The 2023 MDPI Annual Report has
been released!
 
18 pages, 1721 KiB  
Article
Sequence Alignment between TRIM33 Gene and Human Noncoding RNAs: A Potential Explanation for Paraneoplastic Dermatomyositis
by Rossella Talotta
J. Pers. Med. 2024, 14(6), 628; https://doi.org/10.3390/jpm14060628 (registering DOI) - 13 Jun 2024
Abstract
Background: This computational analysis investigated sequence complementarities between the TRIM33 gene and human noncoding (nc)RNAs and characterized their interactions in the context of paraneoplastic dermatomyositis. Methods: TRIM33 FASTA sequence (NCBI Reference Sequence: NC_000001.11) was used for BLASTN analysis against Human GRCh38 in the [...] Read more.
Background: This computational analysis investigated sequence complementarities between the TRIM33 gene and human noncoding (nc)RNAs and characterized their interactions in the context of paraneoplastic dermatomyositis. Methods: TRIM33 FASTA sequence (NCBI Reference Sequence: NC_000001.11) was used for BLASTN analysis against Human GRCh38 in the Ensembl.org database. Retrieved ncRNAs showing hits to TRIM33 were searched in the GeneCards.org database and further analyzed through RNAInter, QmRLFS-finder, Spliceator, and NcPath enrichment analysis. Results: A total of 100 hits were found, involving the lncRNAs NNT-AS1, MKLN1-AS, LINC01206, and PAXBP1-AS1, whose dysregulation has been reported in either cancer or dermatomyositis. Additionally, the lncRNAs NNT-AS1 and PAXBP1-AS1 may interact with microRNA-142-3p, reducing its expression and increasing that of TRIM33. Sequence complementarity affected only TRIM33 intron 1, possibly resulting in alternatively spliced isoforms of TIF1γ with increased immunogenicity. The results also revealed nucleotide alignment between TRIM33 and the gene regulatory elements of 28 ncRNA genes involved in immune pathways. Conclusions: This pivotal study demonstrates sequence complementarity between TRIM33 and human ncRNAs dysregulated in cancer and dermatomyositis. This scenario may lead to the overproduction of more immunogenic TIF1γ variants in tumors and the stimulation of autoimmunity. Further experimental analyses using targeted methods such as Western blot or Chip-Seq are required to confirm these data. Full article
(This article belongs to the Special Issue Current Trends and Future Challenges in Rheumatology)
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14 pages, 5820 KiB  
Article
The Gradient Variation of Location Distribution, Cross-Section Area, and Mechanical Properties of Moso Bamboo Vascular Bundles along the Radial Direction
by Hongbo Li, Qipeng Zhu, Pengchen Lu, Xi Chen and Yu Xian
Forests 2024, 15(6), 1023; https://doi.org/10.3390/f15061023 (registering DOI) - 13 Jun 2024
Abstract
Bamboo is a typical natural fiber-reinforced composite with excellent mechanical properties, which are determined by its special micro-structure. As the reinforcing phase, the vascular bundles play a central role in the control of the mechanical properties of bamboo macro-structure. To find the exact [...] Read more.
Bamboo is a typical natural fiber-reinforced composite with excellent mechanical properties, which are determined by its special micro-structure. As the reinforcing phase, the vascular bundles play a central role in the control of the mechanical properties of bamboo macro-structure. To find the exact gradient variation of the mechanical properties of these continuously distributed vascular bundles within the bamboo culm, 4-year-old Moso bamboo was chosen to investigate the variation of locate-distribution, cross-section area, and mechanical properties of single vascular bundles along the longitudinal and radial directions with respect to their location from the base, middle, and top sections of bamboo culm, respectively. It shows that the spatial distribution of vascular bundles along the column is distributed exponentially from the inside to the outside of the culm. The cross-section area of the vascular bundles decreased exponentially from the inside to the outside along the radial direction. All the vascular bundles were then carefully separated from bamboo strips and tested via the tensile tests. Test results show that the longitudinal tensile strengths of vascular bundles ranged from 180.44 to 774.10 MPa, and the longitudinal Young’s modulus ranged from 9.00 to 44.76 GPa. The tensile strength of vascular bundles at the outer side was three times higher than that of the inner side, while Young’s modulus at the outer side was three to four times higher than that of the inner side. For all three height positions, the strengths and Young’s modulus of vascular bundles are all exponentially increased from the inner side to the outer side along the radial direction. This work will provide a basis for the highly processed product’s application of bamboo resources and a reference for further study on the trans-scale analysis of the mechanical properties of bamboo. Full article
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10 pages, 208 KiB  
Article
The Relationship between Adult Attachment Style and Perceived Knowledge of Partner Sex History among University Students
by Victoria Martins Mendonca, Jennifer Lasenby-Lessard and Adam Davies
Sexes 2024, 5(2), 101-110; https://doi.org/10.3390/sexes5020008 (registering DOI) - 13 Jun 2024
Abstract
Research has extensively studied adult attachment theory, a fundamental psychological framework, particularly regarding its implications for adult attachment and sexual dynamics. The previous literature has established relationships between adult attachment and various sexual behaviours as well as communication patterns. Specifically, individuals with secure [...] Read more.
