-assisted arm reaching exercises for upper limb rehabilitation following a stroke, potentially impeding functional recovery. These aberrant movements are prevalent among stroke survivors and can hinder their progress in rehabilitation, making it crucial to address this issue. This study evaluated the efficacy of visual feedback, facilitated by an RGB-D camera, in reducing trunk compensation. In total, 17 able-bodied individuals and 18 stroke survivors performed reaching tasks under unrestricted trunk conditions and visual feedback conditions. In the visual feedback modalities, the target position was synchronized with trunk movement at ratios where the target moved at the same speed, double, and triple the trunk’s motion speed, providing real-time feedback to the participants. Notably, trunk compensatory movements were significantly diminished when the target moved at the same speed and double the trunk’s motion speed. Furthermore, these conditions exhibited an increase in the task completion time and perceived exertion among stroke survivors. This outcome suggests that visual feedback effectively heightened the task difficulty, thereby discouraging unnecessary trunk motion. The findings underscore the pivotal role of customized visual feedback in correcting aberrant upper limb movements among stroke survivors, potentially contributing to the advancement of robotic-assisted rehabilitation strategies. These insights advocate for the integration of visual feedback into rehabilitation exercises, highlighting its potential to foster more effective recovery pathways for post-stroke individuals by minimizing undesired compensatory motions. Full article
(This article belongs to the Special Issue Intelligent Autonomous System)
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22 pages, 2019 KiB  
Review
Ball Milling Innovations Advance Mg-Based Hydrogen Storage Materials Towards Practical Applications
by Yaohui Xu, Yuting Li, Quanhui Hou, Yechen Hao and Zhao Ding
Materials 2024, 17(11), 2510; https://doi.org/10.3390/ma17112510 (registering DOI) - 23 May 2024
Abstract
Mg-based materials have been widely studied as potential hydrogen storage media due to their high theoretical hydrogen capacity, low cost, and abundant reserves. However, the sluggish hydrogen absorption/desorption kinetics and high thermodynamic stability of Mg-based hydrides have hindered their practical application. Ball milling [...] Read more.
Mg-based materials have been widely studied as potential hydrogen storage media due to their high theoretical hydrogen capacity, low cost, and abundant reserves. However, the sluggish hydrogen absorption/desorption kinetics and high thermodynamic stability of Mg-based hydrides have hindered their practical application. Ball milling has emerged as a versatile and effective technique to synthesize and modify nanostructured Mg-based hydrides with enhanced hydrogen storage properties. This review provides a comprehensive summary of the state-of-the-art progress in the ball milling of Mg-based hydrogen storage materials. The synthesis mechanisms, microstructural evolution, and hydrogen storage properties of nanocrystalline and amorphous Mg-based hydrides prepared via ball milling are systematically reviewed. The effects of various catalytic additives, including transition metals, metal oxides, carbon materials, and metal halides, on the kinetics and thermodynamics of Mg-based hydrides are discussed in detail. Furthermore, the strategies for synthesizing nanocomposite Mg-based hydrides via ball milling with other hydrides, MOFs, and carbon scaffolds are highlighted, with an emphasis on the importance of nanoconfinement and interfacial effects. Finally, the challenges and future perspectives of ball-milled Mg-based hydrides for practical on-board hydrogen storage applications are outlined. This review aims to provide valuable insights and guidance for the development of advanced Mg-based hydrogen storage materials with superior performance. Full article
(This article belongs to the Section Materials Chemistry)
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16 pages, 587 KiB  
Review
Can Daily Dietary Choices Have a Cardioprotective Effect? Food Compounds in the Prevention and Treatment of Cardiometabolic Diseases
by Elżbieta Szczepańska, Barbara Janota, Marika Wlazło and Magdalena Gacal
Metabolites 2024, 14(6), 296; https://doi.org/10.3390/metabo14060296 (registering DOI) - 23 May 2024
Abstract
Cardiovascular diseases accompanying metabolic syndrome comprise one of the leading causes of death worldwide. The medical community undertakes attempts to improve treatment options and minimize cardiovascular diseases’ numerous consequences and exacerbations. In parallel with pharmacotherapies provided by physicians, nutritionists are developing strategies for [...] Read more.
Cardiovascular diseases accompanying metabolic syndrome comprise one of the leading causes of death worldwide. The medical community undertakes attempts to improve treatment options and minimize cardiovascular diseases’ numerous consequences and exacerbations. In parallel with pharmacotherapies provided by physicians, nutritionists are developing strategies for diet therapy and prevention based on lifestyle changes, with high success rates. Consumption of specified food compounds included in various products with proven protective properties can be helpful in this regard. Due to the wide possibilities of diet in metabolic health promotion, it seems necessary to systematize information about the metabolically protective and cardioprotective properties of fiber, probiotic bacteria, plant sterols, folic acid, vitamins B12, C, and E, PUFAs, lycopene, polyphenols, arginine, CoQ10, and allicin. The aim of this review was to present the food compounds with potential use in cardiometabolic prevention and diet therapy based on the latest available literature. Full article
(This article belongs to the Special Issue Impact of Food and Bioactive Compounds on Metabolic Diseases)
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16 pages, 3066 KiB  
Article
Analysis of Traffic Injury Crash Proportions Using Geographically Weighted Beta Regression
by Alan Ricardo da Silva and Roberto de Souza Marques Buffone
Infrastructures 2024, 9(6), 89; https://doi.org/10.3390/infrastructures9060089 (registering DOI) - 23 May 2024
Abstract
The classical linear regression model allows for a continuous quantitative variable to be modeled simply from other variables. However, this model assumes independence between observations, which, if ignored, can lead to methodological issues. Additionally, not all data follow a normal distribution, prompting the [...] Read more.
