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  • 11
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    Bay of Bengal intraseasonal oscillations and the 2018 monsoon onset (2022)
    American Meteorological Society
    Details
    Publication Date: 2022-05-27
    Description: Author Posting. © American Meteorological Society, 2021. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 102(10), (2021): E1936–E1951, https://doi.org/10.1175/BAMS-D-20-0113.1.
    Description: In the Bay of Bengal, the warm, dry boreal spring concludes with the onset of the summer monsoon and accompanying southwesterly winds, heavy rains, and variable air–sea fluxes. Here, we summarize the 2018 monsoon onset using observations collected through the multinational Monsoon Intraseasonal Oscillations in the Bay of Bengal (MISO-BoB) program between the United States, India, and Sri Lanka. MISO-BoB aims to improve understanding of monsoon intraseasonal variability, and the 2018 field effort captured the coupled air–sea response during a transition from active-to-break conditions in the central BoB. The active phase of the ∼20-day research cruise was characterized by warm sea surface temperature (SST 〉 30°C), cold atmospheric outflows with intermittent heavy rainfall, and increasing winds (from 2 to 15 m s−1). Accumulated rainfall exceeded 200 mm with 90% of precipitation occurring during the first week. The following break period was both dry and clear, with persistent 10–12 m s−1 wind and evaporation of 0.2 mm h−1. The evolving environmental state included a deepening ocean mixed layer (from ∼20 to 50 m), cooling SST (by ∼1°C), and warming/drying of the lower to midtroposphere. Local atmospheric development was consistent with phasing of the large-scale intraseasonal oscillation. The upper ocean stores significant heat in the BoB, enough to maintain SST above 29°C despite cooling by surface fluxes and ocean mixing. Comparison with reanalysis indicates biases in air–sea fluxes, which may be related to overly cool prescribed SST. Resolution of such biases offers a path toward improved forecasting of transition periods in the monsoon.
    Description: This work was supported through the U.S. Office of Naval Research’s Departmental Research Initiative: Monsoon Intraseasonal Oscillations in the Bay of Bengal, the Indian Ministry of Earth Science’s Ocean Mixing and Monsoons Program, and the Sri Lankan National Aquatic Resources Research and Development Agency. We thank the Captain and crew of the R/V Thompson for their help in data collection. Surface atmospheric fields included fluxes were quality controlled and processed by the Boundary Layer Observations and Processes Team within the NOAA Physical Sciences Laboratory. Forecast analysis was completed by India Meteorological Department. Drone image was taken by Shreyas Kamat with annotations by Gualtiero Spiro Jaeger. We also recognize the numerous researchers who supported cruise- and land-based measurements. This work represents Lamont-Doherty Earth Observatory contribution number 8503, and PMEL contribution number 5193.
    Description: 2022-04-01
    Keywords: Atmosphere-ocean interaction ; Monsoons ; In situ atmospheric observations ; In situ oceanic observations
    Repository Name: Woods Hole Open Access Server
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  • 12
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    Moored observations of the surface meteorology and air-sea fluxes in the Northern Bay of Bengal in 2015 (2019)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(2), (2019): 549-573. doi: 10.1175/JCLI-D-18-0413.1.
    Description: Time series of surface meteorology and air–sea fluxes from the northern Bay of Bengal are analyzed, quantifying annual and seasonal means, variability, and the potential for surface fluxes to contribute significantly to variability in surface temperature and salinity. Strong signals were associated with solar insolation and its modulation by cloud cover, and, in the 5- to 50-day range, with intraseasonal oscillations (ISOs). The northeast (NE) monsoon (DJF) was typically cloud free, with strong latent heat loss and several moderate wind events, and had the only seasonal mean ocean heat loss. The spring intermonsoon (MAM) was cloud free and had light winds and the strongest ocean heating. Strong ISOs and Tropical Cyclone Komen were seen in the southwest (SW) monsoon (JJA), when 65% of the 2.2-m total rain fell, and oceanic mean heating was small. The fall intermonsoon (SON) initially had moderate convective systems and mean ocean heating, with a transition to drier winds and mean ocean heat loss in the last month. Observed surface freshwater flux applied to a layer of the observed thickness produced drops in salinity with timing and magnitude similar to the initial drops in salinity in the summer monsoon, but did not reproduce the salinity variability of the fall intermonsoon. Observed surface heat flux has the potential to cause the temperature trends of the different seasons, but uncertainty in how shortwave radiation is absorbed in the upper ocean limits quantifying the role of surface forcing in the evolution of mixed layer temperature.