Research has extensively studied adult attachment theory, a fundamental psychological framework, particularly regarding its implications for adult attachment and sexual dynamics. The previous literature has established relationships between adult attachment and various sexual behaviours as well as communication patterns. Specifically, individuals with secure attachment styles typically engage in open communication and cautious sexual behaviours, whereas individuals with anxious or avoidant attachment styles exhibit less sexual communication and engage in riskier sexual activities. That said, limited research has explored the relationship between adult attachment style and perceived knowledge regarding partner sex history. This study aimed to fill this gap by investigating how adult attachment style relates to perceived knowledge about partner sexual experiences. A sample of 237 undergraduate students completed surveys assessing attachment style and their perceived awareness of their partner’s sexual past. Attachment style was evaluated using the Revised Adult Attachment Scale (RAAS) and perceived knowledge was measured using the Partner Sexual History Scale (PSHS). The results indicated a significant correlation between adult attachment style and perceived knowledge of a partner’s sexual history. Specifically, individuals with secure and avoidant attachment styles demonstrated greater perceived awareness of their partner’s sexual experiences compared to those with an anxious attachment style. This research contributes to our comprehension of the complex interplay among adult attachment, sexual knowledge, sexual communication, and relationship dynamics in young adult populations. Full article
(This article belongs to the Section Sexual Behavior and Attitudes)
11 pages, 1910 KiB  
Article
Use of Yolo Detection for 3D Pose Tracking of Cardiac Catheters Using Bi-Plane Fluoroscopy
by Sara Hashemi, Mohsen Annabestani, Mahdie Aghasizade, Amir Kiyoumarsioskouei, S. Chiu Wong and Bobak Mosadegh
AI 2024, 5(2), 887-897; https://doi.org/10.3390/ai5020044 (registering DOI) - 13 Jun 2024
Abstract
The increasing rate of minimally invasive procedures and the growing prevalence of cardiovascular disease have led to a demand for higher-quality guidance systems for catheter tracking. Traditional methods for catheter tracking, such as detection based on single points and applying masking techniques, have [...] Read more.
The increasing rate of minimally invasive procedures and the growing prevalence of cardiovascular disease have led to a demand for higher-quality guidance systems for catheter tracking. Traditional methods for catheter tracking, such as detection based on single points and applying masking techniques, have been limited in their ability to provide accurate pose information. In this paper, we propose a novel deep learning-based method for catheter tracking and pose detection. Our method uses a Yolov5 bounding box neural network with postprocessing to perform landmark detection in four regions of the catheter: the tip, radio-opaque marker, bend, and entry point. This allows us to track the catheter’s position and orientation in real time, without the need for additional masking or segmentation techniques. We evaluated our method on a dataset of fluoroscopic images from two distinct datasets and achieved state-of-the-art results in terms of accuracy and robustness. Our model was able to detect all four landmark features (tip, marker, bend, and entry) used to generate a pose for a catheter with 0.285 ± 0.143 mm, 0.261 ± 0.138 mm, 0.424 ± 0.361 mm, and 0.235 ± 0.085 mm accuracy. We believe that our method has the potential to significantly improve the accuracy and efficiency of catheter tracking in medical procedures that utilize bi-plane fluoroscopy guidance. Full article
(This article belongs to the Section Medical & Healthcare AI)
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12 pages, 2935 KiB  
Article
Polarization-Dependent Plasmon Coupling in Gold Nanoparticles and Gold Thin-Film Systems
by Feng Shan, Yanyan Zhu and Jingyi Huang
Coatings 2024, 14(6), 746; https://doi.org/10.3390/coatings14060746 (registering DOI) - 13 Jun 2024
Abstract
The characteristics of gap plasmon formed by nanoparticle-on-mirror (NPOM) structures composed of metal nanoparticles (MNPs) and metal thin films have aroused interest for use in various optoelectronic devices. The resonance enhancement characteristics in the gap region of an NPOM structure composed of gold [...] Read more.
The characteristics of gap plasmon formed by nanoparticle-on-mirror (NPOM) structures composed of metal nanoparticles (MNPs) and metal thin films have aroused interest for use in various optoelectronic devices. The resonance enhancement characteristics in the gap region of an NPOM structure composed of gold nanoparticles and gold thin films are simulated theoretically by the finite element method (FEM). The resonant spectrum obtained by the internal coupling effect of the gap can be flexibly controlled by the polarization of incident light and the thickness of the dielectric layer between the MNPs and the metal thin films. We study the resonance spectra of polarization-dependent gold ellipsoidal nanoparticles (GENPs) and gold thin films in the gap region of an NPOM structure. The GENPs and gold thin films are separated by a dielectric layer with a refractive index of 1.36. We observe that the intensity of the resonance electric field in the gap region is inversely proportional to the polarization angle. Similarly, the intensity of the local electric field resonance peak in the gap region is inversely proportional to the thickness of the dielectric layer. When the thickness of the dielectric layer is 0.3 nm and the polarization angle is 0°, the best resonant electric field intensity of 2200 V/m is obtained in the gap region of the NPOM structure (the power of incident light is 1 mW). Finally, the resonant peak wavelength of the electric field in the gap region of the NPOM structure is also controlled by the polarization angle of the incident light and the thickness of the dielectric layer. Full article
(This article belongs to the Special Issue Thin-Film Synthesis, Characterization and Properties)
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12 pages, 2694 KiB  
Article
A Methodology to Determine Undercutting Height in Block/Panel Caving
by Danko Morales, Raúl Castro and René Gómez
Mining 2024, 4(2), 417-428; https://doi.org/10.3390/mining4020024 (registering DOI) - 13 Jun 2024
Abstract
The undercutting process is a technique employed to initiate the caving of the ore mass in block caving, achieved by creating a basal cut on the block scheduled to be submerged. The effective execution of the undercutting process involves numerous variables, such as [...] Read more.