The classical linear regression model allows for a continuous quantitative variable to be modeled simply from other variables. However, this model assumes independence between observations, which, if ignored, can lead to methodological issues. Additionally, not all data follow a normal distribution, prompting the need for alternative modeling methods. In this context, geographically weighted beta regression (GWBR) incorporates spatial dependence into the modeling process and analyzes rates or proportions using the beta distribution. In this study, GWBR was applied to the traffic injury (fatal and non-fatal) crash proportions in Fortaleza, Ceará, Brazil, from 2009 to 2011. The results demonstrated that the local approach using the beta distribution is a viable model for explaining the traffic injury crash proportions, due to its flexibility in handling both symmetric and skewed distributions. Therefore, when analyzing rates or proportions, the use of the GWBR model is recommended. Full article
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12 pages, 2951 KiB  
Article
Electrochemical Study and Mechanical Properties of Ti-Zr Alloy for Biomedical Applications
by Iosif Hulka, Ion-Dragoș Uțu, Santiago Brito-Garcia, Amparo Verdu-Vazquez and Julia C. Mirza-Rosca
Crystals 2024, 14(6), 493; https://doi.org/10.3390/cryst14060493 (registering DOI) - 23 May 2024
Abstract
In response to concerns of potential cytotoxicity and adverse tissue reactions caused by vanadium and aluminum in the currently used biomaterial Ti-6Al-4V, the Ti–20Zr alloy was evaluated in this study because it has been suggested as a candidate for human body implant material. [...] Read more.
In response to concerns of potential cytotoxicity and adverse tissue reactions caused by vanadium and aluminum in the currently used biomaterial Ti-6Al-4V, the Ti–20Zr alloy was evaluated in this study because it has been suggested as a candidate for human body implant material. The Ti-20Zr alloy was obtained by vacuum-melting, followed by heat treatment at 1000 °C for 1 h, and then air-cooled. Optical and scanning electron microscopy revealed that the sample had an α and β lamellar microstructure. Analysis showed that the mechanical properties, in terms of hardness measurements performed at low loads, were significantly different between the two phases. Thus, it was found out that the α phase is softer by about 30% compared to the β phase. The Electrochemical Impedance Spectroscopy technique (EIS) was employed to study the electrochemical behavior in simulated body fluid (SBF). The electrochemical behavior demonstrated that Ti-20Zr alloy exhibits excellent corrosion resistance due to the stable oxide layer formed on its surface. SEM and EDS investigations showed that the surface topography, after electrochemical studies, is characterized by a porous film with increased oxygen content, which might be suitable for the osteoinductive growth of bone. Full article
(This article belongs to the Special Issue Microstructure and Mechanical Behaviour of Structural Materials)
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22 pages, 2382 KiB  
Article
Unraveling the Potential of Attentive Bi-LSTM for Accurate Obesity Prognosis: Advancing Public Health towards Sustainable Cities
by Hina Ayub, Murad-Ali Khan, Syed Shehryar Ali Naqvi, Muhammad Faseeh, Jungsuk Kim, Asif Mehmood and Young-Jin Kim
Bioengineering 2024, 11(6), 533; https://doi.org/10.3390/bioengineering11060533 (registering DOI) - 23 May 2024
Abstract
The global prevalence of obesity presents a pressing challenge to public health and healthcare systems, necessitating accurate prediction and understanding for effective prevention and management strategies. This article addresses the need for improved obesity prediction models by conducting a comprehensive analysis of existing [...] Read more.
The global prevalence of obesity presents a pressing challenge to public health and healthcare systems, necessitating accurate prediction and understanding for effective prevention and management strategies. This article addresses the need for improved obesity prediction models by conducting a comprehensive analysis of existing machine learning (ML) and deep learning (DL) approaches. This study introduces a novel hybrid model, Attention-based Bi-LSTM (ABi-LSTM), which integrates attention mechanisms with bidirectional Long Short-Term Memory (Bi-LSTM) networks to enhance interpretability and performance in obesity prediction. Our study fills a crucial gap by bridging healthcare and urban planning domains, offering insights into data-driven approaches to promote healthier living within urban environments. The proposed ABi-LSTM model demonstrates exceptional performance, achieving a remarkable accuracy of 96.5% in predicting obesity levels. Comparative analysis showcases its superiority over conventional approaches, with superior precision, recall, and overall classification balance. This study highlights significant advancements in predictive accuracy and positions the ABi-LSTM model as a pioneering solution for accurate obesity prognosis. The implications extend beyond healthcare, offering a precise tool to address the global obesity epidemic and foster sustainable development in smart cities. Full article
(This article belongs to the Special Issue Intelligent IoMT Systems for Brain–Computer Interface)
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16 pages, 8995 KiB  
Article
Identification of ARF Genes and Elucidation of the Regulatory Effects of PsARF16a on the Dormancy of Tree Peony Plantlets
by Zhenzhu Fu, Xin Yuan, Yinge Zhao, Xiaohui Wang, Lin Lu, Huijuan Wang, Yanmin Li, Jie Gao, Limin Wang and Hechen Zhang
Genes 2024, 15(6), 666; https://doi.org/10.3390/genes15060666 (registering DOI) - 23 May 2024
Abstract
The low survival rate of transplanted plantlets, which has limited the utility of tissue-culture-based methods for the rapid propagation of tree peonies, is due to plantlet dormancy after rooting. We previously determined that the auxin response factor PsARF may be a key regulator [...] Read more.
