ALBERT

Description: In 2015, we have collected more than 60,000 scavenging amphipod specimens during two expeditions to the Clarion-Clipperton fracture Zone (CCZ), in the Northeast (NE) Pacific and to the DISturbance and re-COLonisation (DisCOL) Experimental Area (DEA), a simulated mining impact disturbance proxy in the Peru basin, Southeast (SE) Pacific. Here, we compare biodiversity patterns of the larger specimens (〉15mm) within and between these two oceanic basins. Nine scavenging amphipod species are shared between these two areas, thus indicating connectivity. We further provide evidence that disturbance proxies seem to negatively affect scavenging amphipod biodiversity, as illustrated by a reduced alpha biodiversity in the DEA (Simpson Index (D)=0.62), when compared to the CCZ (D=0.73) and particularly of the disturbance site in the DEA and the site geographically closest to it. Community compositions of the two basins differs, as evidenced by a Non-Metric Dimensional Scaling (NMDS) analysis of beta biodiversity. The NMDS also shows a further separation of the disturbance site (D1) from its neighbouring, undisturbed reference areas (D2, D3, D4 and D5) in the DEA. A single species, Abyssorchomene gerulicorbis, dominates the DEA with 60% of all individuals.

Description: Tidal wetlands, such as tidal marshes and mangroves, are hotspots for carbon sequestration. The preservation of organic matter (OM) is a critical process by which tidal wetlands exert influence over the global carbon cycle and at the same time gain elevation to keep pace with sea-level rise (SLR). The present study provides the first global-scale field-based experimental evidence of temperature and relative sea level effects on the decomposition rate and stabilization of OM in tidal wetlands. The study was conducted in 26 marsh and mangrove sites across four continents, utilizing commercially available standardized OM. While effects on decomposition rate per se were minor, we show unanticipated and combined negative effects of temperature and relative sea level on OM stabilization. Across study sites, OM stabilization was 29 % lower in low, more frequently flooded vs. high, less frequently flooded zones. OM stabilization declined by ~ 90 % over the studied temperature gradient from 10.9 to 28.5 °C, corresponding to a decline of ~ 5 % over a 1 °C temperature increase. Additionally, data from the long-term ecological research site in Massachusetts, US show a pronounced reduction in OM stabilization by 〉 70 % in response to simulated coastal eutrophication, confirming the high sensitivity of OM stabilization to global change. We therefore provide evidence that rising temperature, accelerated SLR, and coastal eutrophication may decrease the future capacity of tidal wetlands to sequester carbon by affecting the initial transformations of recent OM inputs to soil organic matter.

Description: In the North Ionian, water circulation is characterized by a decadal alternation of cyclonic and anticyclonic regime driven by the mechanism called BiOS (Bimodal Oscillating System). The circulation regime affects the vertical dynamics and the nutrient distribution. The North Ionian is then a good study area to investigate how changes in circulation can affect phytoplankton dynamics in oligotrophic regions. From in situ observations, for each circulation regime the averaged distribution of isopycnals is provided, and a depth difference of about 80 m is estimated for the nitracline between cyclonic and anticyclonic regime. Based on phytoplankton phenology metrics extracted from annual time-series of satellite ocean color data for the period 1998–2012, the cyclonic and anticyclonic regimes are compared. Results show that the average chlorophyll in March, the date of bloom initiation and the date of maximum chlorophyll were affected by circulation patterns in the North Ionian. In the center of the gyre, bloom initiation occurred in December and chlorophyll was low in March when circulation was anticyclonic, whereas during the cyclonic circulation regime, a late chlorophyll peak, likely resulting from different phytoplankton dynamics, was commonly observed in March. An additional analysis shows that the winter buoyancy losses, which govern the Mixed Layer Depth (MLD) also contribute to explain the interannual variability in bloom initiation and intensity. Two scenarios involving the relative position of the MLD and nitracline are finally developed, discussed and tested with model data to explain the different phenology patterns observed in the North Ionian.

Description: Microbial communities of the ocean can consume methane dissolved in seawater before it has a chance to escape to the atmosphere and contribute to greenhouse warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to the atmospheric equilibrium originating in sediments, permafrost and hydrates. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1, approximately 4.8 times oversaturated compared to the atmospheric equilibrium. The group of methane oxidizing bacteria (MOB) in the natural seawater and seawater incubations was 〉 97 % dominated by Methylococcacales (γ-Proteobacteria). Incubations of seawater under a range of methane concentrations led to a loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were four times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotrophs correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. MOB abundances were very low in sea ice, with maximal fractions found at the ice-snow interface (0.1 %), while non-MOB-methlylotrophs were present in abundances compared to natural seawater communities. The differences in MOB taxa and an offset in methane concentration and stable isotope ratios between the ice and the water column point toward different methane cycling processes in both habitats.