The undercutting process is a technique employed to initiate the caving of the ore mass in block caving, achieved by creating a basal cut on the block scheduled to be submerged. The effective execution of the undercutting process involves numerous variables, such as the undercut height and the vertical section’s undercut geometry, whose influence has often been overlooked. This research presents a methodology for determining the undercut height in a post-undercutting scenario, including variables such as the undercut level design, the extraction level design, and the air gap. Integral to this methodology is a parameterization that estimates the undercut height, from which design abacuses can be created to aid the assessment of present and future operations for any block/panel caving operation that employs the post-undercutting variant. Additionally, two examples demonstrate the application of this methodology, revealing how alterations in the dimensions of the crown pillar and drawbells significantly influence the undercut height. The calculation methodology outlined in this document delivers an undercutting height, providing an evaluation methodology for ongoing operations. Consequently, any height exceeding this suggests a conservative approach, potentially offering an opportunity for design improvement and alignment with the described parameters. Full article
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10 pages, 2011 KiB  
Communication
Cytotoxic Pentaketide-Sesquiterpenes from the Marine-Derived Fungus Talaromyces variabilis M22734
by Lingzhi Tang, Jinmei Xia, Zhongwei Chen, Xiaohui Wu, Guangyu Li, Qiliang Lai, Zongze Shao, Weiyi Wang and Xuan Hong
Mar. Drugs 2024, 22(6), 274; https://doi.org/10.3390/md22060274 (registering DOI) - 13 Jun 2024
Abstract
Talaromyces, a filamentous fungus widely distributed across terrestrial and marine environments, can produce a diverse array of natural products, including alkaloids, polyketones, and polyketide-terpenoids. Among these, chrodrimanins represented a typical class of natural products. In this study, we isolated three previously undescribed [...] Read more.
Talaromyces, a filamentous fungus widely distributed across terrestrial and marine environments, can produce a diverse array of natural products, including alkaloids, polyketones, and polyketide-terpenoids. Among these, chrodrimanins represented a typical class of natural products. In this study, we isolated three previously undescribed pentaketide-sesquiterpenes, 8,9-epi-chrodrimanins (13), along with eight known compounds (411). The structures of compounds 13 were elucidated using nuclear magnetic resonance (NMR) and mass spectrometry (MS), while their absolute configurations were determined through X-ray crystallography and electronic circular dichroism (ECD) computations. The biosynthetic pathways of compounds 13 initiate with 6-hydroxymellein and involve multiple stages of isoprenylation, cyclization, oxidation, and acetylation. We selected four strains of gastrointestinal cancer cells for activity evaluation. We found that compound 3 selectively inhibited MKN-45, whereas compounds 1 and 2 exhibited no significant inhibitory activity against the four cell lines. These findings suggested that 8,9-epi-chrodrimanins could serve as scaffold compounds for further structural modifications, potentially leading to the development of targeted therapies for gastric cancer. Full article
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13 pages, 811 KiB  
Article
An Exploration of the Gastronomic Potential of the North American Pawpaw—A Case Study from the Pawpaw Cookoff at the Ohio Pawpaw Festival
by Robert Brannan and Ronald Powell
Gastronomy 2024, 2(2), 89-101; https://doi.org/10.3390/gastronomy2020007 (registering DOI) - 13 Jun 2024
Abstract
The pawpaw (Asimina triloba) is a tropical-tasting fruit from a tree indigenous to North America’s temperate climates. Pawpaw has a sweet, sour, and often bitter taste, which is a combination of banana and mango flavor. Fresh fruits are rarely available for [...] Read more.
The pawpaw (Asimina triloba) is a tropical-tasting fruit from a tree indigenous to North America’s temperate climates. Pawpaw has a sweet, sour, and often bitter taste, which is a combination of banana and mango flavor. Fresh fruits are rarely available for retail purchase other than at farm sales or farmers’ markets. Frozen pulp is commercially available but supply is often limited due to increased wholesale demand. The purpose of this paper is to analyze seven years of entries from the Pawpaw Cookoff at the Ohio Pawpaw Festival using case study methodology to provide a basis from which to track trends, make recommendations, and discuss gastronomic opportunities of the pawpaw. Analysis of the data indicates that pawpaw is a versatile fruit that has been incorporated into a wide variety of beverages, savories, sauces, condiments, sweets, and desserts. Pawpaw pairs well with both alcoholic and non-alcoholic beverages, especially certain ales, sour beers, innovative cocktails with rum, coffee and tea drinks, and smoothies. Pawpaw is easily incorporated directly into salsas, dips, salad dressings, and frozen desserts that do not require cooking. In cooked savory dishes, sauces, and condiments, pawpaw should be added at the end of preparation. Pawpaw can be used in a wide range of baked and fried sweets and desserts. Full article
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4 pages, 616 KiB  
Editorial
Strategic Planning of Urban Green Space at Large Spatiotemporal Scales
by Yuncai Wang
Forests 2024, 15(6), 1022; https://doi.org/10.3390/f15061022 (registering DOI) - 13 Jun 2024
Abstract
Urban green spaces play a crucial role in enhancing the quality of life by providing ecological, social, and economic benefits [...] Full article
10 pages, 3779 KiB  
Brief Report
Modified Tension Band Wiring Using Only Non-Absorbable Braided Polyblend Sutures for the Treatment of Patellar Fractures
by Annalisa Itro, Annalisa De Cicco, Gianluca Conza, Luca Schiavo, Niccolò Garofalo, Adriano Braile, Francesco Nappi and Giuseppe Toro
Surg. Tech. Dev. 2024, 13(2), 227-236; https://doi.org/10.3390/std13020015 (registering DOI) - 13 Jun 2024
Abstract
Patellar fractures represent approximately 1% of all fractures and the pattern is influenced by the quality of the bone and the energy of the trauma. Transverse fractures are associated with extensor mechanism failure and interruption of joint congruence. Patellar fractures are generally fixed [...] Read more.