The low survival rate of transplanted plantlets, which has limited the utility of tissue-culture-based methods for the rapid propagation of tree peonies, is due to plantlet dormancy after rooting. We previously determined that the auxin response factor PsARF may be a key regulator of tree peony dormancy. To clarify the mechanism mediating tree peony plantlet dormancy, PsARF genes were systematically identified and analyzed. Additionally, PsARF16a was transiently expressed in the leaves of tree peony plantlets to examine its regulatory effects on a downstream gene network. Nineteen PsARF genes were identified and divided into four classes. All PsARF genes encoded proteins with conserved B3 and ARF domains. The number of motifs, exons, and introns varied between PsARF genes in different classes. The overexpression of PsARF16a altered the expression of NCED, ZEP, PYL, GA2ox1, GID1, and other key genes in abscisic acid (ABA) and gibberellin (GA) signal transduction pathways, thereby promoting ABA synthesis and decreasing GA synthesis. Significant changes to the expression of some key genes contributing to starch and sugar metabolism (e.g., AMY2A, BAM3, BGLU, STP, and SUS2) may be associated with the gradual conversion of sugar into starch. This study provides important insights into PsARF functions in tree peonies. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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13 pages, 594 KiB  
Article
Molecular Markers and Antimicrobial Resistance Patterns of Extraintestinal Pathogenic Escherichia coli from Camel Calves Including Colistin-Resistant and Hypermucoviscuous Strains
by Domonkos Sváb, Zoltán Somogyi, István Tóth, Joseph Marina, V. Jose Shantymol, John Jeeba, Anas Safna, Judit Juhász, Péter Nagy, Ahmed Mohamed Taha Abdelnassir, Ahmed Abdelrhman Ismail and László Makrai
Trop. Med. Infect. Dis. 2024, 9(6), 123; https://doi.org/10.3390/tropicalmed9060123 (registering DOI) - 23 May 2024
Abstract
Extraintestinal pathogenic Escherichia coli (ExPEC) strains are capable of causing various systemic infections in both humans and animals. In this study, we isolated and characterized 30 E. coli strains from the parenchymatic organs and brains of young (<3 months of age) camel calves [...] Read more.
Extraintestinal pathogenic Escherichia coli (ExPEC) strains are capable of causing various systemic infections in both humans and animals. In this study, we isolated and characterized 30 E. coli strains from the parenchymatic organs and brains of young (<3 months of age) camel calves which died in septicemia. Six of the strains showed hypermucoviscous phenotype. Based on minimum inhibitory concentration (MIC) values, seven of the strains were potentially multidrug resistant, with two additional showing colistin resistance. Four strains showed mixed pathotypes, as they carried characteristic virulence genes for intestinal pathotypes of E. coli: three strains carried cnf1, encoding cytotoxic necrotizing factor type 1, the key virulence gene of necrotoxigenic E. coli (NTEC), and one carried eae encoding intimin, the key virulence gene of enteropathogenic E. coli (EPEC). An investigation of the integration sites of pathogenicity islands (PAIs) and the presence of prophage-related sequences showed that the strains carry diverse arrays of mobile genetic elements, which may contribute to their antimicrobial resistance and virulence patterns. Our work is the first to describe ExPEC strains from camels, and points to their veterinary pathogenic as well as zoonotic potential in this important domestic animal. Full article
(This article belongs to the Special Issue Foodborne Zoonotic Bacterial Infections)
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15 pages, 2540 KiB  
Systematic Review
The Use of Mirror Therapy in Peripheral Seventh Nerve Palsy: A Systematic Review
by Marco Castaldo, Giovanni Sellitto, Ilaria Ruotolo, Anna Berardi and Giovanni Galeoto
Brain Sci. 2024, 14(6), 530; https://doi.org/10.3390/brainsci14060530 (registering DOI) - 23 May 2024
Abstract
Background: Conservative therapy is currently the elective treatment for peripheric facial palsy according to scientific literature. The success of conservative therapy is due to physiotherapy and the application of its methods. The aim of this systematic review was to assess mirror therapy, a [...] Read more.
