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  • 11
    ISSN: 0030-493X
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Organic compounds containing active hydrogens (e.g. imino, amino, carboxylic acid and hydroxy functional groups) undergo hydrogen-deuterium (H-D) exchange reactions in the course of argon ion bombardment in molecular secondary in mass spectrometry (SIMS) when examined as solids in solid ND4Cl matrix. The positive-ion SIMS spectra of non-ionic compounds (M) display ions resulting from exchange of active hydrogens in both the deuterated ((M + D)+) and cationized ((Ag + M)+ and (C+ + M)+) forms, while ionic compounds display exchange products in the intact cation (C+, where C = cation). Analogous H-D exchange is observed in the negative SIMS spectra of compounds bearing active hydrogen atoms. The fact that the exchange reactions are dependent on the primary ion dose demonstrates that they occur in the energized sample and not prior to ion bombardment. Information on the mechanisms of interfacial reactions, insights into the SIMS mechanism and confirmation of the number of acidic hydrogens in non-volatile organic ompounds are revealed by this experiment.
    Additional Material: 6 Ill.
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  • 12
    ISSN: 1076-5174
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Ion-molecule reactions occurring in a pentaquadrupole mass spectrometer are used to generate and characterize ions in which one or two pyridine molecules are bound by a +CN cation. Cyanide cation binds strongly to the nitrogen atom of pyridine to generate a mono-adduct, which undergoes pyridine exchange reactions and from which one can generate the dipyridine adduct in low abundance. The dimeric ions have two structures, loosely bound and covalently bound, and both fragment to yield the constituent cyanide-bound monomers. In the case of dimers comprised of meta-substituted alkylpyridines, there is a quantitative correlation between relative cyanide cation affinity, as measured using the kinetic method, and literature values of relative proton affinities. These dimers fragment analogously to the corresponding H+- and Cl+- bound dimers, and on this basis are assigned analogous structures, viz. the loosely bound form Py1—+CN—Py2. Semi-empirical molecular orbital calculations show that both pyridines are bound to the carbon atom of the cyanide cation. Making the assumption that the effective temperatures of the activated cyanide-bound dimers are similar to those of the corresponding Cl+- and H+-bound dimers, relative +CN cation affinities are estimated to be 1.5 kcal mol-1 (3-MePy), 1.7 kcal mol-1 (4-MePy), 2.6 kcal mol-1 (3-EtPy), 3.5 kcal mol-1 (3-n-BuPy) and 3.6 kcal mol-1 (3,5-diMePy), all expressed relative to pyridine (1 kcal = 4.184 kJ). A linear relationship between the relative +CN affinity and relative proton affinity (PA) is derived as Δ +CN affinity (kcal mol-1) = 0.78 (ΔPA), with the assumption that the +CN dimer effective temperature is 600 K. The estimated uncertainty is 0.5 kcal mol-1. Relative +CN affinities of pairs of pyridines are smaller by ca. 1 kcal mol-1 than the corresponding Cl+ affinities. Dimers in which one of the pyridines is meta-chlorine- or para-alkyl-substituted have the covalently bound, ring-carbon-substituted structure, in which the +CN group is attached to the pyridine nitrogen and the second pyridine molecule is bound to a ring carbon. The fragmentation of these isomeric dimers yields the corresponding monomers, in addition to other minor ions, but the distribution of the cyanide cation between the two pyridines does not correlate with Cl+ affinity or proton affinity. In the special cases of the 3-methylpyridine-3-n-butylpyridine and the 4-methylpyridine-pyridine cyanide cation adducts, both the loosely bound dimer and the covalently bound adduct are generated and distinguished by their fragmentation behavior. Evidence for the formation of the covalently bound, ring-carbon-substituted structure was also obtained in semi empirical AMI calculations.
    Additional Material: 5 Ill.
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  • 13
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 2 (1988), S. 67-68 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: We have measured the sputtering yields of ammonium chloride and of frozen glycerol films under 8 keV Ar+· bombardment using a thin film depth profiling technique. The sputtering yield of ammonium chloride was 34±3 molecules (NH4Cl)/ion; for frozen glycerol the sputter yield was 54±9 molecules/ion. The results constrain possible mechanisms of damage suppression in organic secondary ion mass spectrometry.
    Additional Material: 1 Tab.
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  • 14
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 2 (1988), S. 105-109 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Additional Material: 5 Ill.
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  • 15
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 3 (1989), S. 50-53 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: A quadrupole ion-trap mass spectrometer having half the dimensions of the commercial ion-trap instrument has been built. When operated in the mass-selective instability mode using the commercial electronics and data system and the standard vacuum system, it yields a mass range of 〉 2500 Da. This represents achievement of the expected fourfold increase in mass range upon halving the trap radius (to 0.5 cm). The sensitivity of the miniature trap is comparable to that of the commercial ion-trap; however, resolution is inferior, partly due to the high mass-scan rate. The effects of using relatively high pressures of helium as a buffer gas are discussed in relation to improving sensitivity and resolution. The use of the high-mass ion-trap as a device for studying biomolecules is discussed and methods of extending the mass range even further are suggested.