    Description: The deployment of the Woods Hole Oceanographic Institution (WHOI) mooring and RW and JTF were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453. DS acknowledges support from the Ministry of Earth Sciences under India’s National Monsoon Mission. HS acknowledges support from the Office of Naval Research Grants N00014-13-1-0453 and N00014-17-12398. The deployment of the WHOI mooring was done by RV Sagar Nidhi and the recovery by RV Sagar Kanya; the help of the crew and science parties is gratefully acknowledged as is the ongoing support at NIOT in Chennai and by other colleagues in India of this mooring work. The work of the staff of the WHOI Upper Ocean Process Group in the design, building, deployment, and recovery of the mooring and in processing the data is gratefully acknowledged. The software for the wavelet analysis was provided by Torrence and Compo (1998). Feedback on the paper by Dr. Amit Tandon and two anonymous reviewers is gratefully acknowledged. This paper is dedicated to Dr. Frank Bradley.
    Description: 2019-06-28
    Keywords: Atmosphere-ocean interaction ; Monsoons ; Air-sea interaction ; Surface fluxes
    Repository Name: Woods Hole Open Access Server
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  • 13
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    A genetically encoded tool for reconstituting synthetic modulatory neurotransmission and reconnect neural circuits in vivo (2021)
    Nature Research
    Details
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hawk, J. D., Wisdom, E. M., Sengupta, T., Kashlan, Z. D., & Colon-Ramos, D. A. A genetically encoded tool for reconstituting synthetic modulatory neurotransmission and reconnect neural circuits in vivo. Nature Communications, 12(1), (2021): 4795, https://doi.org/10.1038/s41467-021-24690-9.
    Description: Chemogenetic and optogenetic tools have transformed the field of neuroscience by facilitating the examination and manipulation of existing circuits. Yet, the field lacks tools that enable rational rewiring of circuits via the creation or modification of synaptic relationships. Here we report the development of HySyn, a system designed to reconnect neural circuits in vivo by reconstituting synthetic modulatory neurotransmission. We demonstrate that genetically targeted expression of the two HySyn components, a Hydra-derived neuropeptide and its receptor, creates de novo neuromodulatory transmission in a mammalian neuronal tissue culture model and functionally rewires a behavioral circuit in vivo in the nematode Caenorhabditis elegans. HySyn can interface with existing optogenetic, chemogenetic and pharmacological approaches to functionally probe synaptic transmission, dissect neuropeptide signaling, or achieve targeted modulation of specific neural circuits and behaviors.
    Description: This work was initiated in the Grass Laboratory at the Marine Biological Laboratories (MBL) with funding through a Grass Fellowship awarded to J.D.H. Thanks to Richard Goodman (OHSU) for encouragement during the conceptualization of the fellowship application, and the 2019 Grass Fellows, Mel Coleman (Grass Director), and Christophe Dupré (Associate Director) for advice and support during the summer fellowship. We thank the MBL Division of Education and participants in the Vendor Equipment Loan Program. Special thanks to Sutter Instruments, who generously provided all electrophysiology equipment and substantial on-site assistance, and Zeiss, who provided on-site assistance at MBL. We thank Zhao-Wen Wang and Ping Liu (UConn) for guidance and training in patch-clamp electrophysiology, as well as providing Neuro2a cells. We thank Rob Steele (UCI) for supplying Hydra, as well as advice and inspiration on Hydra biology. We thank members of the Colón-Ramos lab and Hari Shroff (NIH) for thoughtful comments on the manuscript. We thank Michael Koelle and Andrew Olson (Yale University) for advice and reagents regarding serotonin rewiring experiments. We also thank Steve Flavell (MIT) for ideas and reagents regarding the experiments associated with del-7. We thank Life Science Editors for editing assistance. D.A.C.-R. is an MBL Fellow. Research in the D.A.C.-R. lab was supported by NIH R01NS076558, DP1NS111778, and by an HHMI Scholar Award.
