ALBERT

Note: Contents Part I Catastrophic Landslides with Different Triggers Rock Avalanches: Basic Characteristics and Classification Criteria / Alexander Strom Study on the Phenomena of Liquefaction Induced Massive Landslides in 28 September 2018 Palu-Donggala Earthquake / Paulus P. Rahardjo The Krasnogorsk Landslide (Northern Caucasus): Its Evolution and Modern Activity / Igor K. Fomenko, Oleg V. Zerkal, Alexander Strom, Daria Shubina, and Ludmila Musaeva Earthquake-Triggered Landslides and Slope-Seismic Waves Interaction Inferring Induced Displacements / Salvatore Martino, Celine Bourdeau, Josè Delgado, and Luca Lenti Slope Deformation caused Jure Landslide 2014 Along Sun Koshi in Lesser Nepal Himalaya and Effect of Gorkha Earthquake 2015 / H. Yagi, G. Sato, H. P. Sato, D. Higaki, V. Dangol, and S. C. Amatya Inventory of Landslides Triggered by the Hejing Ms6.6 Earthquake, China, on 30 June 2012 / Chong Xu and Kai Li Pressure Head Dynamics on a Natural Slope in Eastern Iburi Struck by the 2018 Hokkaido Earthquake / Toshiya Aoki, Shin’ya Katsura, Takahiko Yoshino, Takashi Koi, Yasutaka Tanaka, and Takashi Yamada Investigation of 20 August 2019 Catastrophic Debris Flows Triggered by Extreme Rainstorms Near Epicentre of Wenchuan Earthquake / Dalei Peng, Limin Zhang, Hofai Wong, Ruilin Fan, and Shuai Zhang Spatial Distribution of Lakes in the Central Andes (31°–36°), Argentina: Implications for Outburst Flood Hazard / Mariana Correas-Gonzalez, Stella Maris Moreiras, and Jan Klimeš Rockfall/Rockslide Hazard, Lake Expansion and Dead-Ice Melting Assessment: Lake Imja, Nepal / Tomas Kroczek and Vit Vilimek Formation of the 2018 Bureya Landslide, Far East of Russia / Oleg V. Zerkal, Aleksey N. Makhinov, Alexander Strom, Vladimir I. Kim, Michael E. Kharitonov, and Igor K. Fomenko Landslide Dam Hazards: Assessing Their Formation, Failure Modes, Longevity and Downstream Impacts / Regine Morgenstern, Chris Massey, Brenda Rosser, and Garth Archibald The Sedimentology and Internal Structure of Landslide Dams—Implications for Internal Erosion and Piping Failure: A Review / Chukwueloka A. U. Okeke An Interdisciplinary Assessment of a Coal-Mining-Induced Catastrophic Landslide (Czech Republic) / Jan Burda and Vít Vilímek Could Glacial Retreat-Related Landslides Trigger Volcanic Eruptions? Insights from Mount Meager, British Columbia / Gioachino Roberti, Brent Ward, Benjamin van Wyk de Vries, Nicolas Le Corvec, Swetha Venugopal, Glyn Williams-Jones, John J. Clague, Pierre Friele, Giacomo Falorni, Geidy Baldeon, Luigi Perotti, Marco Giardino, and Brian Menounos Rock Avalanches in the Upper Reaches of the Mzymta River, Russia / Andrey A. Ponomarev, Kai Kang, and Oleg V. Zerkal Structural and Dynamic Numerical Models of Rockslides in the Carpathians and the Alps / Emilie Lemaire, Anne-Sophie Mreyen, and Hans-Balder Havenith Quantitative Investigation of a Mass Rock Creep Deforming Slope Through A-Din SAR and Geomorphometry / Michele Delchiaro, Emanuele Mele, Marta Della Seta, Salvatore Martino, Paolo Mazzanti, and Carlo Esposito Deformational Features of Deep-Seated Gravitational Slope Deformation of Slate Slopes in the Central Range, Taiwan / Ching-Ying Tsou, Masahiro Chigira, Yu-Chung Hsieh, Mien-Ming Chen, and Tai-Chieh He Bathymetric Analyses of Submarine Landslides on the Jan Mayen Ridge, Norwegian–Greenland Sea / Kiichiro Kawamura and Jan Sverre Laberg Forkastningsfjellet Rock Slide, Spitsbergen: State of Activity in a Changing Climate / Dirk Kuhn, Reginald L. Hermanns, Jewgenij Torizin, Michael Fuchs, Tim Redfield, Raymond Eilertsen, and Dirk Balzer Catastrophic Landslides in Indian Sector of Himalaya / Vinod K. Sharma Part II Frontiers of Landslide Science Enhancing Preparedness Against Impact of Climate Change on Slope Safety in Hong Kong / K. K. S. Ho, H. W. Sun, E. J. Lam, and F. L. C. Lo Climate Change and Surface Deformation Characteristics in Degradation Area of Permafrost in Lesser Khingan Mountain, China / Wei Shan, Chengcheng Zhang, Ying Guo, Monan Shan, Xujing Zeng, and Chunjiao Wang Climate Change Impact Evaluation on the Water Balance of the Koroška Bela Area, NW Slovenia / Nejc Bezak, Tina Peternel, Anže Medved, and Matjaž Mikoš Global Warming as a Predisposing Factor for Landslides in Glacial and Periglacial Areas: An Example from Western Alps (Aosta Valley, Italy) / Jessica Maria Chicco, Marco Frasca, Giuseppe Mandrone, Damiano Vacha, and Laurie Jayne Kurilla Characteristics and Causes of the Debris Flow in Shelong Gully, China / Qiang Zou, Peng Cui, Hu Jiang, Yanguo Liu, Cong Li, Sheng Hu, and Bin Zhou MPM Modelling of Buildings Impacted by Landslides / Sabatino Cuomo, Angela Di Perna, and Mario Martinelli Accelerating Landslide Hazard at Kandersteg, Swiss Alps; Combining 28 Years of Satellite InSAR and Single Campaign Terrestrial Radar Data / Rafael Caduff, Tazio Strozzi, Nils Hählen, and Jörg Häberle Identification Old Landslides in Permafrost Degradation Area in Northeast China by Difference Distribution of Surface Trees / Ying