ALBERT

Beschreibung: Ferns are one of the few remaining major clades of land plants for which a complete genome sequence is lacking. Knowledge of genome space in ferns will enable broad-scale comparative analyses of land plant genes and genomes, provide insights into genome evolution across green plants, and shed light on genetic and genomic features that characterize ferns, such as their high chromosome numbers and large genome sizes. As part of an initial exploration into fern genome space, we used a whole genome shotgun sequencing approach to obtain low-density coverage (~0.4X to 2X) for six fern species from the Polypodiales ( Ceratopteris , Pteridium , Polypodium , Cystopteris ), Cyatheales ( Plagiogyria ), and Gleicheniales ( Dipteris ). We explore these data to characterize the proportion of the nuclear genome represented by repetitive sequences (including DNA transposons, retrotransposons, ribosomal DNA, and simple repeats) and protein-coding genes, and to extract chloroplast and mitochondrial genome sequences. Such initial sweeps of fern genomes can provide information useful for selecting a promising candidate fern species for whole genome sequencing. We also describe variation of genomic traits across our sample and highlight some differences and similarities in repeat structure between ferns and seed plants.

Beschreibung: FOX is a family of block ciphers published in 2004 and several attacks on reduced FOX have been published, and the best known attacks are on 7-round FOX64 and 5-round FOX128. In this paper, we present impossible differential attacks on 8-round FOX64 and 6-round FOX128 with various techniques such as the multiple differentials, the state-test technique, the quick sort method and the early abort technique. For 8-round FOX64, the data complexity and the time complexity is $2^{42}$ and $2^{239.54}$ one-round encryptions, respectively, and the memory required is $2^{44}$ bytes. For 6-round FOX128, the data complexity and the time complexity is $2^{75}$ and $2^{209.55}$ one-round encryptions, respectively, and the memory required is $2^{77}$ bytes.

Beschreibung: Iron low-ionization broad absorption lines (FeLoBALs) trace a rare class of quasar outflows with large column densities and potentially large kinetic energies that might be important for ‘feedback’ to galaxy evolution. In order to probe the physical properties of these outflows, we conducted a multiple-epoch, absorption line variability study of 12 FeLoBAL quasars spanning a redshift range of 0.7 ≤  z  ≤ 1.9 over rest-frame time-scales of ~10 d to 7.6 yr. We detect absorption line variability with ≥8 confidence in 3 out of the 12 sources in our sample over time-scales of ~0.6 to 7.6 yr. Variable wavelength intervals are associated with ground- and excited-state Fe  ii multiplets, the Mg  ii 2796, 2803 doublet, Mg  i 2852, and excited-state Ni  ii multiplets. The observed variability along with evidence of saturation in the absorption lines favours transverse motions of gas across the line of sight as the preferred scenario, and allows us to constrain the outflow distance from the supermassive black hole to be 69, 7, and 60 pc for our three variable sources. In combination with other studies, these results suggest that the outflowing gas in FeLoBAL quasars resides on a range of scales and includes matter within tens of parsecs of the central source.

Beschreibung: Plant chloroplast genomes (plastomes) are characterized by an inverted repeat (IR) region and two larger single copy (SC) regions. Patterns of molecular evolution in the IR and SC regions differ, most notably by a reduced rate of nucleotide substitution in the IR compared to the SC region. In addition, the organization and structure of plastomes is fluid, and rearrangements through time have repeatedly shuffled genes into and out of the IR, providing recurrent natural experiments on how chloroplast genome structure can impact rates and patterns of molecular evolution. Here we examine four loci ( psbA , ycf2 , rps7 , and rps12 exon 2–3) that were translocated from the SC into the IR during fern evolution. We use a model-based method, within a phylogenetic context, to test for substitution rate shifts. All four loci show a significant, 2- to 3-fold deceleration in their substitution rate following translocation into the IR, a phenomenon not observed in any other, nontranslocated plastid genes. Also, we show that after translocation, the GC content of the third codon position and of the noncoding regions is significantly increased, implying that gene conversion within the IR is GC-biased. Taken together, our results suggest that the IR region not only reduces substitution rates, but also impacts nucleotide composition. This finding highlights a potential vulnerability of correlating substitution rate heterogeneity with organismal life history traits without knowledge of the underlying genome structure.