    Repository Name: Woods Hole Open Access Server
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  • 14
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    Adrift upon a salinity-stratified sea : a view of upper-ocean processes in the Bay of Bengal during the southwest monsoon (2016)
    The Oceanography Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 134–145, doi:10.5670/oceanog.2016.46.
    Description: The structure and variability of upper-ocean properties in the Bay of Bengal (BoB) modulate air-sea interactions, which profoundly influence the pattern and intensity of monsoonal precipitation across the Indian subcontinent. In turn, the bay receives a massive amount of freshwater through river input at its boundaries and from heavy local rainfall, leading to a salinity-stratified surface ocean and shallow mixed layers. Small-scale oceanographic processes that drive variability in near-surface BoB waters complicate the tight coupling between ocean and atmosphere implicit in this seasonal feedback. Unraveling these ocean dynamics and their impact on air-sea interactions is critical to improving the forecasting of intraseasonal variability in the southwest monsoon. To that end, we deployed a wave-powered, rapidly profiling system capable of measuring the structure and variability of the upper 100 m of the BoB. The evolution of upper-ocean structure along the trajectory of the instrument’s roughly two-week drift, along with direct estimates of vertical fluxes of salt and heat, permit assessment of the contributions of various phenomena to temporal and spatial variability in the surface mixed layer depth. Further, these observations suggest that the particular “barrier-layer” stratification found in the BoB may decrease the influence of the wind on mixing processes in the interior, thus isolating the upper ocean from the interior below, and tightening its coupling to the atmosphere above.
    Description: This work was accomplished with Office of Naval Research support under the umbrella of the Air-Sea Interactions Regional Initiative (ASIRI). AJL was specifically supported by ONR Grant N00014-13-1-0489.
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  • 15
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    Bay of Bengal : 2013 northeast monsoon upper-ocean circulation (2016)
    The Oceanography Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 82–91, doi:10.5670/oceanog.2016.41.
    Description: The upper 200 m of the two northern Indian Ocean embayments, the Bay of Bengal (BoB) and the Arabian Sea (AS), differ sharply in their salinity stratification, as the Asian monsoon injects massive amounts of freshwater into the BoB while removing freshwater via evaporation from the AS. The ocean circulation transfers salt from the AS to the BoB and exports freshwater from the BoB to mitigate the salinity difference and reach a quasi-steady state, albeit with strong seasonality. An energetic field of mesoscale features and an intrathermocline eddy was observed within the BoB during the R/V Revelle November and December 2013 Air-Sea Interactions Regional Initiative cruises, marking the early northeast monsoon phase. Mesoscale features, which display a surprisingly large thermohaline range within their confines, obscure the regional surface water and thermohaline stratification patterns, as observed by satellite and Argo profilers. Ocean processes blend the fresh and salty features along and across density surfaces, influencing sea surface temperature and air-sea flux. Comparing the Revelle observations to the Argo data reveals a general westward migration of mesoscale features across the BoB.
    Description: Support for Bay of Bengal research is provided by the Office of Naval Research. ALG award number N00014-14-10065. AM and MF award number N00014-13-10451 and for MF a WHOI summer student fellowship. ES award number N00014-14-10236.
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  • 16
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    Technological advancements in observing the upper ccean in the Bay of Bengal : education and capacity building (2016)
    The Oceanography Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 242–253, doi:10.5670/oceanog.2016.56.