Guo, Wei Shan, Zhichao Xu, Chunjiao Wang, and Shuanglin Wang Forensic Geotechnical Investigation of the Skjeggestad Quick Clay Landslide, Norway / Thi Minh Hue Le, Vidar Gjelsvik, Suzanne Lacasse, Stein-Are Strand, Eirik Traae, and Vikas Thakur Accuracy Assessment of Unmanned Aerial Vehicle (UAV) Structure from Motion Photogrammetry Compared with Total Station for a Deformed Slope / Vera Hui Loo and Chou Khong Wong ARAS: A Web-Based Landslide Susceptibility and Hazard Mapping System / Murat Ercanoglu, Mehmet Balcılar, Fatih Aydın, Sedat Aydemir, Güler Deveci, and Bilgekağan Çintimur A Landform Evolution Model for the Mannen Area in Romsdal Valley, Norway / Paula Hilger, Reginald L. Hermanns, and Bernd Etzelmüller Multimethodological Study of Non-linear Strain Effects Induced by Thermal Stresses on Jointed Rock Masses / Guglielmo Grechi and Salvatore Martino Extreme Rainfall Induced Landslide Susceptibility Assessment Using Autoencoder Combined with Random Forest / Kounghoon Nam and Fawu Wang Economizing Soil Nailing Design by Drainage Improvement—Case History at Ginigathhena / S. O. A. D. Mihira Lakruwan and S. A. S. Kulathilaka Performances of Geosynthetics-Reinforced Barriers for Protection Against Debris Avalanches / Sabatino Cuomo, Sabrina Moretti, Lorenzo Frigo, and Stefano Aversa Large and Small Scale Multi-Sensors Remote Sensing for Landslide Characterisation and Monitoring / Carlo Tacconi Stefanelli, Teresa Gracchi, Guglielmo Rossi, and Sandro Moretti Novel Cosmogenic Datings in Landslide Deposits, San Juan, Argentina / Pilar Jeanneret, Stella Maris Moreiras, Silke Merchel, Andreas Gärtner, Steven Binnie, Maria Julia Orgeira, G. Aumaître, D. Bourlès, and K. Keddadouche Modeling Landslide Volumes: A Case Study in Whatcom County, Washington, USA / Gabriel Legorreta Paulin, Trevor A. Contreras, Katherine A. Mickelson, Kara E. Jacobacci, and William Gallin CRE Dating of Torrential Alluvial Deposits as an Approximation to Holocene Climate-Change Signatures in the Northwestern Andes of Colombia / Santiago Noriega-Londoño, Maria Isabel Marín-Cerón, Julien Carcaillet, Matthias Bernet, and Isandra Angel Features of Construction in Areas with Deep Block-Type Landslides / Andrey Kazeev and German Postoev Rock Glaciers and Landslides in the Waste Dump of High-Altitude Kumtor Goldmine (Kyrgyzstan) / Isakbek Torgoev and Salamat Toguzbaev Geosynthetic Reinforced Soil Structures for Slope Stabilization and Landslide Rehabilitation in Asia / Pietro Rimoldi, Matteo Lelli, Pietro Pezzano, and Fabrizia Trovato Cutting-Edge Technologies Aiming for Better Outcomes of Landslide Disaster Mitigation / Kazuo Konagai International Consortium on Landslides

Note: Contents Automated Blood Cultures / Xiang Y. Han Laboratory Automation in Clinical Bacteriology / Antony Croxatto Biochemical Profile-Based Microbial Identification Systems / Safina Hafeez and Jaber Aslanzadeh Advanced Phenotypic Antimicrobial Susceptibility Testing Methods / Charles W. Stratton Rapid Microbial Antigen Tests / Sheldon Campbell and Marie L. Landry Antibody Detection: Principles and Applications / Yun F. (Wayne) Wang Procalcitonin and Other Host-Response-Based Biomarkers for Evaluation of Infection and Guidance of Antimicrobial Treatment / Philipp Schuetz, Ramon Sager, Yannick Wirz, and Beat Mueller Functional Assessment of Microbial, Viral, and Parasitic Infections Using Real-Time Cellular Analysis / Dazhi Jin, Xiao Xu, Min Zheng, Alex Mira, Brandon J. Lamarche, and Alex B. Ryder Cellular Fatty Acid-Based Microbial Identification and Antimicrobial Susceptibility Testing / Nicole Parrish and Stefan Riedel MALDI-TOF Mass Spectrometry-Based Microbial Identification and Beyond / Alexander Mellmann and Johannes Müthing Transcriptomic Techniques in Diagnostic Microbiology / Zachary E. Holcomb and Ephraim L. Tsalik The Use of Microbial Metabolites for the Diagnosis of Infectious Diseases / Mahesh J. Thalavitiya Acharige, Seena S. Koshy, and Sophia Koo Nucleic Acid Extraction and Enrichment / Jeong Hwan Shin Nonamplified Probe-Based Microbial Detection and Identification / Fann Wu, Tao Hong, and Phyllis Della-Latta Molecular Typing Techniques: State of the Art / Richard V. Goering PCR and Its Variations / Eleanor A. Powell and Michael Loeffelholz Non-PCR Amplification Techniques / Rosemary C. She, Ted E. Schutzbank, and Elizabeth M. Marlowe Real-Time and Digital PCR for Nucleic Acid Quantification / Alexander J. McAdam Direct Nucleotide Sequencing for Amplification Product Identification / Tao Hong Solid and Suspension Microarrays for Detection and Identification of Infectious Diseases / Sherry Dunbar, Janet Farhang, Shubhagata Das, Sabrina Ali, and Heng Qian Real-Time Detection of Amplification Products Through Fluorescence Quenching or Energy Transfer / Caitlin Otto and Shihai Huang PCR/Electrospray Ionization-Mass Spectrometry as an Infectious Disease Diagnostic Tool / Volkan Özenci and Kristoffer Strålin Nucleic Acid Amplicons Detected and Identified by T2 Magnetic Resonance / Jessica L. Snyder, Heather S. Lapp, Zhi-Xiang Luo, Brendan Manning, and Thomas J. Lowery Molecular Contamination and Amplification Product Inactivation / Susan Sefers and Jonathan E. Schmitz Index