Background: Conservative therapy is currently the elective treatment for peripheric facial palsy according to scientific literature. The success of conservative therapy is due to physiotherapy and the application of its methods. The aim of this systematic review was to assess mirror therapy, a physiotherapeutic method. Objectives: The aim of the following systematic review is to evaluate the effectiveness of using mirror therapy in patients with peripheral paralysis of the seventh cranial nerve. Methods: This systematic review was conducted according to Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) guidelines. The screening of literature was carried out on Cochrane, PEDro, PubMed/Medline, Scopus and Web of Science databases up until August 2022. All studies were randomized controlled trials (RCTs) and 5 articles met the inclusion criteria and were included in this study. The risk of bias was evaluated with PEDro and Jadad scales. Discussion: In the present study, we reviewed 5 RCTs that compared mirror therapy with other physiotherapy treatments or placebo to reduce pain, depression and improve range of motion in patients with peripheric facial nerve palsy. Conclusions: Further studies are needed to determine the effectiveness of this type of treatment, but nevertheless the data obtained are very encouraging. Full article
(This article belongs to the Special Issue Collection Series: Neurorehabilitation Insights in 2024)
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20 pages, 7387 KiB  
Article
Press-Fit Placement of a Rectangular Block Implant in the Resorbed Alveolar Ridge: Surgical and Biomechanical Considerations
by Efthimios Gazelakis, Roy B. Judge, Joseph E. A. Palamara, Shiva Subramanian and Mohsin Nazir
Bioengineering 2024, 11(6), 532; https://doi.org/10.3390/bioengineering11060532 (registering DOI) - 23 May 2024
Abstract
Rectangular Block Implant (RBIs) were manufactured, using computer-aided-design lathe turning, surface roughened with grit blasting and gamma irradiated. Implants were surgically placed into the resorbed edentulous mandibular ridges of both greyhound dogs (ex vivo and in vivo) and humans; the pooled total was [...] Read more.
Rectangular Block Implant (RBIs) were manufactured, using computer-aided-design lathe turning, surface roughened with grit blasting and gamma irradiated. Implants were surgically placed into the resorbed edentulous mandibular ridges of both greyhound dogs (ex vivo and in vivo) and humans; the pooled total was 17 placements. The aim was to achieve mechanical stability and full implant submergence without damage to the mandibular canal and without bone fracture: fulfilment of all of these criteria was deemed to be a successful surgical outcome. Rectangular osteotomy sites were prepared with piezo surgical instrumentation. Sixteen implants were fully submerged and achieved good primary stability without bone fracture and without evidence of impingement of the mandibular canal. One implant placement was deemed a failure due to bone fracture: the event of a random successful outcome was rejected (p < 0.01 confidence, binomial analysis). Technique of placement yielded excellent mechanical retention: key biomechanical factors that emerged in this process included under preparation of the osteotomy site with the use of specifically designed trial-fit gauges, the viscoelastic property of the peri-implant bone, the flat faces and cornered edges of the block surfaces which enhance stress distribution and mechanical retention, respectively. It was concluded that the surgical protocol for the RBI placement in the resorbed alveolus is a predictable clinical procedure tailored to its specific, unique biomechanical profile. Full article
(This article belongs to the Special Issue Translational Advances in Dental Implants)
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16 pages, 4092 KiB  
Article
Dynamic Analysis and Sliding Mode Synchronization Control of Chaotic Systems with Conditional Symmetric Fractional-Order Memristors
by Huaigu Tian, Mingwei Zhao, Jindong Liu, Qiao Wang, Xiong Yu and Zhen Wang
Fractal Fract. 2024, 8(6), 307; https://doi.org/10.3390/fractalfract8060307 (registering DOI) - 23 May 2024
Abstract
In this paper, the characteristics of absolute value memristors are verified through the circuit implementation and construction of a chaotic system with a conditional symmetric fractional-order memristor. The dynamic behavior of fractional-order memristor systems is explored using fractional-order calculus theory and the Adomian [...] Read more.
In this paper, the characteristics of absolute value memristors are verified through the circuit implementation and construction of a chaotic system with a conditional symmetric fractional-order memristor. The dynamic behavior of fractional-order memristor systems is explored using fractional-order calculus theory and the Adomian Decomposition Method (ADM). Concurrently, the investigation probes into the existence of coexisting symmetric attractors, multiple coexisting bifurcation diagrams, and Lyapunov exponent spectra (LEs) utilizing system parameters as variables. Additionally, the system demonstrates an intriguing phenomenon known as offset boosting, where the embedding of an offset can adjust the position and size of the system’s attractors. To ensure the practical applicability of these findings, a fractional-order sliding mode synchronization control scheme, inspired by integer-order sliding mode theory, is designed. The rationality and feasibility of this scheme are validated through a theoretical analysis and numerical simulation. Full article
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16 pages, 9727 KiB  
Article
Optimization of Welded Joints under Fatigue Loadings
by Paolo Livieri and Roberto Tovo
Metals 2024, 14(6), 613; https://doi.org/10.3390/met14060613 (registering DOI) - 23 May 2024
Abstract
In this paper, the notch effect in weldments has been investigated, and the optimal configuration of different types of welded joints has been analysed using the implicit gradient approach. By considering this implicit gradient method, it is possible to calculate the effective stress [...] Read more.
In this paper, the notch effect in weldments has been investigated, and the optimal configuration of different types of welded joints has been analysed using the implicit gradient approach. By considering this implicit gradient method, it is possible to calculate the effective stress related to fatigue damage, with the effective stress being a continuous scalar function of the real stress tensor components, even in the presence of sharp edges. Hence, the search for the optimal configuration that maximises fatigue life can be tackled as the condition of minimum effective stress obtained by changing the weld shape and geometrical parameters. Both load-carrying cruciform joints and spot welds made of steel have been considered. The structural details have been studied by modelling actual shapes without any geometric simplification. Moreover, the same numerical procedure has been considered independently of the size, shape or load condition without imposing restrictive rules on the FE mesh. Full article
(This article belongs to the Special Issue New Welding Materials and Green Joint Technology)
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15 pages, 1842 KiB  
Review
Long Noncoding RNAs in Diet-Induced Metabolic Diseases
by Annette Brandt and Florian Kopp
Int. J. Mol. Sci. 2024, 25(11), 5678; https://doi.org/10.3390/ijms25115678 (registering DOI) - 23 May 2024
Abstract
The prevalence of metabolic diseases, including type 2 diabetes and metabolic dysfunction-associated steatotic liver disease (MASLD), is steadily increasing. Although many risk factors, such as obesity, insulin resistance, or hyperlipidemia, as well as several metabolic gene programs that contribute to the development of [...] Read more.