Patellar fractures represent approximately 1% of all fractures and the pattern is influenced by the quality of the bone and the energy of the trauma. Transverse fractures are associated with extensor mechanism failure and interruption of joint congruence. Patellar fractures are generally fixed using tension band principles, through K-wires and metal cerclage. The tension band was conceived to transform the considerable tensile force applied to the patella into a compressive one to obtain a stable fixation. The use of metal implants might be associated with a significant discomfort, mostly related to the irritating action of K-wires and cerclage on the surrounding soft tissues, often leading to the need for implant removal. Therefore, we introduced an original technique for fix patellar fractures by using only a non-adsorbable braided polyblend suture. Postoperative care included progressive range of motion recovery using an articulated knee brace and a specific protocol. The suture-only tension band technique seems to be a useful technique in terms of complications and reoperation rate while allowing secure and early mobilization. Full article
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8 pages, 2967 KiB  
Article
A Tunable Graphene Superlattice with Deformable Periodical Nano-Gating
by Binbin Wei, Haosong Ying, Junrong Chen, Qing Zang, Jiduo Dong, Hao Zhang, Yang Liu and Chunheng Liu
Nanomaterials 2024, 14(12), 1019; https://doi.org/10.3390/nano14121019 (registering DOI) - 13 Jun 2024
Abstract
Graphene superlattices have simple and controllable electronic band structures, which can also be electrostatically tuned. They have been widely studied for band engineering and strong correlated physics, and have led to the discovery of a variety of exciting phenomena. To experimentally study the [...] Read more.
Graphene superlattices have simple and controllable electronic band structures, which can also be electrostatically tuned. They have been widely studied for band engineering and strong correlated physics, and have led to the discovery of a variety of exciting phenomena. To experimentally study the physics of graphene superlattices in a systematic way, it is desirable to control the structure parameters, which barely exist at the moment, onsite. Here, a tunable superlattice with graphene and a deformable gating structure is demonstrated. The period and duty cycle of the nano-gating, and furthermore of the superlattice potential, can be tuned through altering the shape of the gating structure with piezo-actuators, offering a tunable band structure. The tuning of the electronic band structures of both a two-dimensional and a one-dimensional superlattice is demonstrated with numerical simulations, offering a new approach for tunable electronic and photonic devices. Full article
(This article belongs to the Special Issue Graphene-Based Nanomaterials II)
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16 pages, 601 KiB  
Article
Assessing China’s Sustainable Development of ICT in Education: A Delphi Approach
by Danxia Xing, Teng Zhao and Chuanbing Xie
Sustainability 2024, 16(12), 5024; https://doi.org/10.3390/su16125024 (registering DOI) - 13 Jun 2024
Abstract
The evaluation of Information and Communication Technology (ICT) in Education (ICTE) has become a crucial aspect in educational management. While previous attempts have been made to develop evaluation frameworks for ICTE, many existing frameworks fail to include information from multiple sources and are [...] Read more.
The evaluation of Information and Communication Technology (ICT) in Education (ICTE) has become a crucial aspect in educational management. While previous attempts have been made to develop evaluation frameworks for ICTE, many existing frameworks fail to include information from multiple sources and are thus not sufficiently accurate. This study aims to address this gap by identifying core dimensions and indicators from various stakeholders in ICTE practices. Accordingly, a set of guidelines for a more comprehensive evaluation of ICTE development is generated. By applying these guidelines, a Comprehensive Evaluation Framework for ICT in Education (CEF-ICTE) is developed and validated using the Delphi methodology. The results reveal that the most pertinent dimensions for ICTE evaluation are ICT infrastructure and digital resources, followed by ICT usage, personnel support, and ICT management. Key indicators identified include the average frequency of online services utilized by students per week and the percentage of schools implementing basic data applications for management purposes. These findings underscore the importance of prioritizing certain indicators in evaluating ICTE. The present study offers a valuable tool for comprehensively assessing ICTE development and may provide policymakers with essential support for setting priorities and allocating educational resources where they are most urgently needed. Full article
(This article belongs to the Section Sustainable Education and Approaches)
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11 pages, 1463 KiB  
Perspective
Therapeutic Use of G4-Ligands in Cancer: State-of-the-Art and Future Perspectives
by Sara Iachettini, Annamaria Biroccio and Pasquale Zizza
Pharmaceuticals 2024, 17(6), 771; https://doi.org/10.3390/ph17060771 (registering DOI) - 13 Jun 2024
Abstract
G-quadruplexes (G4s) are guanine-rich non-canonical secondary structures of nucleic acids that were identified in vitro almost half a century ago. Starting from the early 1980s, these structures were also observed in eukaryotic cells, first at the telomeric level and later in regulatory regions [...] Read more.
