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  • 1
    Publication Date: 2023-06-20
    Description: The selection of ground motion models, and the representation of their epistemic uncertainty in the form of a logic tree, is one of the fundamental components of probabilistic seismic hazard and risk analysis. A new ground motion model (GMM) logic tree has been developed for the 2020 European seismic hazard model, which develops upon recently compiled ground motion data sets in Europe. In contrast to previous European seismic hazard models, the new ground model logic tree is built around the scaled backbone concept. Epistemic uncertainties are represented as calibrations to a reference model and aim to characterise the potential distributions of median ground motions resulting from variability in source scaling and attenuation. These scaled backbone logic trees are developed and presented for shallow crustal seismic sources in Europe. Using the new European strong motion flatfile, and capitalising on recent perspectives in ground motion modelling in the scientific literature, a general and transferable procedure is presented for the construction of a backbone model and the regionalisation of epistemic uncertainty. This innovative approach forms a general framework for revising and updating the GMM logic tree at national and European scale as new strong motion data emerge in the future.
    Description: Horizon 2020 http://dx.doi.org/10.13039/501100007601
    Keywords: ddc:551.22 ; Probabilistic seismic hazard assessment ; Ground motion models ; Epistemic uncertainty ; Regionalisation
    Language: English
    Type: doc-type:article
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  • 2
    Publication Date: 2023-06-20
    Description: To complement the new European Strong-Motion dataset and the ongoing efforts to update the seismic hazard and risk assessment of Europe and Mediterranean regions, we propose a new regionally adaptable ground-motion model (GMM). We present here the GMM capable of predicting the 5% damped RotD50 of PGA, PGV, and SA(T = 0.01 − 8 s) from shallow crustal earthquakes of 3 ≤ M W ≤ 7.4 occurring 0 〈 RJB ≤ 545 km away from sites with 90 ≤ Vs30 ≤ 3000 m s−1 or 0.001 ≤ slope ≤ 1 m m−1. The extended applicability derived from thousands of new recordings, however, comes with an apparent increase in the aleatory variability (σ). Firstly, anticipating contaminations and peculiarities in the dataset, we employed robust mixed-effect regressions to down weigh only, and not elimi nate entirely, the influence of outliers on the GMM median and σ. Secondly, we regionalised the attenuating path and localised the earthquake sources using the most recent models, to quantify region-specific anelastic attenuation and locality-specific earthquake characteristics as random-effects, respectively. Thirdly, using the mixed-effect variance–covariance structure, the GMM can be adapted to new regions, localities, and sites with specific datasets. Consequently, the σ is curtailed to a 7% increase at T 〈 0.3 s, and a sub stantial 15% decrease at T ≥ 0.3 s, compared to the RESORCE based partially non-ergodic GMM. We provide the 46 attenuating region-, 56 earthquake localities-, and 1829 site-spe cific adjustments, demonstrate their usage, and present their robustness through a 10-fold cross-validation exercise.
    Description: SIGMA2 consortium (EDF, CEA, PG&E, SwissNuclear,. Areva, CEZ, CRIEPI)
    Description: H2020 Research Infrastructures http://dx.doi.org/10.13039/100010666
    Keywords: ddc:551.22 ; Ground-motion model ; Response spectra ; Robust mixed-effects regression ; Regionally adaptable ; Seismic hazard and risk ; Europe
    Language: English
    Type: doc-type:article
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  • 3
    Publication Date: 2011-08-24
    Description: Tuberization in potato is controlled by hormonal and environmental signals. Ca(2+), an important intracellular messenger, and calmodulin (CaM), one of the primary Ca(2+) sensors, have been implicated in controlling diverse cellular processes in plants including tuberization. The regulation of cellular processes by CaM involves its interaction with other proteins. To understand the role of Ca(2+)/CaM in tuberization, we have screened an expression library prepared from developing tubers with biotinylated CaM. This screening resulted in isolation of a cDNA encoding a novel CaM-binding protein (potato calmodulin-binding protein (PCBP)). Ca(2+)-dependent binding of the cDNA-encoded protein to CaM is confirmed by (35)S-labeled CaM. The full-length cDNA is 5 kb long and encodes a protein of 1309 amino acids. The deduced amino acid sequence showed significant similarity with a hypothetical protein from another plant, Arabidopsis. However, no homologs of PCBP are found in nonplant systems, suggesting that it is likely to be specific to plants. Using truncated versions of the protein and a synthetic peptide in CaM binding assays we mapped the CaM-binding region to a 20-amino acid stretch (residues 1216-1237). The bacterially expressed protein containing the CaM-binding domain interacted with three CaM isoforms (CaM2, CaM4, and CaM6). PCBP is encoded by a single gene and is expressed differentially in the tissues tested. The expression of CaM, PCBP, and another CaM-binding protein is similar in different tissues and organs. The predicted protein contained seven putative nuclear localization signals and several strong PEST motifs. Fusion of the N-terminal region of the protein containing six of the seven nuclear localization signals to the reporter gene beta-glucuronidase targeted the reporter gene to the nucleus, suggesting a nuclear role for PCBP.