The prevalence of metabolic diseases, including type 2 diabetes and metabolic dysfunction-associated steatotic liver disease (MASLD), is steadily increasing. Although many risk factors, such as obesity, insulin resistance, or hyperlipidemia, as well as several metabolic gene programs that contribute to the development of metabolic diseases are known, the underlying molecular mechanisms of these processes are still not fully understood. In recent years, it has become evident that not only protein-coding genes, but also noncoding genes, including a class of noncoding transcripts referred to as long noncoding RNAs (lncRNAs), play key roles in diet-induced metabolic disorders. Here, we provide an overview of selected lncRNA genes whose direct involvement in the development of diet-induced metabolic dysfunctions has been experimentally demonstrated in suitable in vivo mouse models. We further summarize and discuss the associated molecular modes of action for each lncRNA in the respective metabolic disease context. This overview provides examples of lncRNAs with well-established functions in diet-induced metabolic diseases, highlighting the need for appropriate in vivo models and rigorous molecular analyses to assign clear biological functions to lncRNAs. Full article
(This article belongs to the Section Biochemistry)
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13 pages, 13323 KiB  
Article
Sensitive Detection and Differentiation of Biologically Active Ricin and Abrin in Complex Matrices via Specific Neutralizing Antibody-Based Cytotoxicity Assay
by Zhi Li, Bo Ma, Mengqiang Gong, Lei Guo, Lili Wang, Hua Xu and Jianwei Xie
Toxins 2024, 16(6), 237; https://doi.org/10.3390/toxins16060237 (registering DOI) - 23 May 2024
Abstract
Ricin and abrin are highly potent plant-derived toxins, categorized as type II ribosome-inactivating proteins. High toxicity, accessibility, and the lack of effective countermeasures make them potential agents in bioterrorism and biowarfare, posing significant threats to public safety. Despite the existence of many effective [...] Read more.
Ricin and abrin are highly potent plant-derived toxins, categorized as type II ribosome-inactivating proteins. High toxicity, accessibility, and the lack of effective countermeasures make them potential agents in bioterrorism and biowarfare, posing significant threats to public safety. Despite the existence of many effective analytical strategies for detecting these two lethal toxins, current methods are often hindered by limitations such as insufficient sensitivity, complex sample preparation, and most importantly, the inability to distinguish between biologically active and inactive toxin. In this study, a cytotoxicity assay was developed to detect active ricin and abrin based on their potent cell-killing capability. Among nine human cell lines derived from various organs, HeLa cells exhibited exceptional sensitivity, with limits of detection reaching 0.3 ng/mL and 0.03 ng/mL for ricin and abrin, respectively. Subsequently, toxin-specific neutralizing monoclonal antibodies MIL50 and 10D8 were used to facilitate the precise identification and differentiation of ricin and abrin. The method provides straightforward and sensitive detection in complex matrices including milk, plasma, coffee, orange juice, and tea via a simple serial-dilution procedure without any complex purification and enrichment steps. Furthermore, this assay was successfully applied in the unambiguous identification of active ricin and abrin in samples from OPCW biotoxin exercises. Full article
(This article belongs to the Special Issue Multi Methods for Detecting Natural Toxins)
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16 pages, 4808 KiB  
Article
Exploring Seasonal Variations in Fish Communities: A Study of the Yellow River Estuary and Its Adjacent Waters Using eDNA and Trawl Surveys
by Xiaoyang Wang, Fan Li, Fei Shao, Hongjun Song, Na Song, Xiaomin Zhang and Linlin Zhao
Fishes 2024, 9(6), 192; https://doi.org/10.3390/fishes9060192 (registering DOI) - 23 May 2024
Abstract
The Yellow River Estuary and its adjacent waters serve as crucial spawning, foraging, and nursery areas for marine organisms, possessing abundant biological resources. Monitoring fish communities provides a baseline for implementing the sustainable utilization of marine resources. In this study, data were collected [...] Read more.
The Yellow River Estuary and its adjacent waters serve as crucial spawning, foraging, and nursery areas for marine organisms, possessing abundant biological resources. Monitoring fish communities provides a baseline for implementing the sustainable utilization of marine resources. In this study, data were collected from 15 spring surface and bottom sites and 17 summer surface sites using eDNA and trawl surveys. The results showed that 37, 40, and 35 fish species were detected using eDNA in the spring (surface and bottom) and summer (surface), respectively, with 38 fish species caught during summer trawling. The dominant species mainly belonged to Engraulidae of Clupeiformes in the spring and Gobiidae of Perciformes in the summer, characterized by smaller-sized, short-lived, and pelagic fish species. The summer surface communities exhibited higher diversity than the spring surface and bottom communities. NMDS analysis revealed a degree of seasonal differences in fish communities and that there may be a lack of vertical stratification in the spring communities. The pH and DO were identified as the key environmental factors affecting the fish community. Additionally, the combination of eDNA and trawl surveys was regarded as a superior survey method. Our study provides valuable information for understanding seasonal fish communities in the Yellow River Estuary and its adjacent waters, contributing to fishery resource management and conservation in the region. Full article
(This article belongs to the Special Issue Assessment and Management of Fishery Resources)
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9 pages, 501 KiB  
Article
Maternal Hypertriglyceridemia in Gestational Diabetes: A New Risk Factor?