G-quadruplexes (G4s) are guanine-rich non-canonical secondary structures of nucleic acids that were identified in vitro almost half a century ago. Starting from the early 1980s, these structures were also observed in eukaryotic cells, first at the telomeric level and later in regulatory regions of cancer-related genes, in regulatory RNAs and within specific cell compartments such as lysosomes, mitochondria, and ribosomes. Because of the involvement of these structures in a large number of biological processes and in the pathogenesis of several diseases, including cancer, the interest in G4 targeting has exponentially increased in the last few years, and a great number of novel G4 ligands have been developed. Notably, G4 ligands represent a large family of heterogeneous molecules that can exert their functions by recognizing, binding, and stabilizing G4 structures in multiple ways. Regarding anti-cancer activity, the efficacy of G4 ligands was originally attributed to the capability of these molecules to inhibit the activity of telomerase, an enzyme that elongates telomeres and promotes endless replication in cancer cells. Thereafter, novel mechanisms through which G4 ligands exert their antitumoral activities have been defined, including the induction of DNA damage, control of gene expression, and regulation of metabolic pathways, among others. Here, we provided a perspective on the structure and function of G4 ligands with particular emphasis on their potential role as antitumoral agents. In particular, we critically examined the problems associated with the clinical translation of these molecules, trying to highlight the main aspects that should be taken into account during the phases of drug design and development. Indeed, taking advantage of the successes and failures, and the more recent technological progresses in the field, it would be possible to hypothesize the development of these molecules in the future that would represent a valid option for those cancers still missing effective therapies. Full article
(This article belongs to the Special Issue G‐quadruplex Ligands: Recent Advances)
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15 pages, 1802 KiB  
Review
The Role of Licorice Chalcones as Molecular Genes and Signaling Pathways Modulator—A Review of Experimental Implications for Nicotine-Induced Non-Small Cell Lung Cancer Treatment
by Naser A. Alsharairi
Curr. Issues Mol. Biol. 2024, 46(6), 5894-5908; https://doi.org/10.3390/cimb46060352 (registering DOI) - 13 Jun 2024
Abstract
Lung cancer (LC) represents the leading cause of global cancer deaths, with cigarette smoking being considered a major risk factor. Nicotine is a major hazardous compound in cigarette smoke (CS), which stimulates LC progression and non-small cell lung cancer (NSCLC) specifically through activation [...] Read more.
Lung cancer (LC) represents the leading cause of global cancer deaths, with cigarette smoking being considered a major risk factor. Nicotine is a major hazardous compound in cigarette smoke (CS), which stimulates LC progression and non-small cell lung cancer (NSCLC) specifically through activation of the nicotinic acetylcholine receptor (α7nAChR)-mediated cell-signaling pathways and molecular genes involved in proliferation, angiogenesis, and metastasis. Chalcones (CHs) and their derivatives are intermediate plant metabolites involved in flavonol biosynthesis. Isoliquiritigenin (ILTG), licochalcone A–E (LicoA–E), and echinatin (ECH) are the most common natural CHs isolated from the root of Glycyrrhiza (also known as licorice). In vitro and/or vivo experiments have shown that licorice CHs treatment exhibits a range of pharmacological effects, including antioxidant, anti-inflammatory, and anticancer effects. Despite advances in NSCLC treatment, the mechanisms of licorice CHs in nicotine-induced NSCLC treatment remain unknown. Therefore, the aim of this paper is to review experimental studies through the PubMed/Medline database that reveal the effects of licorice CHs and their potential mechanisms in nicotine-induced NSCLC treatment. Full article
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13 pages, 2149 KiB  
Article
LIM Zinc Finger Domain Containing 1 Risk Genotype of Recipient Is Associated with Renal Tubular Inflammation in Kidney Transplantation
by Yasar Caliskan, Yasemin Ozluk, Kento Kurashima, Safak Mirioglu, Ahmet Burak Dirim, Ozge Hurdogan, Ozgur Akin Oto, Marzena Syn, Mustafa Nazzal, Ajay Jain, John Edwards, Halil Yazici and Krista L. Lentine
Genes 2024, 15(6), 773; https://doi.org/10.3390/genes15060773 (registering DOI) - 13 Jun 2024
Abstract
Background: Homozygosity for LIMS1 rs893403-GG genotype is linked to an increased risk of allograft rejection after kidney transplantation. Ischemia-reperfusion of the kidney allograft leads to long term infiltration of activated and effector-memory T lymphocytes and resulting in rejection and long-term fibrosis. However, the genotype, [...] Read more.
Background: Homozygosity for LIMS1 rs893403-GG genotype is linked to an increased risk of allograft rejection after kidney transplantation. Ischemia-reperfusion of the kidney allograft leads to long term infiltration of activated and effector-memory T lymphocytes and resulting in rejection and long-term fibrosis. However, the genotype, LIMS1 expression under ischemic conditions and the long-term histopathological relationships remain ill-defined. Methods: We examined the impact of the recipient’s LIMS1-rs893403 genotype with transplant kidney histopathology. The association of the LIMS1-rs893403 genotype and LIMS1 and GCC2 mRNA expression in ischemic donor kidneys were also examined. Recipients who underwent transplant kidney biopsy were genotyped for the LIMS1-rs893403 variant and associated deletion. Histopathological findings were compared between recipients with LIMS1 risk and non-risk genotypes. Real-time PCR and immunofluorescence staining for LIMS1 and GCC2 expression were performed in non-utilized donor kidneys. Results: Demographic, clinical, and treatment characteristics and the histopathological diagnosis were similar between recipients with rs893403 GG and AA/AG genotype. The Banff tubulitis score was higher in GG recipients (n = 24) compared to AA/AG (n = 86) recipients (1.42 ± 0.65 vs. 1.12 ± 0.66, p = 0.03). Ischemic kidneys with GG showed higher LIMS1 and GCC2 mRNA expression than kidneys with AG. Kidneys with rs893403-GG had higher tubular LIMS1 and GCC2 immunohistochemical staining compared to kidneys with rs893403-AG. Conclusions: Our data supports the role of the LIMS1 locus in kidney transplant rejection, particularly in lymphocyte infiltration into the internal aspect of the tubular basement membranes. Increased LIMS1 and GCC2 expression in ischemic donor kidneys with the GG genotype require further studies. Full article
(This article belongs to the Section Human Genomics and Genetic Diseases)
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11 pages, 1195 KiB  
Article
Gastric Emptying Scintigraphy Protocol Optimization Using Machine Learning for the Detection of Delayed Gastric Emptying
by Michalis F. Georgiou, Efrosyni Sfakianaki, Monica N. Diaz-Kanelidis and Baha Moshiree
Diagnostics 2024, 14(12), 1240; https://doi.org/10.3390/diagnostics14121240 (registering DOI) - 13 Jun 2024
Abstract
Purpose: The purpose of this study is to examine the feasibility of a machine learning (ML) system for optimizing a gastric emptying scintigraphy (GES) protocol for the detection of delayed gastric emptying (GE), which is considered a primary indication for the diagnosis of [...] Read more.