Description: Quantifying the saturation state of aragonite (ΩAr) within the calcifying fluid of corals is critical for understanding their biomineralisation process and sensitivity to environmental changes including ocean acidification. Recent advances in microscopy, microprobes, and isotope geochemistry allow determination of calcifying fluid pH and [CO32−], but direct quantification of ΩAr (where ΩAr =[CO32−][Ca2+]/Ksp) has proved elusive. Here we test a new technique for deriving ΩAr based on Raman spectroscopy. First, we analysed abiogenic aragonite crystals precipitated under a range of ΩAr from 10 to 34, and found a strong dependence of Raman peak width on ΩAr that was independent of other factors including pH, Mg/Ca partitioning, and temperature. Validation of our Raman technique for corals is difficult because there are presently no direct measurements of calcifying fluid ΩAr available for comparison. However, Raman analysis of the international coral standard JCp-1 produced ΩAr of 12.3 ± 0.3, which we demonstrate is consistent with published skeletal Sr/Ca, Mg/Ca, B/Ca, δ44Ca, and δ11B data. Raman measurements are rapid (≤ 1 s), high-resolution (

Description: This study reviews and synthesises existing information generated within the SCOPSCO ("Scientific Collaboration on Past Speciation Conditions in Lake Ohrid") deep drilling project. The four main aims of the project are to infer (i) the age and origin of Lake Ohrid (Former Yugoslav Republic of Macedonia/Republic of Albania), (ii) its regional seismotectonic history, (iii) volcanic activity and climate change in the central northern Mediterranean region, and (iv) the drivers of biodiversity and endemism. The Ohrid basin formed by transtension during the Miocene, opened during the Pliocene and Pleistocene, and the lake established de novo in the still relatively narrow valley between 1.9 and 1.3 Myr ago. The lake history is recorded in a 584 m long sediment sequence, which was recovered within the framework of the International Continental Scientific Drilling Program (ICDP) from the central part (DEEP site) of the lake in spring 2013. To date, 50 tephra and crypto-tephra horizons have been found in the upper 460 m of this sequence. Tephrochronology and tuning biogeochemical proxy data to orbital parameters revealed that the upper 247.8 m represent the last 637 kyr. The multi-proxy dataset covering these 637 kyr indicates long-term variability, with a change from cooler and wetter to drier and warmer glacial and interglacial periods around 300 ka. Short-term environmental change caused, for example, by tephra deposition or the climatic impact of millennial-scale Dansgaard-Oeschger and Heinrich events are superimposed on the long-term trends. Evolutionary studies on the extant fauna indicate that Lake Ohrid was not a refugial area for regional freshwater animals. This differs from the surrounding catchment, where the mountainous setting with relatively high water availability provided a refugial area for temperate and montane trees during the relatively cold and dry glacial periods. Although Lake Ohrid experienced significant environmental change over the last 637 kyr, preliminary molecular data from extant microgastropod species do not indicate significant changes in diversification rate during this period. The reasons for this constant rate remain largely unknown, but a possible lack of environmentally induced extinction events in Lake Ohrid and/or the high resilience of the ecosystems may have played a role.

Description: Phytoplankton taxonomy, pigment composition and photo-physiological state were studied in Galveston Bay (GB), Texas (USA) following the extreme flooding associated with Hurricane Harvey (August 25–29, 2017) using field and satellite ocean color observations. Percentage of chlorophyll a (Chl a) in different phytoplankton groups were determined from a semi-analytical IOP (inherent optical property) inversion algorithm. The IOP inversion algorithm revealed the dominance of freshwater species (cyanobacteria and green algae) in the bay following the hurricane passage (September 29, 2017) under low salinity conditions associated with the discharge of floodwaters into GB; 2 months after the hurricane (October 29–30, 2017), under more seasonal salinity conditions, the phytoplankton community transitioned to an increase in small sized groups such as haptophyte and prochlorophyte. Sentinel-3A OLCI-derived Chl a obtained using a red/NIR band ratio algorithm for the turbid estuarine waters was highly correlated (R2 〉 0.90) to HPLC-derived Chl a concentrations. A Non-Negative Least Square (NNLS) inversion model was then applied to OLCI-derived Chl a maps of GB to obtain spatiotemporal distributions of phytoplankton diagnostic pigments; results appeared consistent with extracted phytoplankton taxonomic composition derived from the IOP inversion algorithm. OLCI-derived diagnostic pigment distributions also exhibited good agreement with HPLC measurements, with mean R2 ranging from 0.39 for violaxanthin to 0.98 for Chl a. Environmental factors (e.g. floodwaters) combined with phytoplankton taxonomy also strongly modulated phytoplankton physiology in the bay as indicated by measurements of photosynthetic parameters with a Fluorescence Induction and Relaxation (FIRe) system. Phytoplankton in well-mixed waters (mid-bay area) exhibited maximum PSII photochemical efficiency (FV/FM) and low effective absorption cross section (δPSII), while the areas adjacent to the shelf (likely nutrient-limited) showed low FV/FM and elevated values. Overall, the approach using field and ocean color data combined with inversion models allowed, for the first time, an assessment of phytoplankton response to a large hurricane-related floodwater perturbation in a turbid estuarine environment based on its taxonomy, pigment composition and physiological state.

