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  • Copernicus  (8)
  • 1
    Publikationsdatum: 2020-10-21
    Beschreibung: The German Bight was exposed to record high riverine discharges in June 2013, as a result of flooding of the Elbe and Weser rivers. Several anomalous observations suggested that the hydrodynamical and biogeochemical states of the system were impacted by this event. In this study, we developed a biogeochemical model and coupled it with a previously introduced high-resolution hydrodynamical model of the southern North Sea in order to better characterize these impacts and gain insight into the underlying processes. Performance of the model was assessed using an extensive set of in situ measurements for the period 2011–2014. We first improved the realism of the hydrodynamic model with regard to the representation of cross-shore gradients, mainly through inclusion of flow-dependent horizontal mixing. Among other characteristic features of the system, the coupled model system can reproduce the low salinities, high nutrient concentrations and low oxygen concentrations in the bottom layers observed within the German Bight following the flood event. Through a scenario analysis, we examined the sensitivity of the patterns observed during July 2013 to the hydrological and meteorological forcing in isolation. Within the region of freshwater influence (ROFI) of the Elbe–Weser rivers, the flood event clearly dominated the changes in salinity and nutrient concentrations, as expected. However, our findings point to the relevance of the peculiarities in the meteorological conditions in 2013 as well: a combination of low wind speeds, warm air temperatures and cold bottom-water temperatures resulted in a strong thermal stratification in the outer regions and limited vertical nutrient transport to the surface layers. Within the central region, the thermal and haline dynamics interactively resulted in an intense density stratification. This intense stratification, in turn, led to enhanced primary production within the central region enriched by nutrients due to the flood but led to reduction within the nutrient-limited outer region, and it caused a widespread oxygen depletion in bottom waters. Our results further point to the enhancement of the current velocities at the surface as a result of haline stratification and to intensification of the thermohaline estuarine-like circulation in the Wadden Sea, both driven by the flood event.
    Print ISSN: 1726-4170
    Digitale ISSN: 1726-4189
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 2
    Publikationsdatum: 2017-03-30
    Beschreibung: Ecosystem models often rely on heuristic descriptions of autotroph growth that fail to reproduce various stationary and dynamic states of phytoplankton cellular composition observed in laboratory experiments. Here, we present the integration of an advanced phytoplankton growth model within a coupled 3-dimensional physical-biogeochemical model, and the implementation of the model system to the Southern North Sea (SNS) defined on a relatively high resolution (~ 1.5–4.5 km) curvilinear grid. The autotrophic growth model, recently introduced by Wirtz and Kerimoglu (2016), is built up on a set of novel concepts for the allocation of internal resources and operation of cellular metabolism. The coupled model system consists of the general estuarine transport model (GETM) as the hydrodynamical driver, a lower trophic level model and a simple sediment diagenesis model. We force the model system with realistic atmospheric and riverine fluxes, background turbidity caused by suspended particulate matter and open ocean boundary conditions. For a simulation for the period 2000–2010, we show that the model system satisfactorily reproduces the physical and biogeochemical states of the system, as inferred from comparisons against data from long-term monitoring stations, sparse measurements, continuous transects, and remote sensing data. In particular, the model shows high skill both in coastal and off shore waters, and captures the steep gradients in nutrient and chlorophyll concentrations observed prevalently across the coastal transition zone. We show that the cellular chlorophyll to carbon ratio show significant seasonal and lateral variability, the latter amplifying the steepness of the transitional chlorophyll gradient, thus, pointing to the relevance of resolving the physiological acclimation processes for an accurate description of biogeochemical fluxes.