Purpose: The purpose of this study is to examine the feasibility of a machine learning (ML) system for optimizing a gastric emptying scintigraphy (GES) protocol for the detection of delayed gastric emptying (GE), which is considered a primary indication for the diagnosis of gastroparesis. Methods: An ML model was developed using the JADBio AutoML artificial intelligence (AI) platform. This model employs the percent GE at various imaging time points following the ingestion of a standardized radiolabeled meal to predict normal versus delayed GE at the conclusion of the 4 h GES study. The model was trained and tested on a cohort of 1002 patients who underwent GES using a 70/30 stratified split ratio for training vs. testing. The ML software automated the generation of optimal predictive models by employing a combination of data preprocessing, appropriate feature selection, and predictive modeling analysis algorithms. Results: The area under the curve (AUC) of the receiver operating characteristic (ROC) curve was employed to evaluate the predictive modeling performance. Several models were developed using different combinations of imaging time points as input features and methodologies to achieve optimal output. By using GE values at time points 0.5 h, 1 h, 1.5 h, 2 h, and 2.5 h as input predictors of the 4 h outcome, the analysis produced an AUC of 90.7% and a balanced accuracy (BA) of 80.0% on the test set. This performance was comparable to the training set results (AUC = 91.5%, BA = 84.7%) within the 95% confidence interval (CI), demonstrating a robust predictive capability. Through feature selection, it was discovered that the 2.5 h GE value alone was statistically significant enough to predict the 4 h outcome independently, with a slightly increased test set performance (AUC = 92.4%, BA = 83.3%), thus emphasizing its dominance as the primary predictor for delayed GE. ROC analysis was also performed for single time imaging points at 1 h and 2 h to assess their independent predictiveness of the 4 h outcome. Furthermore, the ML model was tested for its ability to predict “flipping” cases with normal GE at 1 h and 2 h that became abnormal with delayed GE at 4 h. Conclusions: An AI/ML model was designed and trained for predicting delayed GE using a limited number of imaging time points in a 4 h GES clinical protocol. This study demonstrates the feasibility of employing ML for GES optimization in the detection of delayed GE and potentially shortening the protocol’s time length without compromising diagnostic power. Full article
(This article belongs to the Special Issue Intelligent Imaging in Nuclear Medicine—2nd Edition)
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8 pages, 1035 KiB  
Communication
The G-Protein-Coupled Estrogen Receptor Selective Agonist G-1 Attenuates Cell Viability and Migration in High-Grade Serous Ovarian Cancer Cell Lines
by Donia Hanafi, Rob U. Onyenwoke and K. Sean Kimbro
Int. J. Mol. Sci. 2024, 25(12), 6499; https://doi.org/10.3390/ijms25126499 (registering DOI) - 13 Jun 2024
Abstract
The G-protein-coupled estrogen receptor (GPER; G-protein-coupled estrogen receptor 30, also known as GPR30) is a novel estrogen receptor and has emerged as a promising target for ovarian cancer. GPER, a seven-transmembrane receptor, suppresses cellular viability and migration in studied ovarian cancer cells. However, [...] Read more.
The G-protein-coupled estrogen receptor (GPER; G-protein-coupled estrogen receptor 30, also known as GPR30) is a novel estrogen receptor and has emerged as a promising target for ovarian cancer. GPER, a seven-transmembrane receptor, suppresses cellular viability and migration in studied ovarian cancer cells. However, its impact on the fallopian tube, which is the potential origin of high-grade serous (HGSC) ovarian cancer, has not been addressed. This study was conducted to evaluate the relationship of GPER, ovarian cancer subtypes, i.e., high-grade serous cell lines (OV90 and OVCAR420), as well as the cell type that is the potential origin of HGSC ovarian cancer (i.e., the fallopian tube cell line FT190). The selective ligand assessed here is the agonist G-1, which was utilized in an in vitro study to characterize its effects on cellular viability and migration. As a result, this study has addressed the effect of a specific GPER agonist on cell viability, providing a better understanding of the effects of this compound on our diverse group of studied cell lines. Strikingly, attenuated cell proliferation and migration behaviors were observed in the presence of G-1. Thus, our in vitro study reveals the impact of the origin of HGSC ovarian cancers and highlights the GPER agonist G-1 as a potential therapy for ovarian cancer. Full article
(This article belongs to the Special Issue G Protein-Coupled Receptors 2023)
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13 pages, 393 KiB  
Article
Patient and Provider Attitudes and Preferences Regarding Early Palliative Care Delivery for Patients with Advanced Gastrointestinal Cancers: A Prospective Survey
by Oren Levine, Daryl Bainbridge, Gregory R. Pond, Marissa Slaven, Sukhbinder Dhesy-Thind, Jonathan Sussman and Ralph M. Meyer
Curr. Oncol. 2024, 31(6), 3329-3341; https://doi.org/10.3390/curroncol31060253 (registering DOI) - 13 Jun 2024
Abstract
Early integrated palliative care (EIPC) for patients with advanced cancers requires the involvement of family doctors (FDs) and oncologists. We compared attitudes between patients and their providers regarding the delivery of EIPC. Patients with newly diagnosed incurable gastrointestinal (GI) cancer at a tertiary [...] Read more.