Note: Contents 1 Introduction 2 Time and Geological Periods 3 Rocks and the Geological Record 4 The Age of the Rocks 5 Plate Tectonics, the Unifying Theory 6 Tectonics Units of Europe 6.1 Ancestral Europe 6.2 Paleo-Europe 6.3 Meso-Europe 6.4 Neo-Europe 7 Overview of the Plate Tectonic History of Europe 8 The Dynamic Earth, Earthquakes in Germany 9 Early Geological Evolution of Germany 9.1 The Pre-variscan Basement 9.2 Occurrences of Proterozoic and Early Paleozoic Units 9.2.1 Harz Mountains 9.2.2 Rheinisches Schiefergebirge 9.2.3 Lusatia 9.2.4 Elbe Zone 9.2.5 Erzgebirge 9.2.6 Schwarzburg Anticlinorium, Vesser Zone 9.2.7 Bohemian Massif 9.2.8 Black Forest 10 Late Paleozoic of Germany 10.1 The Variscan Orogeny 10.1.1 Rhenohercynian Zone 10.1.2 Saxothuringian Zone 10.1.3 Moldanubian Zone 10.2 Development of the Variscan Orogeny Through Time 10.2.1 Devonian 10.2.2 Carboniferous 10.3 The Variscides in Germany 10.3.1 Regional Geology of the Rhenohercynian 10.3.2 Northern Phyllite Zone 10.3.3 Regional Geology of the Saxothuringian 10.3.4 Saxothuringian (excluding the Mid-German Crystalline Zone) 10.3.5 Regional Geology of the Moldanubian 11 Permian and Mesozoic Geology of Germany 11.1 Post-Variscan History 11.2 Permian 11.2.1 Rotliegend 11.2.2 Zechstein 11.3 Permian/Triassic Boundary 11.4 Triassic 11.4.1 Buntsandstein (Bunter Sandstone) 11.4.2 Muschelkalk 11.4.3 Keuper 11.5 Triassic/Jurassic Boundary 11.6 Jurassic 11.6.1 Early Jurassic 11.6.2 Middle Jurassic 11.6.3 Late Jurassic 11.7 Cretaceous 11.7.1 Early Cretaceous 11.7.2 Late Cretaceous 11.8 Cretaceous/Tertiary Boundary 12 The Evolution of the Alps 12.1 Overview of the Tectonic Structure of the Alps 12.1.1 Helvetic 12.1.2 Penninic 12.1.3 Austroalpine and Southern Alpine Units 12.2 Development of the Alpine Region During the Permian 12.3 The Alpine Triassic 12.4 The Alpine Jurassic 12.5 The Alpine Region in the Cretaceous and Early Tertiary 12.6 The Tectonic Evolution of the Alps 13 Tertiary Basins 13.1 Tertiary Brown Coal Deposits 13.2 The Upper Rhine Graben 13.3 The Northern Alpine Foreland Basin—The Molasse 14 Tertiary and Quaternary Volcanism 14.1 Volcanism in the Eifel 14.2 Westerwald, Siebengebirge, Vogelsberg, Rhön, and Heldburger Gangschar 14.3 Small Chimneys in the Odenwald and the Messel Pit 14.4 Kaiserstuhl 14.5 Tuff Chimneys of Bad Urach, Hegau 14.6 Eger Graben Area, Fichtel Mountains, Vogtland, and Lusatia 15 Asteroid Craters 16 Germany During the Glacial Periods 16.1 Glacial and Interglacial Periods 16.2 Deposits and Erosion Forms of the Glacial Periods 16.3 The Baltic Sea—A Relic from the Last Glaciation Period Appendix References Index

Note: Contents Part I Introduction 1 Antarctic Seaweeds: Biogeography, Adaptation, and Ecosystem Services / Iván Gómez and Pirjo Huovinen 1.1 Introduction: The Historical Context 1.2 Antarctic Seaweeds in the Wake of Climate Change 1.3 The Book 1.4 Gaps, Emerging Challenges, and Future Directions References Part II Diversity and Biogeography 2 Diversity of Antarctic Seaweeds / Mariana C. Oliveira, Franciane Pellizzari, Amanda S. Medeiros, and Nair S. Yokoya 2.1 The Antarctic Environment 2.2 Seaweeds in Antarctica: Definition and Importance 2.3 Seaweed Taxonomic Studies in Antarctica: Toward a New Species Compilation 2.4 Molecular Taxonomy for the Study of Antarctic Seaweed Diversity 2.5 Seaweed Distribution in Antarctica 2.6 Concluding Remarks: Gaps and Prospects for the Future References 3 Biogeographic Processes Influencing Antarctic and sub-Antarctic Seaweeds / Ceridwen I. Fraser, Adele Morrison, and Pamela Olmedo Rojas 3.1 Antarctica’s Place in the World: An Isolated Continent? 3.2 Physical Oceanographic Processes Influencing Movement of Seaweeds into or out of the Antarctic 3.3 Hitch-Hiking to the Antarctic: Passengers on Seaweed Rafts 3.4 Concluding Remarks References 4 Detached Seaweeds as Important Dispersal Agents Across the Southern Ocean / Erasmo C. Macaya, Fadia Tala, Iván A. Hinojosa, and Eva Rothäusler 4.1 Introduction 4.2 Detached Seaweeds in Antarctica 4.3 Abiotic Factors Influencing Floating Seaweeds 4.4 Biotic Factors Affecting Floating Seaweeds 4.5 Physiology of Floating and Drifting Seaweeds: Traspassing Thermal Barriers References 5 Biogeography of Antarctic Seaweeds Facing Climate Changes / Franciane Pellizzari, Luiz Henrique Rosa, and Nair S. Yokoya 5.1 The Abiotic Setting of the Southern Ocean 5.2 Biogeographic Patterns 5.3 Seaweed Assemblages: Are Antarctic Seaweed Diversity and Richness Changing? 