by Francisca Marques Puga, Diana Borges Duarte, Vânia Benido Silva, Maria Teresa Pereira, Susana Garrido, Joana Vilaverde, Marta Sales Moreira, Fernando Pichel, Clara Pinto and Jorge Dores
Nutrients 2024, 16(11), 1577; https://doi.org/10.3390/nu16111577 (registering DOI) - 23 May 2024
Abstract
Elevated maternal triglycerides (TGs) have been associated with excessive fetal growth. However, the role of maternal lipid profile is less studied in gestational diabetes mellitus (GDM). We aimed to study the association between maternal lipid profile in the third trimester and the risk [...] Read more.
Elevated maternal triglycerides (TGs) have been associated with excessive fetal growth. However, the role of maternal lipid profile is less studied in gestational diabetes mellitus (GDM). We aimed to study the association between maternal lipid profile in the third trimester and the risk for large-for-gestational-age (LGA) newborns in women with GDM. We performed an observational and retrospective study of pregnant women with GDM who underwent a lipid profile measurement during the third trimester. We applied a logistic regression model to assess predictors of LGA. A total of 100 singleton pregnant women with GDM and third-trimester lipid profile evaluation were included. In the multivariate analysis, pre-pregnancy BMI (OR 1.19 (95% CI 1.03–1.38), p = 0.022) and hypertriglyceridemia (OR 7.60 (1.70–34.10), p = 0.008) were independently associated with LGA. Third-trimester hypertriglyceridemia was found to be a predictor of LGA among women with GDM, independently of glycemic control, BMI, and pregnancy weight gain. Further investigation is needed to confirm the role of TGs in excessive fetal growth in GDM pregnancies. Full article
(This article belongs to the Section Lipids)
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11 pages, 3256 KiB  
Article
FungiRegEx: A Tool for Pattern Identification in Fungal Proteomic Sequences Using Regular Expressions
by Victor Terrón-Macias, Jezreel Mejia, Miguel Angel Canseco-Pérez, Mirna Muñoz and Miguel Terrón-Hernández
Appl. Sci. 2024, 14(11), 4429; https://doi.org/10.3390/app14114429 (registering DOI) - 23 May 2024
Abstract
In the context of proteomic-scale research, it is imperative to automatically analyze numerous species and subspecies to discern distinctive characteristics present in multiple species of the fungi kingdom that contain sequences of interest that could fulfill a specific biological function. To achieve this, [...] Read more.
In the context of proteomic-scale research, it is imperative to automatically analyze numerous species and subspecies to discern distinctive characteristics present in multiple species of the fungi kingdom that contain sequences of interest that could fulfill a specific biological function. To achieve this, complex sequences must be recognized within an organism’s entire set of proteomes. Our study presents FungiRegEx, a piece of software that facilitates the identification of regular expressions of proteomes of fungal organisms and uses real-time data retrieval of the different species from the JGI Mycocosm database without the need to download any file. Integrating a graphical user interface that makes it easy to use, the tool offers regular expression searches on 2402 fungal species from the JGI Mycocosm portal. The tool was validated with the AXSXG sequence and the RXRL effector, demonstrating the effectiveness of FungiRegEx in identifying user-defined patterns in the recovered sequences. This tool allows customization and filtering, and it can save results if required, combining speed, adaptability, and ease of use. It provides an experience without a console and programming, displaying the results in a GUI and making them easier to read. Its architecture guarantees optimized use of resources, time consumption, and implementation flexibility, allowing the customization of specific software parameters for resource management. The tool’s potential for future research and exploration is emphasized, providing a nuanced perspective on its practical use within the fungal genomics community. The tools are available at the addresses mentioned in the text. Full article
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14 pages, 2681 KiB  
Article
Identification of S-RNase Genotypes of 65 Almond [Prunus dulcis (Mill.) D.A. Webb] Germplasm Resources and Close Relatives
by Panyun Xu, Lirong Wang, Xinwei Wang, Yeting Xu, Yarmuhammat Ablitip, Chunmiao Guo and Mubarek Ayup
Horticulturae 2024, 10(6), 545; https://doi.org/10.3390/horticulturae10060545 (registering DOI) - 23 May 2024
Abstract
Self-incompatibility (SI) systems in plants prevent self-pollination and mating among relatives, enhancing genetic diversity in nature but posing challenges in almond production and breeding. S-allele composition alongside the flowering periods of these cultivars enables the anticipation of cross-compatibility and optimal cultivar combinations for [...] Read more.
