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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Contributions to mineralogy and petrology 59 (1976), S. 41-93 
    ISSN: 1432-0967
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences
    Notes: Abstract A high-resolution study of shocked Coconino Sandstone from Meteor Crater, Arizona, was undertaken using transmission electron microscopy to investigate the textural relations of high-pressure phases produced by meteorite impact. In weakly shocked rocks (estimated average pressure, P 〈 100 kb), quartz in the interiors of grains retains its initial microstructure, but near original grain boundaries, quartz is altered by fractures and planar features resembling Brazil twins, and is partially transformed to coesite and glass. In moderately shocked rocks (estimated average pressure, 100 〈 P 〈250 kb), as much as 50% of the residual quartz is fractured but otherwise undeformed. Near grain boundaries relatively undamaged quartz exists in direct contact with coesite and stishovite. Filamentary, microvesicular “froth” fills cracks and fractures in the regions containing high-pressure phases. Coesite present in regions which are collapsed pores has a unique texture, not previously reported for a shock-formed phase: the grains are equidimensional and form a mosaic pattern characteristic of products of high-temperature recrystallization. In strongly shocked rocks (estimated pressure P 〈250 kb) quartz contains abundant glass lamellae, identical to optical “planar features” except that they are so closely spaced that they would not be resolved optically. Vesicular glassy regions in strongly shocked rocks contain remnants of large (∼5 μm) coesite crystals, indicating that the shock-formed glass in these regions formed by melting of coesite rather than quartz. The textural relationships of coesite, stishovite and glass observed in these rocks provide evidence regarding the processes of the formation and destruction of high pressure phases during the passage of a shock wave. Three types of coesite are observed: (1) Polycrystalline coesite which formed directly from quartz grains, perhaps with topotactic control; (2) Single-crystal coesite grains which have partially inverted to form thetomorphic coesite glass; (3) Well-equilibrated coesite which nucleated and grew from a hot precursor phase, believed to be amorphous silica with silicon in six-fold coordination. The texture of the stishovite, found only in the moderately shocked rocks, leads us to conclude that it formed by direct nucleation and growth from quartz grains. We believe that only a small amount of stishovite was formed and that the stishovite which was formed did not invert to glass. Three types of glass are observed: (1) Thetomorphic coesite and quartz glass, formed by the inversion of the crystalline phases; (2) Glass (lechatelierite) pervaded with relatively large spheroidal vesicles and schlieren, generally formed by melting of coesite crystals; (3) Glass (“froth”) pervaded with vesicles of irregular, generally nonspheroidal shape, having diameters of tens of Angstroms, formed by the interaction of quartz, coesite or glass with hot water vapor. A detailed description of the reaction of porous sandstone to the passage of shock waves of milliseconds duration is derived and shock Hugoniot data for single crystal quartz, water, and wet and dry rocks are reviewed in order to provide pressure estimates for each type of rock and to provide a basis for comparing naturally shocked samples with laboratory data. In weakly shocked rocks, pore closure is accomplished by brittle fracture of grains and rotation of fragments into pores. In moderately and strongly shocked rocks, pore closure is accomplished by jetting, the extrusion of molten streams of hot material into the pores, forming cores of extremely hot material from which the well-equilibrated coesite aggregates crystallized. In the moderately shocked rocks, these coesite crystals are preserved within the cores. In strongly shocked rocks, most of the coesite melts to form lechatelierite. The history of water contained within pores during passage of a shock wave is complex. In moderately shocked rocks, hot steam forms and reacts with quartz, coesite and stishovite in the vicinity of the collapsed pores. The hot steam erodes grains in some places, forming a silica-rich fluid which can subsequently be deposited in other places in the rocks. In strongly shocked rocks, silica and hot water intermix to form a super-critical SiO2-H2O solution, from which the water exsolves late in the rarefaction event to form vesicular glass.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Physics and chemistry of minerals 1 (1977), S. 137-163 