Beschreibung: We present long-term photometric observations of the young open cluster IC 348 with a baseline time-scale of 2.4 yr. Our study was conducted with several telescopes from the Young Exoplanet Transit Initiative (YETI) network in the Bessel R band to find periodic variability of young stars. We identified 87 stars in IC 348 to be periodically variable; 33 of them were unreported before. Additionally, we detected 61 periodic non-members of which 41 are new discoveries. Our wide field of view was the key to those numerous newly found variable stars. The distribution of rotation periods in IC 348 has always been of special interest. We investigate it further with our newly detected periods but we cannot find a statistically significant bimodality. We also report the detection of a close eclipsing binary in IC 348 composed of a low-mass stellar component ( M 0.09 M ) and a K0 pre-main-sequence star ( M 2.7 M ). Furthermore, we discovered three detached binaries among the background stars in our field of view and confirmed the period of a fourth one.

Beschreibung: The eastern Baltic (EB) cod ( Gadus morhua ) stock was depleted and overexploited for decades until the mid-2000s, when fishing mortality rapidly declined and biomass started to increase, as shown by stock assessments. These positive developments were partly assigned to effective management measures, and the EB cod was considered one of the most successful stock recoveries in recent times. In contrast to this optimistic view, the analytical stock assessment failed in 2014, leaving the present stock status unclear. Deteriorated quality of some basic input data for stock assessment in combination with changes in environmental and ecological conditions has led to an unusual situation for cod in the Baltic Sea, which poses new challenges for stock assessment and management advice. A number of adverse developments such as low nutritional condition and disappearance of larger individuals indicate that the stock is in distress. In this study, we (i) summarize the knowledge of recent changes in cod biology and ecosystem conditions, (ii) describe the subsequent challenges for stock assessment, and (iii) highlight the key questions where answers are urgently needed to understand the present stock status and provide scientifically solid support for cod management in the Baltic Sea.

Beschreibung: SUMMARY Tsunami generated by the Late Bronze Age (LBA) eruption of Thera were simulated using synthetic tide records produced for selected nearshore (∼20 m depths) sites of northern Crete, the Cyclades Islands, SW Turkey and Sicily. Inundation distances inland were also calculated along northern Crete. Modelling was performed by incorporating fully non-linear Boussinesq wave theory with two tsunamigenic mechanisms. The first involved the entry of pyroclastic flows into the sea, assuming a thick (55 m; 30 km 3 ) flow entering the sea along the south coast of Thera in three different directions all directed towards northern Crete, then a thin pyroclastic flow (1 m; 1.2 km 3 ) entering the sea along the north coast of Thera directed towards the Cyclades Islands. Flows were modelled as a solid block that slowly decelerates along a horizontal surface. The second mechanism assumed caldera collapse, of 19 km 3 and 34 km 3 modelled as a dynamic landslide producing rapid vertical displacements. Calculated nearshore wave amplitudes varied from a few metres to 28 m along northern Crete from pyroclastic flows, and up to 19 m from caldera collapse (34 km 3 volume). Inundation distances on Crete were 250–450 m. Waves produced by pyroclastic flows were highly focused, however, as a function of sea entry direction. Smaller volume pyroclastic flows produced nearshore wave amplitudes up to 4 m in the Cyclades islands north of Thera. Wave amplitudes in the Cyclades from smaller volume caldera collapse (19 km 3 ) were up to 24 m, whereas in SW Turkey were as low as 2.1 and 0.8 m (Didim and Fethye where LBA tsunami deposits have been found). Wave amplitudes for the larger volume caldera collapse (34 km 3 ) were generally 2.5–3 times larger than those generated by the smaller volume collapse (19 km 3 ). These results provide estimates for understanding possible consequences of tsunami impact in LBA coastal zones, thus providing criteria at archaeological sites for detecting inundation damage, as well as for contemporary hazard assessment; they also provide additional criteria for deciphering homogenite layers in the abyssal stratigraphy of the Ionian and eastern Mediterranean Seas.

Beschreibung: Target of rapamycin complex 1 (TORC1) is an important regulator of neuronal function. However, whereas a modest activation of the TORC1 signaling pathway has been shown to affect synaptic plasticity, learning and memory, the effect of TORC1 hypo-activation is less clear. This knowledge is particularly important since TORC1 inhibitors may hold great promise for treating a variety of disorders, including developmental disorders, aging-related disorders, epilepsy and cancer. Such treatments are likely to be long lasting and could involve treating young children. Hence, it is pivotal that the effects of sustained TORC1 inhibition on brain development and cognitive function are determined. Here, we made use of constitutive and conditional Rheb1 mutant mice to study the effect of prolonged and specific reduction in the TORC1 pathway. We show that Rheb1 mutant mice show up to 75% reduction in TORC1 signaling, but develop normally and show intact synaptic plasticity and hippocampus-dependent learning and memory. We discuss our findings in light of current literature in which the effect of pharmacological inhibition of TORC1 is studied in the context of synaptic plasticity and learning. We conclude that in contrast to TORC1 hyper-activity, cognitive function is not very sensitive to sustained and specific down-regulation of TORC1 activity.