Description: Croplands are involved in the exchange of carbon dioxide (CO2) between the atmosphere and the biosphere. Further- more, soil carbon (C) stocks play an important role in soil fertility. It is, thus, of great interest to know whether croplands act as a net source or sink of atmospheric CO2, and if soil C stocks are preserved over long timescales. The FLUXNET site CH-Oe2 in Oensingen, Switzerland has been operational since the end of 2003. This cropland is managed under the Swiss framework of the Proof of Ecological Performance (PEP, a variant of integrated management) with a crop rotation centred on winter wheat, which also includes winter barley, winter rapeseed, peas, potato and intermediate cover crops. In addition to eddy covariance measurements, meteorological and soil measurements were available along with information on C imports and exports from organic fertilisation, sowing and harvesting. This study investigates cropland C budgets over 13 years and assesses whether the PEP regulations resulted in a balanced C budget. Strongest CO2 uptake was observed during cereal seasons. C export through harvest, however, offset the strong uptake of the cereal crops. The largest net CO2 emissions to the atmosphere were observed during pea and cover crop seasons. Net biome production, representing the overall C budget, typically ranged between close to C neutral to C losses of up to 407gCm−2 per season, with peas being the largest source. Overall, the field lost 1674gCm−2 over thirteen years (129gCm−2yr−1), which was confirmed by soil C stock measurements at the beginning and the end of the study period. Although managing the field under the regulations of PEP did not result in an overall C sink, model simulations showed that the use of cover crops reduced the C losses compared to leaving the field bare. The use of solid manure improved the C budget by importing substantial amounts of C into the soil while liquid manure had only a small effect. We thus conclude that additional efforts are needed to bring Swiss management practices closer to the goal of preserving soil C in the long-term.

Description: Large tropical trees store significant amounts of carbon in woody components and their distribution plays an important role in forest carbon stocks and dynamics. Here, we explore the properties of a new Lidar derived index, large tree canopy area (LCA) defined as the area occupied by canopy above a reference height. We hypothesize that this simple measure of forest structure representing the crown area of large canopy trees could consistently explain the landscape variations of forest volume and aboveground biomass (AGB) across a range of climate and edaphic conditions. To test this hypothesis, we assembled a unique dataset of high-resolution airborne Light Detection and Ranging (Lidar) and ground inventory data in nine undisturbed old growth Neotropical forests. We found that the LCA for trees greater than 27 m (~ 25–30 m) in height and at least 100 m2 crown size in a unit area (1 ha), explains more than 75 % of total forest volume variations, irrespective of the forest biogeographic conditions. When weighted by average wood density of the stand, LCA can be used as an unbiased estimator of AGB across all sites (R2 = 0.78, RMSE = 46.02 Mg ha−1, bias = 0.76 Mg ha−1). Unlike other Lidar derived metrics with complex nonlinear relations to biomass, the relationship between LCA and AGB is linear. A comparison with tree inventories across the study sites indicates that LCA correlates best with the crown area (or basal area) of trees with diameter 〉 50 cm. The spatial invariance of the LCA–AGB relationship across the Neotropics suggests a remarkable regularity of forest structure across the landscape and a new technique for systematic monitoring of large trees for their contribution to AGB and changes associated with selective logging, tree mortality, and other types of forest disturbance and dynamics.

Description: The present work is based on a dataset comprised of 31 Biogeochemical (BGC) Argo floats that collected 0–1000m vertical profiles of biogeochemical and optical data from 2012 to 2016 in the Mediterranean Sea. The dataset was integrated in 1-dimensional model simulations following the trajectories of each float and considering measured photosynthetically available radiation (PAR) profiles as the reference light parameterization. The simulations were aimed to be consistent with data measured by float sensors, especially in terms of the deep chlorophyll maximum (DCM) depth. Moreover, we tested several light models in order to estimate their impact on modeled biogeochemical properties, including self-shading dynamics based on chlorophyll and colored dissolved organic matter (CDOM) concentrations. The results, evaluated with the corresponding in-situ BGC-Argo chlorophyll data, indicate that the proposed approach allows to properly simulate the chlorophyll dynamics and illustrate how PAR and vertical mixing are essential environmental regulation factors driving primary producers dynamics. The higher skills are reached using in-situ PAR, but some of the alternative bio-optical models here presented show comparable skill in reproducing DCM depth spatial variability. Simulation results show that during the stratification phase the diel cycle has significant impact on the surface chlorophyll regimes. The approach here presented serves as a computationally smooth solution to analyse BGC-Argo floats data and to corroborate hypotheses on their spatio-temporal variability.