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  • 1
    Publication Date: 2015-05-23
    Description: Our understanding of the composition of diatom communities and their response to environmental changes is currently limited by laborious taxonomic identification procedures. Advances in molecular technologies are expected to contribute more efficient, robust and sensitive tools for the detection of these ecologically relevant microorganisms. There is a need to explore and test phylogenetic markers as an alternative to the use of rRNA genes, whose limited sequence divergence does not allow the accurate discrimination of diatoms at the species level. In this work, nine diatom species belonging to eight genera, isolated from epylithic environmental samples collected in central Italy, were chosen to implement a panel of diatoms covering the full range of ecological status of freshwaters. The procedure described in this work relies on the PCR amplification of specific regions in two conserved diatom genes, elongation factor 1-a (eEF1-a) and silicic acid transporter (SIT), as a first step to narrow down the complexity of the targets, followed by microarray hybridization experiments. Oligonucleotide probes with the potential to discriminate closely related species were designed taking into account the genetic polymorphisms found in target genes. These probes were tested, refined and validated on a small-scale prototype DNA chip. Overall, we obtained 17 highly specific probes targeting eEF1-a and SIT, along with 19 probes having lower discriminatory power recognizing at the same time two or three species. This basic array was validated in a laboratory setting and is ready for tests with crude environmental samples eventually to be scaled-up to include a larger panel of diatoms. Its possible use for the simultaneous detection of diatoms selected from the classes of water quality identified by the European Water Framework Directive is discussed.
    Print ISSN: 1661-7827
    Electronic ISSN: 1660-4601
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Medicine
    Published by MDPI Publishing
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  • 2
    Publication Date: 2015-05-07
    Description: A few diatom species produce toxins that affect human and animal health. Among these, members of the Pseudo-nitzschia genus were the first diatoms unambiguously identified as producer of domoic acid, a neurotoxin affecting molluscan shell-fish, birds, marine mammals, and humans. Evidence exists indicating the involvement of another diatom genus, Amphora, as a potential producer of domoic acid. We present a strategy for the detection of the diatom species Amphora coffeaeformis based on the development of species-specific oligonucleotide probes and their application in microarray hybridization experiments. This approach is based on the use of two marker genes highly conserved in all diatoms, but endowed with sufficient genetic divergence to discriminate diatoms at the species level. A region of approximately 450 bp of these previously unexplored marker genes, coding for elongation factor 1-a (eEF1-a) and silicic acid transporter (SIT), was used to design oligonucleotide probes that were tested for specificity in combination with the corresponding fluorescently labeled DNA targets. The results presented in this work suggest a possible use of this DNA chip technology for the selective detection of A. coffeaeformis in environmental settings where the presence of this potential toxin producer may represent a threat to human and animal health. In addition, the same basic approach can be adapted to a wider range of diatoms for the simultaneous detection of microorganisms used as biomarkers of different water quality levels.
    Print ISSN: 1661-7827
    Electronic ISSN: 1660-4601
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Medicine
    Published by MDPI Publishing
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  • 3
    Publication Date: 2015-05-22
    Print ISSN: 1661-7827
    Electronic ISSN: 1660-4601
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Medicine
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  • 4
    Publication Date: 2015-05-06
    Print ISSN: 1661-7827
    Electronic ISSN: 1660-4601
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Medicine
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  • 5
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Murphy, Brandi; Lyle, Mitchell W; Olivarez Lyle, Annette (2006): Biogenic burial across the Paleocene/Eocene boundary: Ocean Drilling Program Leg 199 Site 1221. In: Wilson, PA; Lyle, M; Firth, JV (eds.) Proceedings of the Ocean Drilling Program, Scientific Results, College Station, TX (Ocean Drilling Program), 199, 1-12, https://doi.org/10.2973/odp.proc.sr.199.215.2006
    Publication Date: 2024-01-09
    Description: The Paleocene/Eocene (P/E) boundary, at ~55 Ma, is characterized by a transient warm period lasting 10,000 yr. This interval is globally characterized by significant chemical and biological signals. Ocean Drilling Program Core 199-1221C-11X captured the P/E boundary section at a depth of 154 meters composite depth. Biogenic components of the sediment were measured across this interval in order to better define the events that occurred at the P/E boundary in the equatorial Pacific Ocean. A 26-cm interval low in CaCO3 was identified, whereas biogenic silica and organic carbon remained unchanged. Although CaCO3, biogenic silica, and organic carbon (C-org) production is controlled by different constraints, it is unlikely that an environmental factor would cease production by CaCO3-producing organisms without affecting biogenic silica or C-org production. The data indicate that the CaCO3 P/E boundary event was caused by a change in CaCO3 preservation rather than a change in CaCO3 production.
    Keywords: 199-1221C; Calcium carbonate; Carbon, inorganic, total; Carbon, organic, total; Carbon, total; Coulometry; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Joides Resolution; Leg199; North Pacific Ocean; Ocean Drilling Program; ODP; Opal, biogenic silica; Sample code/label; Sample comment
    Type: Dataset
    Format: text/tab-separated-values, 1134 data points
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  • 6
    facet.materialart.