    Additional Material: 4 Ill.
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  • 16
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 6 (1992), S. 524-527 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: Mass Measurement accuracy of better than 0.015% on protonated gramicidin S (nominal chemical average molecular weight 1141.5 Da) and its first three isotopes has been achieved using reasonant ion ejection in the quadrupole ion-trap mass spectrometer operated at unit resolution. Analyte and Calibrant ions are subjected to identical injection and trapping conditions when desorbed by Cs+ ions from a split prone-tip and co-injected into the trap. When the mass analysis scan rate is slowed, enhanced resolution is achieved for all ions but the mass range accessed in a single scan of the digital-to-analog converter, which controls the mass analysis scan, is limited making calibration difficult. A peak-matching procedure is described for use at these higher resolution conditions in which the offset voltage which determines the origin of the RF amplitude ramp is adjusted in such a fashion that the analyte and calibrant ions occur at the same point in the mass analysis scan. This procedure gave an improved mass measurement accuracy of better than 0.007% for the protonated gramicidin S. ions.
    Additional Material: 3 Ill.
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  • 17
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 8 (1994), S. 451-454 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: Mass spectra recorded using a Paul ion trap, operated in the mass-selective instability scan mode, give peak positions which are shown to depend on ion abundance. The isolated molecular ions of benzene, anisole, cresol, and n-butylbenzene are ejected during the mass selective instability scan at times which display a linear dependence on ion abundance for low populations of trapped ions. Remarkably, the degree to which the peaks are shifted is also compound dependent. Mass shifts are also influenced by the presence of other ions in the trap and this effect is amplified as the mass difference between the analyte and matrix ions decreases. Mass shifts are also affected by the helium pressure which controls the ion density. Extrapolation to zero ion abundance and to zero helium pressure is suggested as a method of eliminating these effects and hence of improving the mass measurement accuracy attainable using the ion trap.
    Additional Material: 6 Ill.
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  • 18
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 9 (1995), S. 911-915 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Notes: This Communication describes the use of a bench-top ion trap mass spectrometer for the study of structurally diagnostic ion/molecule reactions. The power of the experiment is increased by the broad-band ion-isolation and tandem mass spectrometry capabilities of the ion trap which are used to isolate the reactant ion and study its reactions under controlled conditions. The availability of multiple-stage mass spectrometry (MSn where n = number of stages) provides additional information on the nature of the productions. The compound to be ionized is conveniently introduced into the ion trap from aqueous solution using membrane introduction techniques while the neutral reagent is leaked into the trap through the calibration gas inlet. Polar Diels-Alder reactions of the [4 + 2+] type are investigated and comparisons are made between the reactions occurring in the ion trap and those in a pentaquadrupole mass spectrometer. Three-stage tandem mass spectra (MS3) are used to characterize the ion/molecule reaction products in the quadrupole ion trap.
    Additional Material: 6 Ill.
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  • 19
    ISSN: 1052-9306
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: When melatonin is reacted with pentafluoropropionic anhydride for selected ion monitoring or electron capture gas chromatographic analysis a volatile product results. Examination of the product by combined gas chromatography mass spectrometry has established that the molecular weight of 360 corresponds to the addition of one molecule of pentafluoropropionic acid followed by dehydration. Further spectroscopic and chemical examination using mass spectrometry and nuclear magnetic resonance with isotopic labelling has established that the product is a 3,3-spirocyclic indole derivative. Several analogous compounds were also examined and their mass spectra studied.
    Additional Material: 5 Ill.
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  • 20
    ISSN: 1052-9306
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mass spectrometry provides an extremely sensitive method for the identification and quantification of modified nucleosides and hence for determining chemical modifications of nucleic acids. When mass spectrometry is used in conjunction with a new high-performance liquid chromatographic system capable of separating 15 methylated and naturally occurring nucleosides, this allows the quantification of products of in vitro DNA methylation. With synthetic (2H3)methyl-labeled methylnucleosides as internal references, the distribution of methylated products formed when calf thymus DNA was reacted with N-methyl-N-nitrosourea(MeNU) was determined. Five modified products, 1-methyldeoxyadenosine(m1dA), 3-methyldeoxycytidine(m3dC), 7-methyldeoxyguanosine(m7dG), 3-methylthymidine(m3T) and O4-methylthymidine(m4T) were detected and the relative distributions were measured. The ability of mass spectrometry/mass spectrometry (tandem mass spectrometry) to increase specificity and sensitivity in this determination is demonstrated and its application to in vivo studies is suggested.
    Additional Material: 5 Ill.
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