5.4 The Physiological Bases of Macroalgal Shifts 5.5 Deception Island: A Case Study of Opportunistic, Alien, Cryptic and Cryptogenic Species 5.6 Reevaluating Eco-Regions, Isolation, and Endemism in the Southern Ocean 5.7 Concluding Remarks: Prospects for the Future Marine Flora of the Southern Ocean References 6 Comparative Phylogeography of Antarctic Seaweeds: Genetic Consequences of Historical Climatic Variations / Marie-Laure Guillemin, Claudio González-Wevar, Leyla Cárdenas, Hélène Dubrasquet, Ignacio Garrido, Alejandro Montecinos, Paula Ocaranza-Barrera, and Kamilla Flores Robles 6.1 Historical Isolation of Antarctic Marine Macroalgae 6.2 Antarctic Marine Macroalgae: Surviving Quaternary Glacial Cycles in Situ 6.3 Persistence in Multiple Isolated Glacial Refugia Versus a Single Antarctic Refugium 6.4 Antarctic Macroalgae Genetic Diversity: COI and TufA Sequences Data Sets 6.5 Brown, Red and Green Macroalgae: Sharing a Common Pattern of Glacial Impact and Postglacial Populations Recovery? 6.6 Concluding Remarks References Part III Physiology, Productivity and Environmental Reponses 7 Underwater Light Environment of Antarctic Seaweeds / Pirjo Huovinen and Iván Gómez 7.1 Introduction 7.2 Optics of Antarctic Coastal Waters 7.3 Adaptations of Antarctic Seaweeds to Extreme Light Conditions 7.4 Consequences for Light Field Under Current and Future Threats 7.5 Concluding Remarks References 8 Production and Biomass of Seaweeds in Newly Ice-Free Areas: Implications for Coastal Processes in a Changing Antarctic Environment / María L. Quartino, Leonardo A. Saravia, Gabriela L. Campana, Dolores Deregibus, Carolina V. Matula, Alicia L. Boraso, and Fernando R. Momo 8.1 Introduction: Seaweeds in Coastal Marine Ecosystems 8.2 Macroalgae and Carbon Fluxes in Antarctic Coastal Areas 8.3 Macroalgal Biomass Studies in Antarctica 8.4 The Ecosystem of Potter Cove: An Outstanding Case Study 8.5 A Dynamic Growth Model for Antarctic Macroalgae Under a Fast-Changing Environment 8.6 Seaweed Production in Present and Future Warming Scenarios 8.7 Future Prospects References 9 Carbon Balance Under a Changing Light Environment / Dolores Deregibus, Katharina Zacher, Inka Bartsch, Gabriela L. Campana, Fernando R. Momo, Christian Wiencke, Iván Gómez, and María L. Quartino 9.1 Introduction 9.2 Carbon Balance: A Case Study in Potter Cove 9.3 New Scenarios and Their Implications for Algal Photosynthesis 9.4 Concluding Remarks and Future Prospects References 10 Life History Strategies, Photosynthesis, and Stress Tolerance in Propagules of Antarctic Seaweeds / Nelso Navarro, Pirjo Huovinen, and Iván Gómez 10.1 Seasonal Strategies and Life History Cycles 10.2 Photosynthetic Light Requirements of Early Stages 10.3 Effects of Environmental Factors on the Biology of Propagules 10.4 Concluding Remarks: Biology of Propagules under Climate Change References 11 Form and Function in Antarctic Seaweeds: Photobiological Adaptations, Zonation Patterns, and Ecosystem Feedbacks / Iván Gómez and Pirjo Huovinen 11.1 Brief Overview of Form and Function in Seaweeds 11.2 Functional Groups of Seaweeds in the Antarctic 11.3 The Vertical Zonation of Antarctic Seaweeds: A Paradigm of Spatial Distribution of Different Morpho-functional Traits 11.4 Light Use Characteristics as a Major Factor Delineating Physiological Thallus Anatomy of Seaweeds 11.5 Form and Function in the Context of Life Strategies and Stress Tolerance 11.6 Functional Traits of Seaweeds and Properties of Benthic Communitie 11.7 Concluding Remarks References Part IV Biological Interactions and Ecosystem Processes 12 Successional Processes in Antarctic Benthic Algae / Gabriela L. Campana, Katharina Zacher, Fernando R. Momo, Dolores Deregibus, Juan Ignacio Debandi, Gustavo A. Ferreyra, Martha E. Ferrario, Christian Wiencke, and María L. Quartino 12.1 Introduction 12.2 Structural Patterns and Changes in Algal Community Composition during Succession 12.3 Ecological Factors Influencing Antarctic Algal Succession 12.4 Experimental Approaches to Study In Situ Succession of Antarctic Benthic Algae 12.5 Concluding Remarks and Perspectives References 13 Seaweed-Herbivore Interactions: Grazing as Biotic Filtering in Intertidal Antarctic Ecosystems / Nelson Valdivia 13.1 Biological Invasions and Their Impact on the Ecology of Antarctic Coastal Systems 13.2 Recent Introductions of Exotic Macroalgae in Antarctica 13.3 Can Grazers Control Alien Macroalgae in Antarctica? 13.4 Ulva intestinalis as a Case Study in a Simple, Two- Species Assembly Model 13.5 Concluding Remarks References 14 Diversity and Functioning of Antarctic Seaweed Microbiomes / Juan Diego Gaitan-Espitia and Matthias Schmid 14.1 Introduction: Environment and Antarctic Seaweed Host-Microbiome 14.2 Functional Interactions of Antarctic Seaweeds and Their Associated Microbiota 14.3 Deciphering the Structure and Diversity of Seaweed Microbiomes 14.4 Variation of Bacterial Community Diversity in Antarctic Seaweeds 14.5 Conclusions and Future Perspectives References 15 Seaweeds in the Antarctic Marine Coastal Food Web / Fernando R. Momo, Georgina Cordone, Tomás I. Marina, Vanesa Salinas, Gabriela L. Campana, Mariano A. Valli, Santiago R. Doyle, and Leonardo A. Saravia 15.1 Introduction 15.2 Food Webs and Seaweeds 15.3 Network Dynamics and Robustness 15.4 Non-Trophic Interactions 15.5 Final Remarks References 16 