Self-incompatibility (SI) systems in plants prevent self-pollination and mating among relatives, enhancing genetic diversity in nature but posing challenges in almond production and breeding. S-allele composition alongside the flowering periods of these cultivars enables the anticipation of cross-compatibility and optimal cultivar combinations for the allocation of pollinating trees in production. In the current study, 65 materials containing 61 almond (Prunus dulcis) germplasm resources, of which two were hybrids and the remaining four were peach (Prunus persica) germplasms, were used for the S-RNase genotype. The results showed that 55 genomic samples were amplified by PCR to obtain double-banded types, which identified their complete S-RNase genotypes, while the rest of the samples amplified only a single band, identifying one S-RNase gene in the S gene. A total of 30 S-RNase genes were identified in Prunus dulcis, Prunus webbii, Prunus persica, Prunus armeniaca, Prunus salicina, and Prunus cerasifera. Sequence analysis revealed polymorphisms spanning from 313 to 2031 bp within the amplified fragment sequence. The S57-RNase gene exhibited the highest frequency at 31.75% among the identified materials, with S1S57, S10S57, and S7S57 being the predominant S genotypes. A new S-RNase gene, named S65, was identified with a sequencing length of 1483 bp. Its deduced amino acid sequence shared 98.24% similarity with the amino acid sequence of the S-RNase gene on GenBank, with the highest homology. Furthermore, according to the findings, 65 materials belong to eight S genotype cross-incompatibility groups (CIG) and one semi-compatibility or compatibility group (0). Among them, most of the seven main almond germplasm resources and 35 cultivars can be cross-pollinated. The results of the study can lay the foundation for pollinator tree allocation and breeding hybrid parent selection in almond production. Full article
(This article belongs to the Special Issue Advances in Developmental Biology in Tree Fruit and Nut Crops)
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11 pages, 3386 KiB  
Article
Partial Deployment to Save Space for Vessel Cannulation When Treating Complex Aortic Aneurysms with Narrow Paravisceral Lumen Is Also Feasible Using Inner-Branched Pre-Cannulated Endografts
by Gioele Simonte, Emanuele Gatta, Vincenzo Vento, Gianbattista Parlani, Rachele Simonte, Luca Montecchiani and Giacomo Isernia
J. Clin. Med. 2024, 13(11), 3060; https://doi.org/10.3390/jcm13113060 (registering DOI) - 23 May 2024
Abstract
Introduction: The aim of this paper is to propose a sequential deployment technique for the E-nside off-the-shelf endograft that could potentially enhance target visceral vessel (TVV) cannulation and overstenting in narrow aortic anatomies. Methods: All data regarding patients consecutively treated in two aortic [...] Read more.
Introduction: The aim of this paper is to propose a sequential deployment technique for the E-nside off-the-shelf endograft that could potentially enhance target visceral vessel (TVV) cannulation and overstenting in narrow aortic anatomies. Methods: All data regarding patients consecutively treated in two aortic centers with the E-nside graft employing the partial deployment technique were included in the study cohort and analyzed. To execute the procedure with partial endograft deployment, the device should be prepared before insertion by advancing, under fluoroscopy, all four dedicated 400 cm long 0.018″ non-hydrophilic guidewires until their proximal ends reach the cranial graft’s edge. Anticipating this guidewire placement prevents the inability to do so once the endograft is partially released, avoiding potentially increased friction inside the constricted pre-loaded microchannels. The endograft is then advanced and deployed in the standard fashion, stopping just after the inner branch outlets are fully expanded. Tip capture is released, and the proximal end of the device is opened. Visceral vessel bridging is completed from an upper access in the desired sequence, and the graft is fully released after revascularizing one or more arteries. Preventing the distal edge of the graft from fully expanding improves visceral vessel cannulation and bridging component advancement, especially when dealing with restricted lumina. Results: A total of 26 patients were treated during the period December 2019–March 2024 with the described approach. Procedure was performed in urgent settings in 14/26 cases. The available lumen was narrower than 24 mm at the origin of at least one target vessel in 11 out of 26 cases performed (42.3%). Technical success was obtained in 24 out of 26 cases (92.3%), with failures being due to TVVs loss. No intraoperative death or surgical conversion was recorded, and no early reintervention was needed in the perioperative period. Clinical success at 30 days was therefore 80.7%. Conclusions: The described technique could be considered effective in saving space outside of the graft, allowing for safe navigation and target vessel cannulation in narrow visceral aortas, similar to what has already been reported for outer-branched endografts. Full article
(This article belongs to the Special Issue State-of-the-Art in Invasive Vascular Interventions)
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13 pages, 12707 KiB  
Article
Facile Recycling of Waste Biomass for Preparation of Hierarchical Porous Carbon with High-Performance Electromagnetic Wave Absorption
by Yihui Zhou, Jingjing He, Jiafu Hong, Haihe Xie and Xuexia Lin
Molecules 2024, 29(11), 2455; https://doi.org/10.3390/molecules29112455 (registering DOI) - 23 May 2024
Abstract
Hierarchical-porous-structured materials have been widely used in the field of electromagnetic wave (EMW) absorption, playing a critical role in minimizing EMW interference and pollution. High-quality EMW absorbers, characterized by a lower thickness, lighter weight, wider absorption band, and stronger absorption capacity, have been [...] Read more.