    Print ISSN: 1810-6277
    Digitale ISSN: 1810-6285
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 3
    Publikationsdatum: 2017-10-12
    Beschreibung: Ecosystem models often rely on heuristic descriptions of autotrophic growth that fail to reproduce various stationary and dynamic states of phytoplankton cellular composition observed in laboratory experiments. Here, we present the integration of an advanced phytoplankton growth model within a coupled three-dimensional physical–biogeochemical model and the application of the model system to the southern North Sea (SNS) defined on a relatively high resolution (∼ 1.5–4.5 km) curvilinear grid. The autotrophic growth model, recently introduced by Wirtz and Kerimoglu (2016), is based on a set of novel concepts for the allocation of internal resources and operation of cellular metabolism. The coupled model system consists of the General Estuarine Transport Model (GETM) as the hydrodynamical driver, a lower-trophic-level model and a simple sediment diagenesis model. We force the model system with realistic atmospheric and riverine fluxes, background turbidity caused by suspended particulate matter (SPM) and open ocean boundary conditions. For a simulation for the period 2000–2010, we show that the model system satisfactorily reproduces the physical and biogeochemical states of the system within the German Bight characterized by steep salinity; nutrient and chlorophyll (Chl) gradients, as inferred from comparisons against observation data from long-term monitoring stations; sparse in situ measurements; continuous transects; and satellites. The model also displays skill in capturing the formation of thin chlorophyll layers at the pycnocline, which is frequently observed within the stratified regions during summer. A sensitivity analysis reveals that the vertical distributions of phytoplankton concentrations estimated by the model can be qualitatively sensitive to the description of the light climate and dependence of sinking rates on the internal nutrient reserves. A non-acclimative (fixed-physiology) version of the model predicted entirely different vertical profiles, suggesting that accounting for physiological flexibility might be relevant for a consistent representation of the vertical distribution of phytoplankton biomass. Our results point to significant variability in the cellular chlorophyll-to-carbon ratio (Chl : C) across seasons and the coastal to offshore transition. Up to 3-fold-higher Chl : C at the coastal areas in comparison to those at the offshore areas contribute to the steepness of the chlorophyll gradient. The model also predicts much higher phytoplankton concentrations at the coastal areas in comparison to its non-acclimative equivalent. Hence, findings of this study provide evidence for the relevance of physiological flexibility, here reflected by spatial and seasonal variations in Chl : C, for a realistic description of biogeochemical fluxes, particularly in the environments displaying strong resource gradients.
    Print ISSN: 1726-4170
    Digitale ISSN: 1726-4189
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 4
    Publikationsdatum: 2017-06-20
    Beschreibung: Shelf and coastal sea processes extend from the atmosphere through the water column and into the sea bed. These processes are driven by physical, chemical, and biological interactions at local scales, and they are influenced by transport and cross strong spatial gradients. The linkages between domains and many different processes are not adequately described in current model systems. Their limited integration level in part reflects lacking modularity and flexibility; this shortcoming hinders the exchange of data and model components and has historically imposed supremacy of specific physical driver models. We here present the Modular System for Shelves and Coasts (MOSSCO, http://www.mossco.de), a novel domain and process coupling system tailored – but not limited – to the coupling challenges of and applications in the coastal ocean. MOSSCO builds on the existing coupling technology Earth System Modeling Framework and on the Framework for Aquatic Biogeochemical Models, thereby creating a unique level of modularity in both domain and process coupling; the new framework adds rich metadata, flexible scheduling, configurations that allow several tens of models to be coupled, and tested setups for coastal coupled applications. That way, MOSSCO addresses the technology needs of a growing marine coastal Earth System community that encompasses very different disciplines, numerical tools, and research questions.
    Print ISSN: 1991-9611
    Digitale ISSN: 1991-962X
    Thema: Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 5
    Publikationsdatum: 2016-02-05
    Beschreibung: Marine coastal ecosystem functioning is crucially linked to the transport and fate of suspended particulate matter (SPM). Transport of SPM is, amongst others, controlled by sinking velocity ws. Since ws of cohesive SPM aggregates varies significantly with size and composition of mineral and organic origin, ws probably exhibits large spatial variability along gradients of turbulence, SPM concentration and SPM composition. In this study, we retrieved ws for the German Bight, North Sea, by combining measured vertical turbidity profiles with simulation results for turbulent eddy diffusivity. Analyzed with 5 respect to modeled prevailing energy dissipation rates &epsilon,, mean ws were significantly enhanced around log10(ε (m2s−3)) ≈ −5.5. This ε region is typically found at water depths of approximately 15 m to 20 m on a cross-shore transect. Across this zone, SPM concentration declines drastically towards the offshore and a change in particle composition occurs. This characterizes a transition zone with potentially enhanced vertical fluxes. Our findings contribute to the conceptual understanding of nutrient cycling in the coastal region which is as follows: Previous studies identified an estuarine circulation. Its residual landward-oriented bottom currents are likely loaded with SPM particularly within the transition zone. This retains and traps fine sediments and particulate-bound nutrients in coastal waters where organic components of SPM become re-mineralized. Residual surface currents transport dissolved nutrients towards the off-shore, where they are again consumed by phytoplankton. Algae excrete extracellular polymeric substances which are known to mediate mineral aggregation and thus sedimentation. This probably takes place particularly in the transition zone and completes the coastal nutrient cycle. The efficiency of the transition zone for retention is thus suggested as an important mechanism that underlies the often observed nutrient gradients towards the coast.