Trophic Networks and Ecosystem Functioning / Marco Ortiz, Brenda B. Hermosillo-Núñez, and Ferenc Jordán 16.1 Introduction 16.2 Macroscopic Ecosystem-Network Properties 16.3 Keystone Species Complex (KSC) 16.4 Contribution of Keystone Species Complex to Macroscopic Network Properties 16.5 Constrains and Perspectives Appendix 16.A References Part V Chemical Ecology 17 Chemical Mediation of Antarctic Macroalga-Grazer Interactions / Charles D. Amsler, James B. McClintock, and Bill J. Baker 17.1 Introduction 17.2 Feeding Bioassay Methodology 17.3 Antarctic Macroalgal Resistance to Herbivory 17.4 Macroalga-Invertebrate Interactions on the Western Antarctic Peninsula 17.5 Overview References 18 Brown Algal Phlorotannins: An Overview of Their Functional Roles / Iván Gómez and Pirjo

Note: Contents 1 Data Acquisition in Earth Sciences 1.1 Introduction 1.2 Methods of Data Acquisition 1.3 Classroom-Sized Earth Science Experiments Recommended Reading 2 Introduction to MATLAB 2.1 MATLAB in Earth Sciences 2.2 Getting Started 2.3 The Syntax 2.4 Array Manipulation 2.5 Basic Visualization Tools 2.6 Generating Code to Recreate Graphics 2.7 Publishing and Sharing MATLAB Code 2.8 Exercises 2.8.1 Getting Started with MATLAB 2.8.2 Using MATLAB Help and Docs 2.8.3 Creating a Simple MATLAB Script 2.8.4 Creating Graphics with MATLAB 2.8.5 Collaborative Coding with MATLAB Recommended Reading 3 MATLAB Programming 3.1 Introduction to Programming 3.2 Data Types in MATLAB 3.3 Data Storage and Handling 3.4 Control Flow 3.5 Scripts and Functions 3.6 Creating Graphical User Interfaces 3.7 Exercises . 3.7.1 Communicating with the LEGO MINDSTORMS EV3 Brick 3.7.2 Controlling EV3 Motors Using an Ultrasonic Sensor 3.7.3 Reading Complex Text Files with MATLAB 3.7.4 Smartphone Sensors with MATLAB Mobile 3.7.5 Smartphone GPS Tracking with MATLAB Mobile Recommended Reading 4 Geometric Properties 4.1 Introduction 4.2 Position on the Earth’s Surface 4.3 Digital Elevation Models of the Earth’s Surface 4.4 Gridding and Contouring 4.5 Exercises 4.5.1 Dip and Dip Direction of Planar Features Using Smartphone Sensors 4.5.2 Precision and Accuracy of Ultrasonic Distance Measurements 4.5.3 Spatial Resolution of the LEGO EV3 Ultrasonic Sensor 4.5.4 Object Scanning with the LEGO EV3 Ultrasonic Sensor 4.5.5 Point Clouds from Multiple Smartphone Images Recommended Reading 5 Visible Light Images 5.1 Introduction 5.2 Visible Electromagnetic Waves 5.3 Acquiring Visible Digital Images 5.4 Storing Images on a Computer 5.5 Processing Images on a Computer 5.6 Image Enhancement, Correction and Rectification 5.7 Exercises 5.7.1 Smartphone Camera/Webcam Images with MATLAB 5.7.2 Enhancing, Rectifying and Referencing Images 5.7.3 Stitching Multiple Smartphone Images 5.7.4 Spatial Resolution of the LEGO EV3 Color Sensor 5.7.5 Scanning Images Using the LEGO EV3 Color Sensor Recommended Reading 6 Spectral Imaging 6.1 Introduction 6.2 Visible to Thermal Electromagnetic Radiation 6.3 Acquiring Spectral Images 6.4 Storing Spectral Images on a Computer 6.5 Processing Spectral Images on a Computer 6.6 Exercises 6.6.1 Infrared Spectrometry of Landscapes 6.6.2 Using Spectral Cameras in a Botanic Garden 6.6.3 Using RGB Cameras to Classify Minerals in Rocks 6.6.4 Using Spectral Cameras to Classify Minerals in Rocks 6.6.5 Thermal Imaging in a Roof Garden Recommended Reading 7 Acquisition of Elastic Signals 7.1 Introduction 7.2 Earth’s Elastic Properties 7.3 Acquiring Elastic Signals 7.4 Storing and Processing Elastic Signals 7.5 Exercises 7.5.1 Smartphone Seismometer 7.5.2 Smartphone Sonar for Distance Measurement 7.5.3 Use of Stereo Microphones to Locate a Sound Source 7.5.4 Sound in Time and Frequency Domains 7.5.5 Distortion of a Harmonic Signal Recommended Reading 8 Gravimetric, Magnetic and Weather Data 8.1 Introduction 8.2 Earth’s Gravity Field, Magnetic Field and Weather 8.3 Acquiring Gravimetric, Magnetic and Weather Data 8.4 Storing Gravimetric, Magnetic and Weather Data 8.5 Exercises 8.5.1 Measuring the Density of Minerals 8.5.2 Gravitational Acceleration 8.5.3 Position, Velocity and Acceleration 8.5.4 LEGO-Smartphone Magnetic Survey 8.5.5 ThingSpeak Weather Station Recommended Reading

Note: Contents Consistency and Uncertainty Analyses of Sediment Transport Monitoring in the Transboundary River: Case Study of Western Dvina (Russian Federation, Belarus and Latvia) / S. R. Chalov Global Change Impact on Ephemeral Streams Sediment Load in the Raya Graben, Northern Ethiopia / P. Billi, B. Demissie, J. Nyssen, A. Frankl, and M. Haile Longitudinal and Cross Profiles as Indicators of Morphodynamics of Small Drainage Basins (Case Study European Russia) / V. P. Bondarev Change of Erosive Activity in the Context of Change of the Climate / S. V. Budnik Numerical Modeling of Channel Deformation Taking into Account Sediment Fractions Distribution / A. I. Aleksyuk, V. V. Belikov, N. M. Borisova, and T. A. Fedorova Drivers of Sedimentary Fluxes Assessment in Alpine Catchments / V. O. Bazilova, S. R. Chalov, and