Early integrated palliative care (EIPC) for patients with advanced cancers requires the involvement of family doctors (FDs) and oncologists. We compared attitudes between patients and their providers regarding the delivery of EIPC. Patients with newly diagnosed incurable gastrointestinal (GI) cancer at a tertiary cancer centre in Ontario, Canada, were surveyed using a study-specific instrument regarding the importance of and preferences for accessing support across eight domains of palliative care. Physicians within the circle of care completed a parallel survey for each patient. The concordance between patient and physician responses was analyzed. A total of 66 patients were surveyed (median age 69, 35% female). All had an oncologist, 12% had a specialist palliative care provider (SPC), and 97% had an FD, but only 41% listed the FD as part of the care team. In total, 95 providers responded (oncologist = 68, FD = 21, SPC = 6; response rate 92%; 1–3 physician responses per patient). Disease management and physical concerns were most important to patients. Patients preferred to access care in these domains from oncologists or SPCs. For all other domains, most patients attributed primary responsibility to self or family rather than any healthcare provider. Thus, concordance was poor between patient and physician responses. Across most domains of palliative care, we found low agreement between cancer patients and their physicians regarding responsibilities for care, with FDs appearing to have limited involvement at this stage. Full article
(This article belongs to the Special Issue Palliative Care and Supportive Medicine in Cancer)
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13 pages, 618 KiB  
Article
Evaluation of Aerobic Propagation of Yeasts as Additional Step in Production Process of Corn Ethanol
by Matheus Ribeiro Barbosa Oliveira, Rafael Soares Douradinho, Pietro Sica, Layna Amorim Mota, Alana Uchôa Pinto, Tamires Marques Faria and Antonio Sampaio Baptista
Stresses 2024, 4(2), 380-392; https://doi.org/10.3390/stresses4020025 (registering DOI) - 13 Jun 2024
Abstract
Yeast is one of the co-products of ethanol plants, which can be used as a nutritional supplement in animal feed due to its high protein content. Given the importance of yeast contribution to the nutritional properties of DDG (dried distillers’ grains), the aim [...] Read more.
Yeast is one of the co-products of ethanol plants, which can be used as a nutritional supplement in animal feed due to its high protein content. Given the importance of yeast contribution to the nutritional properties of DDG (dried distillers’ grains), the aim of this study was to assess how different levels of aeration affect the biomass production and the quality of yeast providing new insights into yeast production, offering an alternative source of income for the corn ethanol industry. For this purpose, yeasts were grown in a fed-batch process, and different concentrations of aeration in the medium were tested, namely 0.5, 1.0, and 1.5 volume of air per volume of wort per minute (v v−1 min−1). At the end of the cellular biomass production process, yeasts grown with 0.5 (v v−1 min−1) aeration in the reactor showed higher biomass formation (19.86 g L−1), cellular yield (g g−1), and a lower formation of succinic acid (0.70 g L−1) and acetic acid (0.11 g L−1). Aeration influenced an increase of 1.0% in the protein content in yeast. In conclusion, lower levels of aeration in the yeast production process enables more efficient sugar utilization for biomass formation and is a potential strategy to increase the protein content and the commercial value of DDG. Full article
(This article belongs to the Collection Feature Papers in Plant and Photoautotrophic Stresses)
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13 pages, 5390 KiB  
Article
Fixed-Seat Rowing versus Sliding-Seat Rowing: Effects on Physical Fitness in Breast Cancer Survivors
by Juan Gavala-González, Mateo Real-Pérez, Laura Benítez-García and José C. Fernández-García
Cancers 2024, 16(12), 2207; https://doi.org/10.3390/cancers16122207 (registering DOI) - 13 Jun 2024
Abstract
This study aimed to analyze the effects of a team rowing-based training program on physical fitness and anthropometric parameters in female breast cancer survivors (n = 40; 56.78 ± 6.38 years). The participants were divided into two groups: one rowed in fixed-seat rowing [...] Read more.
This study aimed to analyze the effects of a team rowing-based training program on physical fitness and anthropometric parameters in female breast cancer survivors (n = 40; 56.78 ± 6.38 years). The participants were divided into two groups: one rowed in fixed-seat rowing (FSR) boats (n = 20; 56.35 ± 4.89 years), and the other rowed in sliding-seat rowing (SSR) boats (n = 20; 57.20 ± 7.7 years). Both groups engaged in two 75 min sessions per week for 24 weeks. Significant improvements were observed in both groups in terms of weight (FSR: −1.93 kg, SSR: −1.75 kg), body mass index (FSR: −0.73 kg/m2, SSR: −0.67 kg/m2), waist circumference (FSR: −2.83 cm, SSR: −3.66 cm), and hip circumference (FSR: −2.02 cm, SSR: −2.88 cm). Muscle strength improved in the lower extremities (jump test: FSR: 2.99 cm, SSR: 3.11 cm) and upper extremities (dominant: FSR: 4.13 kgf, SSR: 4.34 kgf; non-dominant: FSR: 3.67 kgf, SSR: 3.32 kgf). Aerobic capacity also improved, with the SSR group showing a greater increase (FSR: 63.05 m, SSR: 93.65 m). Flexibility tests revealed better results in the SSR group for both dominant (SSR: 1.75 cm vs. FSR: −5.55 cm) and non-dominant limbs (SSR: 1.72 cm vs. FSR: −3.81 cm). These findings suggest that the type of rowing modality can influence physical fitness outcomes, with the SSR group showing superior improvements compared to the FSR group. Full article
(This article belongs to the Special Issue Implementation of Physical Activity Promotion in Cancer Care)
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7 pages, 760 KiB  
Case Report
The Association of a Single Nucleotide Variant in COL5A1 to Early Onset Keratoconus and Pectus Excavatum—Convergence of Extracellular Matrix Pathologies
by Griffin Bryant, Peyton Moore and Mohanakrishnan Sathyamoorthy
Medicina 2024, 60(6), 974; https://doi.org/10.3390/medicina60060974 (registering DOI) - 13 Jun 2024
Abstract
Keratoconus is a bilateral ocular condition characterized by irregularities and the thinning of the cornea. Decreased central corneal thickness is a hallmark of the condition, and numerous genes have played a role in altering corneal thickness and the subsequent development of keratoconus. Variants [...] Read more.