    Keywords: Life Sciences (General)
    Type: The Journal of biological chemistry (ISSN 0021-9258); Volume 277; 6; 4206-14
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  • 4
    Publication Date: 2011-08-24
    Description: Analysis of the recently completed Arabidopsis genome sequence indicates that approximately 31% of the predicted genes could not be assigned to functional categories, as they do not show any sequence similarity with proteins of known function from other organisms. Calmodulin (CaM), a ubiquitous and multifunctional Ca(2+) sensor, interacts with a wide variety of cellular proteins and modulates their activity/function in regulating diverse cellular processes. However, the primary amino acid sequence of the CaM-binding domain in different CaM-binding proteins (CBPs) is not conserved. One way to identify most of the CBPs in the Arabidopsis genome is by protein-protein interaction-based screening of expression libraries with CaM. Here, using a mixture of radiolabeled CaM isoforms from Arabidopsis, we screened several expression libraries prepared from flower meristem, seedlings, or tissues treated with hormones, an elicitor, or a pathogen. Sequence analysis of 77 positive clones that interact with CaM in a Ca(2+)-dependent manner revealed 20 CBPs, including 14 previously unknown CBPs. In addition, by searching the Arabidopsis genome sequence with the newly identified and known plant or animal CBPs, we identified a total of 27 CBPs. Among these, 16 CBPs are represented by families with 2-20 members in each family. Gene expression analysis revealed that CBPs and CBP paralogs are expressed differentially. Our data suggest that Arabidopsis has a large number of CBPs including several plant-specific ones. Although CaM is highly conserved between plants and animals, only a few CBPs are common to both plants and animals. Analysis of Arabidopsis CBPs revealed the presence of a variety of interesting domains. Our analyses identified several hypothetical proteins in the Arabidopsis genome as CaM targets, suggesting their involvement in Ca(2+)-mediated signaling networks.
    Keywords: Life Sciences (General)
    Type: The Journal of biological chemistry (ISSN 0021-9258); Volume 277; 12; 9840-52
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  • 5
    Publication Date: 2011-08-24
    Description: Calcium is essential for pollen germination and pollen tube growth. A large body of information has established a link between elevation of cytosolic Ca(2+) at the pollen tube tip and its growth. Since the action of Ca(2+) is primarily mediated by Ca(2+)-binding proteins such as calmodulin (CaM), identification of CaM-binding proteins in pollen should provide insights into the mechanisms by which Ca(2+) regulates pollen germination and tube growth. In this study, a CaM-binding protein from maize pollen (maize pollen calmodulin-binding protein, MPCBP) was isolated in a protein-protein interaction-based screening using (35)S-labeled CaM as a probe. MPCBP has a molecular mass of about 72 kDa and contains three tetratricopeptide repeats (TPR) suggesting that it is a member of the TPR family of proteins. MPCBP protein shares a high sequence identity with two hypothetical TPR-containing proteins from Arabidopsis. Using gel overlay assays and CaM-Sepharose binding, we show that the bacterially expressed MPCBP binds to bovine CaM and three CaM isoforms from Arabidopsis in a Ca(2+)-dependent manner. To map the CaM-binding domain several truncated versions of the MPCBP were expressed in bacteria and tested for their ability to bind CaM. Based on these studies, the CaM-binding domain was mapped to an 18-amino acid stretch between the first and second TPR regions. Gel and fluorescence shift assays performed with CaM and a CaM-binding synthetic peptide further confirmed MPCBP binding to CaM. Western, Northern, and reverse transcriptase-polymerase chain reaction analysis have shown that MPCBP expression is specific to pollen. MPCBP was detected in both soluble and microsomal proteins. Immunoblots showed the presence of MPCBP in mature and germinating pollen. Pollen-specific expression of MPCBP, its CaM-binding properties, and the presence of TPR motifs suggest a role for this protein in Ca(2+)-regulated events during pollen germination and growth.