    Description: Because the monsoon strongly affects India, there is a clear need for indigenous expertise in advancing the science that underlies monsoon prediction. The safety of marine transport in the tropics relies on accurate atmospheric and ocean environment predictions on weekly and longer time scales in the Indian Ocean. This need to better forecast the monsoon motivates the United States to advance basic research and support training of early career US scientists in tropical oceanography. Earlier Indian field campaigns and modeling studies indicated that an improved understanding of the interactions between the upper ocean and the atmosphere in the Bay of Bengal at finer spatial and temporal scales could lead to improved intraseasonal monsoon forecasts. The joint US Air-Sea Interactions Regional Initiative (ASIRI) and the Indian Ocean Mixing and Monsoon (OMM) program studied these interactions, resulting in scientific advances described by articles in this special issue of Oceanography. In addition to these scientific advances, and while also developing long-lasting collaborations and building indigenous Indian capability, a key component of these programs is training early career scientists from India and the United States. Training has been focusing on fine-scale and mixing studies of the upper ocean, air-sea interactions, and marine mammal research. Advanced methods in instrumentation, autonomous robotic platforms, experimental design, data analysis, and modeling have been emphasized. Students and scientists from India and the United States at all levels have been participating in joint cruises on Indian and US research vessels and in training participants in modern tools and methods at summer schools, at focused research workshops, and during research visits. Such activities are building new indigenous capability in India, training a new cadre of US scientists well versed in monsoon air-sea interaction, and forging strong links between Indian and US oceanographic institutions.
    Description: We are grateful for the support of the administration of NARA
    Repository Name: Woods Hole Open Access Server
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  • 17
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    Differential adhesion regulates neurite placement via a retrograde zippering mechanism (2022)
    eLife Sciences Publications
    Details
    Publication Date: 2022-06-06
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sengupta, T., Koonce, N. L., Vazquez-Martinez, N., Moyle, M. W., Duncan, L. H., Emerson, S. E., Han, X., Shao, L., Wu, Y., Santella, A., Fan, L., Bao, Z., Mohler, W. A., Shroff, H., & Colon-Ramos, D. A. Differential adhesion regulates neurite placement via a retrograde zippering mechanism. Elife, 10, (2021): e71171, https://doi.org/10.7554/eLife.71171.
    Description: During development, neurites and synapses segregate into specific neighborhoods or layers within nerve bundles. The developmental programs guiding placement of neurites in specific layers, and hence their incorporation into specific circuits, are not well understood. We implement novel imaging methods and quantitative models to document the embryonic development of the C. elegans brain neuropil, and discover that differential adhesion mechanisms control precise placement of single neurites onto specific layers. Differential adhesion is orchestrated via developmentally regulated expression of the IgCAM SYG-1, and its partner ligand SYG-2. Changes in SYG-1 expression across neuropil layers result in changes in adhesive forces, which sort SYG-2-expressing neurons. Sorting to layers occurs, not via outgrowth from the neurite tip, but via an alternate mechanism of retrograde zippering, involving interactions between neurite shafts. Our study indicates that biophysical principles from differential adhesion govern neurite placement and synaptic specificity in vivo in developing neuropil bundles.
    Description: National Institutes of Health (R24-OD01647) Zhirong Bao William Mohler Daniel A Colón-Ramos National Institutes of Health (R01NS076558) Daniel A Colón-Ramos National Institutes of Health (DP1NS111778) Daniel A Colón-Ramos Howard Hughes Medical Institute (Faculty Scholar Award) Daniel A Colón-Ramos Marine Biological Laboratory (Whitman and Fellows program) Hari Shroff Daniel A Colón-Ramos Gordon and Betty Moore Foundation (Moore Grant) Hari Shroff Daniel A Colón-Ramos Gruber Foundation (Gruber Science Fellowship) Titas Sengupta National Institutes of Health (Predoctoral Training Program in Genetics NIH 2020 T32 GM.) Noelle L Koonce National Institutes of Health (F32-NS098616) Mark W Moyle National Institutes of Health (NIBIB Intramural Research Program) Hari Shroff National Institutes of Health (P30CA008748) Zhirong Bao
    Repository Name: Woods Hole Open Access Server
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  • 18
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    ASIRI : an ocean–atmosphere initiative for Bay of Bengal (2017)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 97 (2016): 1859–1884, doi:10.1175/BAMS-D-14-00197.1.