    Unknown
    Firenze University Press
    Publication Date: 2024-03-24
    Description: An up-to-date manual conceived to guide the reader through the most interesting and recent theories in the vast field of psycho-neuro-linguistics. After a review of the latest theories on the perception and production of language in adult and developmental age, the most recent studies on the relations between anatomy and cerebral functions are also discussed, opening up new perspectives on the study of language too.
    Description: Manuale aggiornato che si prefigge di orientare il lettore tra le teorie più interessanti e recenti del vasto campo della psico-neuro-linguistica. Dopo aver passato in rassegna le ultime teorie sulla percezione e produzione del linguaggio in età adulta ed evolutiva, vengono illustrati gli studi più recenti sul rapporto fra anatomia e funzioni cerebrali che aprono nuove prospettive anche sullo studio del linguaggio.
    Keywords: noam chomsky ; sviluppo linguistico ; psicolinguistica ; psycholinguistics ; language development ; thema EDItEUR::C Language and Linguistics::CF Linguistics::CFD Psycholinguistics and cognitive linguistics::CFDC Language acquisition ; thema EDItEUR::J Society and Social Sciences::JM Psychology::JMA Psychological theory, systems, schools and viewpoints::JMAQ Cognitivism, cognitive theory
    Language: Italian
    Format: image/jpeg
    Format: image/jpeg
    Format: image/jpeg
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  • 7
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 106 (1984), S. 5041-5043 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1520-6882
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1432-0827
    Keywords: Deflazacort-Forearm ; lumbar ; mandibular BMC-Nephrotic syndrome-Prednisone
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary The long-term effects of high dose steroid treatment with either prednisone (PDN) or deflazacort (DFZ) were examined on various parts of the skeleton in 29 patients with nephrotic syndrome. All had normal skeleton at the start of the steroid treatment. At the beginning, PDN was given as 80 mg/day and tapered down to 20 mg/day for 1 year and DFZ was given in an equipotent dosage. Twenty-three patients completed 6 months of treatment, and 18 patients completed 12 months of treatment. Beside laboratory parameters to ensure the effect of treatment on the nephrotic syndrome, all had measurements of the bone mineral content (BMC) at 0, 6, and 12 months of treatment. BMC was measured by single photon absorptiometry of both forearms and by dual photon absorptiometry of the mandible, forearms, and lumbar spine. The effect of DFZ was compared to that of PDN due to a potential “calcium sparing” effect of DFZ. The therapeutical effects on the nephrotic syndrome were not different between the two drugs. Urinary 24-hour protein decreased from 9.9 to 1.1 g in the DFZ-treated patients and from 8.0 to 1.4 g in the PDN-treated patients. Plasma albumin concentration normalized in both groups. Both groups of steroid-treated patients had a significant reduction of the BMC levels in all parts of the skeleton. However, the bone decay rates per month were significantly different between different bone regions and between different drug regimes. In the forearm, the bone decay rate was 5.3%/year in the PDN group and 2.0%/year in the DFZ group (P〈0.001). In the mandible, decay rate was 7.0%/year in both groups, and in the lumbar spine it was 12.5%/year in the PDN group and 6.8%/year in the DFZ group (P〈0.01). Thus, the bone loss in the PDN-treated group was significantly higher than that of the DFZ-treated patients, despite a similar therapeutical effect on the nephrotic syndrome. Therefore, the detrimental effect of long-term steroid treatment on the skeleton may not be abolished, but can be reduced significantly by using deflazacort instead of prednisone.
    Type of Medium: Electronic Resource
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  • 10
    ISSN: 1432-0827
    Keywords: Osteoblasts ; Collagen type I ; “On gel” cultures ; Collagen sponges ; Osteocalcin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary A number of studies have demonstrated the pivotal role of collagen molecules in modulating cell growth and differentiation. In order to analyze the direct effects of collagen type I on the osteoblastic phenotype, we have devised an in vitro culture system for studying the interactions between bovine collagen type I and Saos-2 cells, a human osteoblastic cell line. Saos-2 cells were cultured both on top of collagen-coated culture dishes as well as inside a three-dimensional collagen network. Plating on dishes treated with collagen induced maximal adhesion of Saos-2 cells after 24-hour incubation. Cells cultured on collagen gel matrix expressed about 2.5-fold more alkaline phosphatase when compared with untreated plastic dishes. On collagen-coated dishes the responsiveness of Saos-2 cells to parathyroid hormone was decreased, whereas no modifications were observed in the effect of vasoactive intestinal peptide on these cells. Using a microfluorimetric measurement of DNA, an increase of proliferation was observed in Saos-2 cells cultured on collagen gel Saos-2 cells were also able to colonize collagen sponges and in this three-dimensional network they were able to synthesize osteocalcin, as assessed both by immunocytochemistry and radioimmunoassay. In this study we have demonstrated that bovine collagen type I exhibits favorable effects on attachment and functional and growth activities of a human osteoblastic cell line, encouraging its use as a bone graft material.
    Type of Medium: Electronic Resource
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