    ISSN: 1432-2021
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Geosciences , Physics
    Notes: Abstract Diopside twins mechanically on two planes, (100) and (001), and the associated macroscopic twinning strains are identical (Raleigh and Talbot, 1967). An analysis based on crystal structural arguments predicts that both twin mechanisms involve shearing of the (100) octahedral layers (containing Ca2+, Mg2+ and Fe2+ ions) by a magnitude of c/2. Small adjustments or shuffles occur in the adjacent layers containing the [SiO4]4− tetrahedral chains. While the (100) twins are conventional with shear parallel to the composition plane, this analysis predicts that (001) twins form by a mechanism closely related to kinking. A polycrystalline diopside specimen was compressed 8% at a temperature of 400° C, a pressure of 16 kilobars, and a compressive strain rate of about 10−4/s. Transmission electron microscopy on this specimen has revealed four basic lamellar features: 1) (100) mechanical twin lamellae; 2) (100) glide bands containing unit dislocations; 3) (001) twin lamellae; 4) (101) lamellar features, not as yet identified. The (001) twins often contain remnant (100) lamellae of untwinned host. Twinning dislocations occur in these (100) lamellae and in the (001) twin boundaries with very high densities. Diffraction contrast experiments indicate that the twinning dislocations associated with both twin laws glide on (100) with Burgers vector b=X [001] where X is probably equal to 1/2 on the basis of the structural analysis. Parallels are drawn between mechanical twinning in clinopyroxenes and clinoamphiboles. The exclusive natural occurrence of basal twins in shock-loaded clinopyroxenes and of analogous ( $$\bar 1$$ 01) twins in clinoamphiboles is given a simple explanation in terms of the relative difficulty of the “kinking” mechanism as compared to direct glide parallel to the composition plane.
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  • 3
    ISSN: 1573-5028
    Keywords: ACGT-containing element ; CHS ; G-box ; promoter structure ; UV-B light ; UV-A/blue light
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract To identify DNA sequences of the Arabidopsis thaliana chalcone synthase gene (CHS) concerned with induction by UV-B and UV-A/blue light, AtCHS promoter constructions were assayed by transient expression in protoplasts prepared from two different lines of cultured A. thaliana cells. The protoplasts responded similarly to A. thaliana leaf tissue in light-dependent CHS transcript accumulation. The reporter enzyme β-glucuronidase (GUS) was used to monitor light-responsive promoter activity. A 1972 bp promoter conferred UV-B and UV-A/blue light induction of GUS activity. Deletion to 164 bp resulted in reduced promoter strength but retention of responsiveness to UV-B and UV-A/blue light. Further deletion abolished transcriptional activity. The 164 bp promoter contains sequences closely resembling LRUPcCHS, (light-responsive unit of the Petroselinum crispum CHS promoter). This A. thaliana CHS promoter region, designated LRUAtCHS, was sufficient to confer UV-B and UV-A/blue light responsiveness to a heterologous core promoter. Mutation of sequences in LRUAtCHS corresponding to the ACGT element and the MYB recognition element of LRUPcCHS resulted in inactivation of the 164 bp and 335 bp promoter deletions. However, the mutant 668 bp promoter retained residual UV-B and UV-A/blue light-induced expression, indicating the presence of additional functional sequences upstream of −335. Mutation of a single G-box-like sequence around −442 had no effect on light responsiveness, indicating that it does not function in light regulation of this promoter. Since no difference in responsiveness to UV-B and UV-A/blue light was observed with any promoter variant, we conclude that the two phototransduction pathways regulate transcription factors which interact with common promoter elements. The results from our analysis of a A. thaliana light-responsive promoter will facilitate the study of light-dependent gene regulation by genetic means in Arabidopsis thaliana.