    Print ISSN: 1810-6277
    Digitale ISSN: 1810-6285
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 6
    Publikationsdatum: 2016-09-05
    Beschreibung: Marine coastal ecosystem functioning is crucially linked to the transport and fate of suspended particulate matter (SPM). Transport of SPM is controlled by, amongst other factors, sinking velocity ws. Since the ws of cohesive SPM aggregates varies significantly with size and composition of the mineral and organic origin, ws exhibits large spatial variability along gradients of turbulence, SPM concentration (SPMC) and SPM composition. In this study, we retrieved ws for the German Bight, North Sea, by combining measured vertical turbidity profiles with simulation results for turbulent eddy diffusivity. We analyzed ws with respect to modeled prevailing dissipation rates ϵ and found that mean ws were significantly enhanced around log10(ϵ (m2 s−3)) ≈ −5.5. This ϵ region is typically found at water depths of approximately 15 to 20 m along cross-shore transects. Across this zone, SPMC declines towards the offshore waters and a change in particle composition occurs. This characterizes a transition zone with potentially enhanced vertical fluxes. Our findings contribute to the conceptual understanding of nutrient cycling in the coastal region which is as follows. Previous studies identified an estuarine circulation. Its residual landward-oriented bottom currents are loaded with SPM, particularly within the transition zone. This retains and traps fine sediments and particulate-bound nutrients in coastal waters where organic components of SPM become remineralized. Residual surface currents transport dissolved nutrients offshore, where they are again consumed by phytoplankton. Algae excrete extracellular polymeric substances which are known to mediate mineral aggregation and thus sedimentation. This probably takes place particularly in the transition zone and completes the coastal nutrient cycle. The efficiency of the transition zone for retention is thus suggested as an important mechanism that underlies the often observed nutrient gradients towards the coast.
    Print ISSN: 1726-4170
    Digitale ISSN: 1726-4189
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 7
    Publikationsdatum: 2018-03-12
    Beschreibung: Shelf and coastal sea processes extend from the atmosphere through the water column and into the seabed. These processes reflect intimate interactions between physical, chemical, and biological states on multiple scales. As a consequence, coastal system modelling requires a high and flexible degree of process and domain integration; this has so far hardly been achieved by current model systems. The lack of modularity and flexibility in integrated models hinders the exchange of data and model components and has historically imposed the supremacy of specific physical driver models. We present the Modular System for Shelves and Coasts (MOSSCO; http://www.mossco.de), a novel domain and process coupling system tailored but not limited to the coupling challenges of and applications in the coastal ocean. MOSSCO builds on the Earth System Modeling Framework (ESMF) and on the Framework for Aquatic Biogeochemical Models (FABM). It goes beyond existing technologies by creating a unique level of modularity in both domain and process coupling, including a clear separation of component and basic model interfaces, flexible scheduling of several tens of models, and facilitation of iterative development at the lab and the station and on the coastal ocean scale. MOSSCO is rich in metadata and its concepts are also applicable outside the coastal domain. For coastal modelling, it contains dozens of example coupling configurations and tested set-ups for coupled applications. Thus, MOSSCO addresses the technology needs of a growing marine coastal Earth system community that encompasses very different disciplines, numerical tools, and research questions.
    Print ISSN: 1991-959X
    Digitale ISSN: 1991-9603
    Thema: Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 8
    Publikationsdatum: 2019-07-10
    Beschreibung: The study addresses the nitrogen cycling in Elbe estuary. Observations of salinity, nutrients and oxygen from moored stations, ship casts and helicopter surveys are presented. Observations are complemented by simulations obtained from a coupled physical-biogeochemical 3D unstructured model, applied for the first time to the estuarine environment. Model simulations reproduce the temporal variability of nutrients and oxygen along the estuarine salinity gradient. Both, observations and model results, demonstrate mostly conservative mixing of nitrate and non-conservative behavior of ammonium. Model hind-casts of the years 2012 and 2013 provide a detailed reconstruction of nitrogen recycling with ammonium appearing as the key species of the remineralisation process. Estuarine turnover processes are fueled by inputs of diatoms and organic nitrogen at the tidal weir with intense primary production manifest in the shallow river section downstream of the weir. The harbor area is the hot spot of heterotrophic decay associated with growth of meso-zooplankton, sedimentation of degradable material, remineralisation, oxygen depletion, denitrification and ammonium production. In the harbor, biochemistry shows strong vertical gradients while hydrodynamics demonstrate connectivity between the main channel and the harbor. At the estuary bed nitrogen is deposited during spring and early summer. Resuspension leads to nearly closed budget by the end of the year. During the Elbe flood in June 2013, estuarine biogeochemistry is significantly disturbed with the harbor being deactivated as hot spot of heterotrophic decay. Plankton and organic matter are flushed towards the outer estuary which in consequence sees high abundance of grazers, oxygen depletion and elevated release of ammonium.
    Print ISSN: 1810-6277
    Digitale ISSN: 1810-6285
    Thema: Biologie , Geologie und Paläontologie
    Publiziert von Copernicus im Namen von European Geosciences Union.
    Standort Signatur Erwartet Verfügbarkeit
    BibTip Andere fanden auch interessant ...
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