Hierarchical-porous-structured materials have been widely used in the field of electromagnetic wave (EMW) absorption, playing a critical role in minimizing EMW interference and pollution. High-quality EMW absorbers, characterized by a lower thickness, lighter weight, wider absorption band, and stronger absorption capacity, have been instrumental in reducing damage and preventing malfunctions in the automotive and aviation industries. The utilization of discarded nut shells through recycling can not only alleviate environmental problems but relieve resource constraints. Herein, a facile method for the preparation of hierarchical porous biomass carbon derived from abandoned Xanthoceras Sorbifolium Bunge Shell (XSS) biomass was developed for high-performance EMW absorption. The porous structures of XSS biochar were studied by using different levels of the K2CO3 activator and simple carbonization. The effect of K2CO3 on the EMW parameters, including the complex permittivity, complex permeability, polarization relaxation, and impedance matching, was analyzed. The best EMW absorption performance of the XSS biochar was observed at a mass ratio of activator-to-biomass of 2:1. A minimum reflection loss (RLmin) of −38.9 dB was achieved at 9.12 GHz, and a maximum effective absorption bandwidth (EABmax) of up to 3.28 GHz (14.72~18.0 GHz) could be obtained at a 1.8 mm thickness. These results demonstrated that hierarchical porous XSS carbon was prepared successfully. Simultaneously, the prepared XSS biochar was confirmed as a potential and powerfully attractive EMW-absorbing material. The proposal also provided a simple strategy for the development of a green, low-cost, and sustainable biochar as a lightweight high-performance absorbing material. Full article
(This article belongs to the Section Materials Chemistry)
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13 pages, 4622 KiB  
Article
In Situ-Initiated Poly-1,3-dioxolane Gel Electrolyte for High-Voltage Lithium Metal Batteries
by Mingyang Xin, Yimu Zhang, Zhenhua Liu, Yuqing Zhang, Yutong Zhai, Haiming Xie and Yulong Liu
Molecules 2024, 29(11), 2454; https://doi.org/10.3390/molecules29112454 (registering DOI) - 23 May 2024
Abstract
To realize high-energy-density Li metal batteries at low temperatures, a new electrolyte is needed to solve the high-voltage compatibility and fast lithium-ion de-solvation process. A gel polymer electrolyte with a small-molecular-weight polymer is widely investigated by combining the merits of a solid polymer [...] Read more.
To realize high-energy-density Li metal batteries at low temperatures, a new electrolyte is needed to solve the high-voltage compatibility and fast lithium-ion de-solvation process. A gel polymer electrolyte with a small-molecular-weight polymer is widely investigated by combining the merits of a solid polymer electrolyte (SPE) and liquid electrolyte (LE). Herein, we present a new gel polymer electrolyte (P-DOL) by the lithium difluoro(oxalate)borate (LiDFOB)-initiated polymerization process using 1,3-dioxolane (DOL) as a monomer solvent. The P-DOL presents excellent ionic conductivity (1.12 × 10−4 S cm−1) at −20 °C, with an oxidation potential of 4.8 V. The Li‖LiCoO2 cell stably cycled at 4.3 V under room temperature, with a discharge capacity of 130 mAh g−1 at 0.5 C and a capacity retention rate of 86.4% after 50 cycles. Moreover, a high-Ni-content LiNi0.8Co0.1Mn0.1O2 (NCM811) cell can steadily run for 120 cycles at −20 °C, with a capacity retention of 88.4%. The underlying mechanism of high-voltage compatibility originates from the dense and robust B- and F-rich cathode interface layer (CEI) formed at the cathode interface. Our report will shed light on the real application of Li metal batteries under all-climate conditions in the future. Full article
(This article belongs to the Special Issue Exclusive Feature Papers in Electrochemistry)
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17 pages, 5117 KiB  
Article
Combined Pretreatment with Bioequivalent Doses of Plant Growth Regulators Alleviates Dehydration Stress in Lactuca sativa
by Irina I. Vaseva, Iskren Sergiev, Dessislava Todorova, Martynas Urbutis, Giedrė Samuolienė and Lyudmila Simova-Stoilova
Horticulturae 2024, 10(6), 544; https://doi.org/10.3390/horticulturae10060544 (registering DOI) - 23 May 2024
Abstract
Plant hormones regulate adaptive responses to various biotic and abiotic stress factors. Applied exogenously, they trigger the natural plant defense mechanisms, a feature that could be implemented in strategies for supporting crop resilience. The potential of the exogenous cytokinin-like acting compound (kinetin), the [...] Read more.
Plant hormones regulate adaptive responses to various biotic and abiotic stress factors. Applied exogenously, they trigger the natural plant defense mechanisms, a feature that could be implemented in strategies for supporting crop resilience. The potential of the exogenous cytokinin-like acting compound (kinetin), the auxin analogue 1-naphtyl acetic acid (NAA), abscisic acid (ABA) and the ethyleneprecursor 1-aminocyclopropane-1-carboxylic acid (ACC) to mitigate dehydration was tested on Lactuca sativa (lettuce) grown on 12% polyethylene glycol (PEG). Priming with different blends containing these plant growth regulators (PGRs) applied in bioequivalent concentrations was evaluated through biometric measurements and biochemical analyses. The combined treatment with the four compounds exhibited the best dehydration protective effect. The antioxidative enzyme profiling of the PGR-primed individuals revealed increased superoxide dismutase (SOD), catalase and peroxidase activity in the leaves. Immunodetection of higher levels of the rate-limiting enzyme for proline biosynthesis (delta-pyroline-5-carboxylate synthase) in the primed plants coincided with a significantly higher content of the amino acid measured in the leaves. These plants also accumulated particular dehydrin types, which may have contributed to the observed stress-relieving effect. The four-component mix applied by spraying or through the roots exerted similar stress-mitigating properties on soil-grown lettuce subjected to moderate drought. Full article
(This article belongs to the Special Issue Horticultural Production under Drought Stress)
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