A. S. Tsyplenkov Peculiarities of Ice Nucleation on Particles in Atmosphere and Soil / D. M. Frolov The Extreme Rainfall Characteristics and Terrace Greenhouse Erosion Control in Climate Change and Human Impact in Hilly and Gully Region of the Loess Plateau in China / J. E. Gao, Y. X. Zhang, X. H. Li, H. J. Li, Z. Gao, and M. J. Ji Integration of Landforms, Deposits and Paleosols Analysis for Reconstructing Holocene Debris Flow Activity in the Low Mountains of Kola Peninsula / E. V. Garankina, V. R. Belyaev, Y. R. Belyaev, A. L. Gurinov, M. M. Ivanov, N. V. Kuzmenkova, F. A. Romanenko, A. I. Rudinskaya, and E. D. Tulyakov Trees as Large-Scale Natural Phononic Crystals / Jian-Kun Huang, Yi-Fan Liu, and Ya-Guang Li Climate Change and Sediment Yield in Kamchatka, Far East of Russia / L. V. Kuksina Selenga River Runoff Projections in the XXI Century: ECOMAG-Based Simulation Results / T. D. Millionshchikova Postglacial Incision-Widening-Infill Cycles at the Borisoglebsk Upland: Correlations Between Interfluve Headwaters and Fluvial Network / Y. V. Shishkina, E. V. Garankina, V. R. Belyaev, P. V. Andreev, A. I. Bondar, V. I. Potapova, T. A. Verlova, and ILYA G. Shorkunov Geomorphometric and Geoinformation Approach to Meliorative Evaluation of the Territory / A. R. Suleymanov The Innovation Technology Based on Molecular Phylogeny of Bacillariophyceae for Water Quality Monitoring / A. E. Sverdrup and L. L. Frolova Water Balance Assessment Using Swat Model. Case Study on Russian Subcatchment of Western Dvina River / P. N. Terskii, A. A. Kuleshov, and S. R. Chalov Numerical Modeling of Channel Processes and Hydraulic Engineering Impact on the River Amur / E. Fingert, I. Krylenko, V. Belikov, P. Golovlyov, M. Samokhin, S. Borovkov, and A. Zavadskii Channel Processes Dynamics at Wet Subtropical Climate of Russian Black Sea Coast / Y. Kuznetsova, V. Golosov, and N. Ivanova Intra-storm Variability of Coefficient of Variation of Runoff and Soil Loss in Consecutive Storms at Experimental Plot Scale / M. Kiani-Harchegani, S. H. R. Sadeghi, and A. Ghahramani Study of Channel Changes in the Lena River Near Yakutsk Based on Long-Term Data, Satellite Images and Two-Dimensional Hydrodynamic Model / E. D. Kornilova, E. A. Morozova, I. N. Krylenko, E. A. Fingert, P. P. Golovlyov, A. S. Zavadsky, and V. V. Belikov A Probabilistic Approach to Interpret Long-Term Observations of Sediment Yield in Experimental Catchments in Southern Italy / P. Porto and G. Callegari Extreme Erosion Events and Climate Change / E. V. Promakhova, L. V. Kuksina, and V. N. Golosov The Emission of Carbon Dioxide from Soils Washed-Out and Buried by Accelerated Erosion in the Chernozem Belt of the European Russia / A. Sidorchuk Gully Erosion and Thermo-erosion Modelling for the Conditions of the Modern and the Late-Glacial Periglacial Climate / A. Sidorchuk

Note: Contents Part I Defining the Problem 1 Introduction 1.1 A Comment on the Guide 1.2 If You Are Studying for a PhD 1.3 If You Are a PhD Supervisor or PhD Course Coordinator 1.4 If You Are a Concerned Friend or Family Member References 2 Challenging Perceptions: What Is Mental Health Anyway? 2.1 The Mental Health Continuum 2.2 Barriers to Seeking Help 2.3 Recognising the Signs 2.4 Helping Others 2.5 What Mental Health Isn’t 2.6 To Declare or Not to Declare?: That Is the Question References 3 Setting the Scene: Understanding the PhD Mental Health Crisis 3.1 Exploring the Data 3.2 What Is the Cause? 3.3 Research Culture 3.4 The Ups and Downs of the PhD Journey 3.5 There Is Hope References Part II Mindset Matters 4 Self-Care: Without You There Is No PhD 4.1 Setting the Foundations 4.2 Establishing a Good Sleep Schedule 4.3 Eat Nutritious Food 4.4 Physical Exercise 4.5 Managing Finances 4.6 Examples of Self-Care 4.7 Putting Self-Care in Context of a PhD 4.8 Acknowledging There May Be a Problem: Addiction 4.9 Setting Boundaries 4.10 What to Do If You Reach Burnout 4.11 Navigating Self-Care as a Part-Time PhD Student References 5 Not Another Yoga Session: University Wellbeing Programs and Why They so Often Miss the Mark 5.1 Reactive Not Proactive 5.2 Trying Something New 5.3 Building Resilience 5.4 The Darker Side of Resilience References 6 “I’ll Read It Later” and Other Lies We Tell Ourselves: Managing Expectations and Guilt 6.1 Starting Out 6.2 Changing the World 6.3 Planning Your PhD 6.4 You Are Entitled to (and Deserve) Breaks 6.5 Becoming an Expert 6.6 First Time Failing 6.7 Be Grateful (or Else) 6.8 Productivity and Time Management 6.9 Prioritising References 7 Why You Earned It: Fighting the Impostor 7.1 Understanding the Value You Bring 7.2 Receiving Recognition 7.3 Receiving Critique 7.4 Comparing Yourself With Others 7.5 Asking for Help 7.6 Redefining Your Self-Worth 7.7 Perfectionism 7.8 Email ‘Anxiety’ 7.9 Presentation Nerves 7.10 Fighting Back 7.11 Discriminatory Gaslighting References Part III Environmental Stressors 8 Dismantling the Ivory Tower: Systemic Issues That Might Impact Your Mental Health 8.1 The Ivory Tower 8.2 Systemic