Keratoconus is a bilateral ocular condition characterized by irregularities and the thinning of the cornea. Decreased central corneal thickness is a hallmark of the condition, and numerous genes have played a role in altering corneal thickness and the subsequent development of keratoconus. Variants in the structural and regulatory genes of the extracellular matrix have been highly associated with keratoconus, as well as with pectus excavatum, a chest wall deformity commonly seen in connective tissue disorders. This report describes a patient with a c.1720-11T>A intronic variant in the collagen-encoding gene, COL5A1, who was diagnosed with early-onset keratoconus and demonstrated a significant pectus excavatum. This report associates a COL5A1 variant with these seemingly unrelated phenotypic associations, further advancing the literature on the topic. Full article
(This article belongs to the Section Ophthalmology)
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11 pages, 341 KiB  
Article
Relationship between Thought Style, Emotional Response, Post-Traumatic Growth (PTG), and Biomarkers in Cancer Patients
by Mariana Sierra-Murguía, Martha L. Guevara-Sanginés, Gabriela Navarro-Contreras, Guillermo Peralta-Castillo, Amalia Padilla-Rico, Lucía González-Alcocer and Ferrán Padrós-Blázquez
Int. J. Environ. Res. Public Health 2024, 21(6), 763; https://doi.org/10.3390/ijerph21060763 (registering DOI) - 13 Jun 2024
Abstract
(1) Introduction: Cancer diagnosis has been related to depression, anxiety, and distress, as well as to post-traumatic growth (PTG). One of the mediating variables for emotional response is thought style (rumination, cognitive avoidance, and cognitive engagement). (2) Aim: To identify the relationship between [...] Read more.
(1) Introduction: Cancer diagnosis has been related to depression, anxiety, and distress, as well as to post-traumatic growth (PTG). One of the mediating variables for emotional response is thought style (rumination, cognitive avoidance, and cognitive engagement). (2) Aim: To identify the relationship between thought style and emotional responses to cancer. A secondary aim was to identify the relationship between emotional responses and inflammatory immunological biomarkers. (3) Method: A total of 115 patients with cancer were included in the study. Before initiating cancer treatment, patients were assessed using the Hospital Anxiety and Depression Scale (HADS), distress thermometer, and Post-Traumatic Growth Inventory (PTGI). Patients provided their most recent blood biometry. (4) Results: Rumination correlated with anxiety, depression, and distress. Cognitive avoidance correlated with PTG (−0.240) and distress (−0.209). Cognitive engagement correlated with PTG (0.393). Regarding thought style and biomarkers, a negative correlation was observed for absolute neutrophils with cognitive avoidance (−0.271) and rumination (0.305). Regarding biomarkers and emotional responses, there was a negative correlation between PTG and absolute lymphocytes (−0.291). There was also a correlation between PTG and neutrophils (0.357) and neutrophil-to-lymphocyte ratio (NLR) (0.295). (5) Conclusions: Thought style is related to the emotional response to a cancer diagnosis; rumination is related to depression, distress, and anxiety; and cognitive engagement is related to PTG. PTG is related to inflammation and immunological biomarkers. Full article
(This article belongs to the Special Issue Cancer Causes and Control)
18 pages, 628 KiB  
Systematic Review
ANCA-Positive Small-Vessel Vasculitis Following SARS-CoV-2 Vaccination—A Systematic Review
by Kinga Łysak, Agata Walulik, Michał Błaszkiewicz and Krzysztof Gomułka
Vaccines 2024, 12(6), 656; https://doi.org/10.3390/vaccines12060656 (registering DOI) - 13 Jun 2024
Abstract
As vaccinations against the SARS-CoV-2 virus have become a crucial tool in controlling the spread of the disease, reports of rare health complications have emerged, including new-onset antineutrophil cytoplasmic autoantibodies (ANCA)-associated vasculitis (AAV). We systematically reviewed new-onset AAV following COVID-19 vaccination case reports [...] Read more.
As vaccinations against the SARS-CoV-2 virus have become a crucial tool in controlling the spread of the disease, reports of rare health complications have emerged, including new-onset antineutrophil cytoplasmic autoantibodies (ANCA)-associated vasculitis (AAV). We systematically reviewed new-onset AAV following COVID-19 vaccination case reports and case series published in three databases before January 2024 following PRISMA guidelines to understand the characteristics of possible causal relationships or coincidences. In total, 404 articles were screened respectively by title, abstracts, and full-texts. Thirty-four papers fulfilled the inclusion criteria and have been analyzed, covering 44 patients with new-onset AAV after COVID-19 vaccination with no prior history of COVID-19 infection. Data regarding patients’ metrics, comorbidities, vaccination characteristics, symptoms, diagnostics, treatment, and outcomes were investigated and summarized. The cohort consisted predominantly of females. AAV diagnosis was confirmed via biopsy, with renal dysfunction as a prevailing manifestation. In most cases, the first symptoms of AAV developed after the second dose; moreover, Pfizer-BioNTech was the most frequently administered vaccine among the analyzed cohort. Primary treatment involved glucocorticoid therapy, with a mostly favourable response. This systematic review aims to raise awareness among clinicians in the field regarding this rare but possible complication, to promote the prompt recognition and diagnosis of de novo ANCA-positive small-vessel vasculitis in timely association with SARS-CoV-2 vaccination. Full article
(This article belongs to the Special Issue COVID-19 Vaccine-Associated Autoimmune Diseases and Disorders)
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