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  • 4
    Publication Date: 2019-06-03
    Description: The ability to enhance photosynthetic capacity remains a recognized bottleneck to improving plant productivity. Phototropin blue light receptors (phot1 and phot2) optimize photosynthetic efficiency in Arabidopsis thaliana by coordinating multiple light-capturing processes. In this study, we explore the potential of using protein engineering to improve photoreceptor performance and thereby plant growth. We demonstrate that targeted mutagenesis can decrease or increase the photocycle lifetime of Arabidopsis phototropins in vitro and show that these variants can be used to reduce or extend the duration of photoreceptor activation in planta. Our findings show that slowing the phototropin photocycle enhanced several light-capturing responses, while accelerating it reduced phototropin’s sensitivity for chloroplast accumulation movement. Moreover, plants engineered to have a slow-photocycling variant of phot1 or phot2 displayed increased biomass production under low-light conditions as a consequence of their improved sensitivity. Together, these findings demonstrate the feasibility of engineering photoreceptors to manipulate plant growth and offer additional opportunities to enhance photosynthetic competence, particularly under suboptimal light regimes.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 5
    Publication Date: 2009-04-20
    Description: The fungusPhycomyces blakesleeanusreacts to environmental signals, including light, gravity, touch, and the presence of nearby objects, by changing the speed and direction of growth of its fruiting body (sporangiophore). Phototropism, growth toward light, shares many features in fungi and plants but the molecular mechanisms remain to be fully elucidated.Phycomycesmutants with altered phototropism were isolated ≈40 years ago and found to have mutations in themadgenes. All of the responses to light inPhycomycesrequire the products of themadAandmadBgenes. We showed thatmadAencodes a protein similar to theNeurosporablue-light photoreceptor, zinc-finger protein WC-1. We show here thatmadBencodes a protein similar to theNeurosporazinc-finger protein WC-2. MADA and MADB interact to form a complex in yeast 2-hybrid assays and when coexpressed inE. coli, providing evidence that phototropism and other responses to light are mediated by a photoresponsive transcription factor complex. ThePhycomycesgenome contains 3 genes similar towc-1, and 4 genes similar towc-2, many of which are regulated by light in amadAormadBdependent manner. We did not detect any interactions between additional WC proteins in yeast 2-hybrid assays, which suggest that MADA and MADB form the major photoreceptor complex inPhycomyces. However, the presence of multiplewcgenes inPhycomycesmay enable perception across a broad range of light intensities, and may provide specialized photoreceptors for distinct photoresponses.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 6
    Publication Date: 2019-01-04
    Description: UVR8 is a plant photoreceptor protein that regulates photomorphogenic and protective responses to UV light. The inactive, homodimeric state absorbs UV-B light, resulting in dissociation into monomers, which are considered to be the active state and comprise a β-propeller core domain and intrinsically disordered N- and C-terminal tails. The C terminus is required for functional binding to signaling partner COP1. To date, however, structural studies have only been conducted with the core domain where the terminal tails have been truncated. Here, we report structural investigations of full-length UVR8 using native ion mobility mass spectrometry adapted for photoactivation. We show that, while truncated UVR8 photoconverts from a single conformation of dimers to a single monomer conformation, the full-length protein exists in numerous conformational families. The full-length dimer adopts both a compact state and an extended state where the C terminus is primed for activation. In the monomer the extended C terminus destabilizes the core domain to produce highly extended yet stable conformations, which we propose are the fully active states that bind COP1. Our results reveal the conformational diversity of full-length UVR8. We also demonstrate the potential power of native mass spectrometry to probe functionally important structural dynamics of photoreceptor proteins throughout nature.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 7
    Publication Date: 2002-05-01
    Print ISSN: 1360-1385
    Electronic ISSN: 1878-4372
    Topics: Biology , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Cell Press
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  • 8
    Publication Date: 2012-05-01
    Print ISSN: 1674-2052
    Electronic ISSN: 1752-9867
    Topics: Biology
    Published by Cell Press
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  • 9
  • 10
    Publication Date: 1964-11-01
    Print ISSN: 0022-1376
    Electronic ISSN: 1537-5269
    Topics: Geosciences
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