Racism 8.3 Gender Discrimination 8.4 Sexual Harassment 8.5 Bullying 8.6 LGBT+ Discrimination 8.7 Being “First Generation” 8.8 Classism 8.9 Financial Concerns 8.10 Ableism, Disability and Neurodivergence 8.11 Ageism 8.12 Isolation and Culture Shock 8.13 A Comment on Intersectionality 8.14 Changing the Research Culture 8.15 In the Meantime, What Can You Do? 8.16 Finding Light in a Dark Place References 9 Perhaps It’s Not You It’s Them: PhD Student-Supervisor Relationships 9.1 Choosing Your Supervisor 9.2 The Role of a PhD Supervisor 9.3 Understanding What Makes a Supportive Supervisor 9.4 At Odds 9.5 The Flaw in the System 9.6 Identifying Your Supervisor’s Working Style 9.7 Pervasive, Damaging Biases 9.8 When Things Go Seriously Wrong (and It Is Definitely not Your Fault) 9.9 What You Can Do If Your Supervisor Is Abusive 9.10 Effective Communication 9.11 What to Do if You Have a Disagreement References 10 Publish or Perish: On the Myth of Meritocracy 10.1 It Is Not an Equal Playing Field 10.2 The Publication Process 10.3 Managing Reviewer 2 10.4 Publishing Options 10.5 Who Is Perishing, Anyway? 10.6 Perfectionism 10.7 Writing Your Thesis 10.8 Research Misconduct 10.9 What to Do if You Realise Research Misconduct Is Happening References 11 The High-Walled Rose Garden: Understanding There Is Life Outside the Academy 11.1 So What Does This Mean for You and Surviving Your PhD? 11.2 Finding Out What You Truly Enjoy 11.3 Reframing Your Skillsets 11.4 Transitioning from Your PhD 11.5 Debunking the Myths 11.6 Should I Stay or Should I Go? References Part IV Seeking Help 12 Thriving, Not Just Surviving 12.1 Identifying the Problem Set 12.2 Sharing the Hypothesis with Others 12.3 Conversation Starters 12.4 Finding a Support Network 12.5 Online Communities 12.6 Speaking About Your Mental Health with Your PhD Superviso 12.7 Lack of Understanding 12.8 Seeking External Assistance to Achieve Your Goal 12.9 If You Are at Crisis Point 12.10 The Elephant in the Room 12.11 Leading the Change 12.12 Not Just Surviving References Resources

Note: Contents 1 Introduction 1.1 Complexity of the Climate System 1.2 Data Exploration, Data Mining and Feature Extraction 1.3 Major Concern in Climate Data Analysis 1.3.1 Characteristics of High-Dimensional Space Geometry 1.3.2 Curse of Dimensionality and Empty Space Phenomena 1.3.3 Dimension Reduction and Latent Variable Models 1.3.4 Some Problems and Remedies in Dimension Reduction 1.4 Examples of the Most Familiar Techniques 2 General Setting and Basic Terminology 2.1 Introduction 2.2 Simple Visualisation Techniques 2.3 Data Processing and Smoothing 2.3.1 Preliminary Checking 2.3.2 Smoothing 2.3.3 Simple Descriptive Statistics 2.4 Data Set-Up 2.5 Basic Notation/Terminology 2.5.1 Centring 2.5.2 Covariance Matrix 2.5.3 Scaling 2.5.4 Sphering 2.5.5 Singular Value Decomposition 2.6 Stationary Time Series, Filtering and Spectra 2.6.1 Univariate Case 2.6.2 Multivariate Case 3 Empirical Orthogonal Functions 3.1 Introduction 3.2 Eigenvalue Problems in Meteorology: Historical Perspective 3.2.1 The Quest for Climate Patterns: Teleconnections 3.2.2 Eigenvalue Problems in Meteorology 3.3 Computing Principal Components 3.3.1 Basis of Principal Component Analysis 3.3.2 Karhunen–Loéve Expansion 3.3.3 Derivation of PCs/EOFs 3.3.4 Computing EOFs and PCs 3.4 Sampling, Properties and Interpretation of EOFs 3.4.1 Sampling Variability and Uncertainty 3.4.2 Independent and Effective Sample Sizes 3.4.3 Dimension Reduction 3.4.4 Properties and Interpretation 3.5 Covariance Versus Correlation 3.6 Scaling Problems in EOFs 3.7 EOFs for Multivariate Normal Data 3.8 Other Procedures for Obtaining EOFs 3.9 Other Related Methods 3.9.1 Teleconnectivity 3.9.2 Regression Matrix 3.9.3 Empirical Orthogonal Teleconnection 3.9.4 Climate Network-Based Methods 4 Rotated and Simplified EOFs 4.1 Introduction 4.2 Rotation of EOFs 4.2.1 Background on Rotation 4.2.2 Derivation of REOFs 4.2.3 Computing REOFs 4.3 Simplified EOFs: SCoTLASS 4.3.1 Background 4.3.2 LASSO-Based Simplified EOFs 4.3.3 Computing the Simplified EOFs 5 Complex/Hilbert EOFs 5.1 Background 5.2 Conventional Complex EOFs 5.2.1 Pairs of Scalar Fields 5.2.2 Single Field 5.3 Frequency Domain EOFs 5.3.1 Background 5.3.2 Derivation of FDEOFs 5.4 Complex Hilbert EOFs 5.4.1 Hilbert Transform: Continuous Signals 5.4.2 Hilbert Transform: Discrete Signals 5.4.3 Application to Time Series 5.4.4 Complex Hilbert EOFs 5.5 Rotation of HEOFs 6 Principal Oscillation Patterns and Their Extension 6.1 Introduction 6.2 POP Derivation and Estimation 6.2.1 Spatial Patterns 6.2.2 Time Coefficients 6.2.3 Example 6.3 Relation to Continuous POPs 6.3.1 Basic Relationships 6.3.2 Finite Time POPs 6.4 Cyclo-Stationary POPs 6.5 Other Extensions/Interpretations of POPs 6.5.1 POPs and Normal Modes 6.5.2 Complex POPs 6.5.3 Hilbert Oscillation Patterns 6.5.4 Dynamic Mode Decomposition 6.6 High-Order POPs 6.7 Principal Interaction Patterns 7 Extended EOFs and SSA 7.1 Introduction 7.2 Dynamical Reconstruction and SSA 7.2.1 Background 