    Description: Air–Sea Interactions in the Northern Indian Ocean (ASIRI) is an international research effort (2013–17) aimed at understanding and quantifying coupled atmosphere–ocean dynamics of the Bay of Bengal (BoB) with relevance to Indian Ocean monsoons. Working collaboratively, more than 20 research institutions are acquiring field observations coupled with operational and high-resolution models to address scientific issues that have stymied the monsoon predictability. ASIRI combines new and mature observational technologies to resolve submesoscale to regional-scale currents and hydrophysical fields. These data reveal BoB’s sharp frontal features, submesoscale variability, low-salinity lenses and filaments, and shallow mixed layers, with relatively weak turbulent mixing. Observed physical features include energetic high-frequency internal waves in the southern BoB, energetic mesoscale and submesoscale features including an intrathermocline eddy in the central BoB, and a high-resolution view of the exchange along the periphery of Sri Lanka, which includes the 100-km-wide East India Coastal Current (EICC) carrying low-salinity water out of the BoB and an adjacent, broad northward flow (∼300 km wide) that carries high-salinity water into BoB during the northeast monsoon. Atmospheric boundary layer (ABL) observations during the decaying phase of the Madden–Julian oscillation (MJO) permit the study of multiscale atmospheric processes associated with non-MJO phenomena and their impacts on the marine boundary layer. Underway analyses that integrate observations and numerical simulations shed light on how air–sea interactions control the ABL and upper-ocean processes.
    Description: This work was sponsored by the U.S. Office of Naval Research (ONR) in an ONR Departmental Research Initiative (DRI), Air–Sea Interactions in Northern Indian Ocean (ASIRI), and in a Naval Research Laboratory project, Effects of Bay of Bengal Freshwater Flux on Indian Ocean Monsoon (EBOB). ASIRI–RAWI was funded under the NASCar DRI of the ONR. The Indian component of the program, Ocean Mixing and Monsoons (OMM), was supported by the Ministry of Earth Sciences of India.
    Description: 2017-04-22
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  • 19
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    Freshwater in the Bay of Bengal : its fate and role in air-sea heat exchange (2016)
    The Oceanography Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 72–81, doi:10.5670/oceanog.2016.40.
    Description: The strong salinity stratification in the upper 50–80 m of the Bay of Bengal affects the response of the upper ocean to surface heat fluxes. Using observations from November to December 2013, we examine the effect of surface cooling on the temperature structure of the ocean in a one-dimensional framework. The presence of freshwater adds gravitational stability to the density stratification and prevents convective overturning, even when the surface becomes cooler than the subsurface. This stable salinity stratification traps heat within subsurface layers. The ocean’s reluctance to release the heat trapped within these subsurface warm layers can contribute to delayed rise in surface temperature and heat loss from the ocean as winter progresses. Understanding the dispersal of freshwater throughout the bay can help scientists assess its potential for generating the anomalous temperature response. We use the Aquarius along-track surface salinity and satellite-derived surface velocities to trace the evolution and modification of salinity in the Lagrangian frame of water parcels as they move through the bay with the mesoscale circulation. This advective tracking of surface salinities provides a Lagrangian interpolation of the monthly salinity fields in 2013 and shows the evolution of the freshwater distribution. The along-trajectory rate of salinification of water as it leaves the northern bay is estimated and interpreted to result from mixing processes that are likely related to the host of submesoscale signatures observed during our field campaigns.
    Description: This work was supported by the Office of Naval Research (grant N000141310451).
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