7.2.2 Dynamical Reconstruction and SSA 7.3 Examples 7.3.1 White Noise 7.3.2 Red Noise 7.4 SSA and Periodic Signals 7.5 Extended EOFs or Multivariate SSA 7.5.1 Background 7.5.2 Definition and Computation of EEOFs 7.5.3 Data Filtering and Oscillation Reconstruction 7.6 Potential Interpretation Pitfalls 7.7 Alternatives to SSA and EEOFs 7.7.1 Recurrence Networks 7.7.2 Data-Adaptive Harmonic Decomposition 8 Persistent, Predictive and Interpolated Patterns 8.1 Introduction 8.2 Background on Persistence and Prediction of Stationary Time Series 8.2.1 Decorrelation Time 8.2.2 The Prediction Problem and Kolmogorov Formula 8.3 Optimal Persistence and Average Predictability 8.3.1 Derivation of Optimally Persistent Patterns 8.3.2 Estimation from Finite Samples 8.3.3 Average Predictability Patterns 8.4 Predictive Patterns 8.4.1 Introduction 8.4.2 Optimally Predictable Patterns 8.4.3 Computational Aspects 8.5 Optimally Interpolated Patterns 8.5.1 Background 8.5.2 Interpolation and Pattern Derivation 8.5.3 Numerical Aspects 8.5.4 Application 8.6 Forecastable Component Analysis 9 Principal Coordinates or Multidimensional Scaling 9.1 Introduction 9.2 Dissimilarity Measures 9.3 Metric Multidimensional Scaling 9.3.1 The Problem of Classical Scaling 9.3.2 Principal Coordinate Analysis 9.3.3 Case of Non-Euclidean Dissimilarity Matrix 9.4 Non-metric Scaling 9.5 Further Extensions 9.5.1 Replicated and Weighted MDS 9.5.2 Nonlinear Structure 9.5.3 Application to the Asian Monsoon 9.5.4 Scaling and the Matrix Nearness Problem 10 Factor Analysis 10.1 Introduction 10.2 The Factor Model 10.2.1 Background 10.2.2 Model Definition and Terminology 10.2.3 Model Identification 10.2.4 Non-unicity of Loadings 10.3 Parameter Estimation 10.3.1 Maximum Likelihood Estimates 10.3.2 Expectation Maximisation Algorithm 10.4 Factor Rotation 10.4.1 Oblique and Orthogonal Rotations 10.4.2 Examples of Rotation Criteria 10.5 Exploratory FA and Application to SLP Anomalies 10.5.1 Factor Analysis as a Matrix Decomposition Problem 10.5.2 A Factor Rotation 10.6 Basic Difference Between EOF and Factor Analyses 10.6.1 Comparison Based on the Standard Factor Model 10.6.2 Comparison Based on the Exploratory Factor Analysis Model 11 Projection Pursuit 11.1 Introduction 11.2 Definition and Purpose of Projection Pursuit 11.2.1 What Is Projection Pursuit? 11.2.2 Why Projection Pursuit? 11.3 Entropy and Structure of Random Variables 11.3.1 Shannon Entropy 11.3.2 Differential Entropy 11.4 Types of Projection Indexes 11.4.1 Quality of a Projection Index 11.4.2 Various PP Indexes 11.4.3 Practical Implementation 11.5 PP Regression and Density Estimation 11.5.1 PP Regression 11.5.2 PP Density Estimation 11.6 Skewness Modes and Climate Application of PP 12 Independent Component Analysis 12.1 Introduction 12.2 Background and Definition 12.2.1 Blind Deconvolution 12.2.2 Blind Source Separation 12.2.3 Definition of ICA 12.3 Independence and Non-normality 12.3.1 Statistical Independence 12.3.2 Non-normality 12.4 Information-Theoretic Measures 12.4.1 Entropy 12.4.2 Kullback–Leibler Divergence 12.4.3 Mutual Information 12.4.4 Negentropy 12.4.5 Useful Approximations 12.5 Independent Component Estimation 12.5.1 Choice of Objective Function for ICA 12.5.2 Numerical Implementation 12.6 ICA via EOF Rotation and Weather and Climate Application 12.6.1 The Standard Two-Way Problem 12.6.2 Extension to the Three-Way Data 12.7 ICA Generalisation: Independent Subspace Analysis 13 Kernel EOFs 13.1 Background 13.2 Kernel EOFs 13.2.1 Formulation of Kernel EOFs 13.2.2 Practical Details of Kernel EOF Computation 13.2.3 Illustration with Concentric Clusters 13.3 Relation to Other Approaches 13.3.1 Spectral Clustering 13.3.2 Modularity Clustering 13.4 Pre-images in Kernel PCA 13.5 Application to An Atmospheric Model and Reanalyses 13.5.1 Application to a Simplified Atmospheric Model 13.5.2 Application to Reanalyses 13.6 Other Extensions of Kernel EOFs 13.6.1 Extended Kernel EOFs 13.6.2 Kernel POPs 14 Functional and Regularised EOFs 14.1 Functional EOFs 14.2 Functional PCs and Discrete Sampling 14.3 An Example of Functional PCs from Oceanography 14.4 Regularised EOFs 14.4.1 General Setting 14.4.2 Case of Spatial Fields 14.5 Numerical Solution of the Full Regularised EOF Problem 14.6 Application of Regularised EOFs to SLP Anomalies 15 Methods for Coupled Patterns 15.1 Introduction 15.2 Canonical Correlation Analysis 15.2.1 Background 15.2.2 Formulation of CCA 15.2.3 Computational Aspect 15.2.4 Regularised CCA 15.2.5 Use of Correlation Matrices 15.3 Canonical Covariance Analysis 15.4 Redundancy Analysis 15.4.1 Redundancy Index 15.4.2 Redundancy Analysis 15.5 Application: Optimal Lag Between Two Fields and Other Extensions 15.5.1 Application of CCA 15.5.2 Application of Redundancy 15.6 Principal Predictors 15.7 Extension: Functional Smooth CCA 15.7.1 Introduction 15.7.2 Functional Non-smooth CCA and Indeterminacy 15.7.3 Smooth CCA/MCA 15.7.4 Application of SMCA to Space–Time Fields 15.8 Some Points on Coupled Patterns and Multiva