    Keywords: Life Sciences (General)
    Type: The Journal of biological chemistry (ISSN 0021-9258); Volume 275; 45; 35457-70
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  • 6
    Publication Date: 2011-08-24
    Description: Calmodulin (CaM), a key calcium sensor in all eukaryotes, regulates diverse cellular processes by interacting with other proteins. To isolate CaM binding proteins involved in ethylene signal transduction, we screened an expression library prepared from ethylene-treated Arabidopsis seedlings with 35S-labeled CaM. A cDNA clone, EICBP (Ethylene-Induced CaM Binding Protein), encoding a protein that interacts with activated CaM was isolated in this screening. The CaM binding domain in EICBP was mapped to the C-terminus of the protein. These results indicate that calcium, through CaM, could regulate the activity of EICBP. The EICBP is expressed in different tissues and its expression in seedlings is induced by ethylene. The EICBP contains, in addition to a CaM binding domain, several features that are typical of transcription factors. These include a DNA-binding domain at the N terminus, an acidic region at the C terminus, and nuclear localization signals. In database searches a partial cDNA (CG-1) encoding a DNA-binding motif from parsley and an ethylene up-regulated partial cDNA from tomato (ER66) showed significant similarity to EICBP. In addition, five hypothetical proteins in the Arabidopsis genome also showed a very high sequence similarity with EICBP, indicating that there are several EICBP-related proteins in Arabidopsis. The structural features of EICBP are conserved in all EICBP-related proteins in Arabidopsis, suggesting that they may constitute a new family of DNA binding proteins and are likely to be involved in modulating gene expression in the presence of ethylene.
    Keywords: Life Sciences (General)
    Type: Biochemical and biophysical research communications (ISSN 0006-291X); Volume 279; 3; 762-9
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  • 7
    Publication Date: 2019-06-28
    Description: Computation of the flow field inside a space shuttle main engine (SSME) requires the application of state of the art computational fluid dynamic (CFD) technology. Several computer codes are under development to solve 3-D flow through the hot gas manifold. Some algorithms were designed to solve the unsteady compressible Navier-Stokes equations, either by implicit or explicit factorization methods, using several hundred or thousands of time steps to reach a steady state solution. A new iterative algorithm is being developed for the solution of the implicit finite element equations without assembling global matrices. It is an efficient iteration scheme based on a modified nonlinear Gauss-Seidel iteration with symmetric sweeps. The algorithm is analyzed for a model equation and is shown to be unconditionally stable. Results from a series of test problems are presented. The finite element code was tested for couette flow, which is flow under a pressure gradient between two parallel plates in relative motion. Another problem that was solved is viscous laminar flow over a flat plate. The general 3-D finite element code was used to compute the flow in an axisymmetric turnaround duct at low Mach numbers.
    Keywords: FLUID MECHANICS AND HEAT TRANSFER
    Type: NASA-CR-184175 , NAS 1.26:184175
    Format: application/pdf
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  • 8
    Publication Date: 2019-07-12
    Description: A finite element computational procedure has been developed to find linear and nonlinear (von Karman) first-ply failure loads of composite laminates subjected to in-plane and transverse loads. The FEM is based on first-order shear deformation theory and several phenomenological failure criteria. It is found that the failure loads predicted by various failure criteria differ from one another by a maximum of 35 percent in the case of linear loads and 50 percent in the case of nonlinear loads; the failure locations differ from each other in a random way. It is demonstrated that the difference between the linear and nonlinear failure loads is large in the case of transversely loaded simply supported laminates and thin plates. The difference is found to be quite small in the case of in-plane (tensile) loading and thick laminates.
    Keywords: STRUCTURAL MECHANICS
    Type: Composites Science and Technology (ISSN 0266-3538); 44; 3 19
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  • 9
    Publication Date: 2019-07-13
    Description: The space shuttle main engine (SSME) has extremely complex internal flow structure. The geometry of the flow domain is three-dimensional with complicated topology. The flow is compressible, viscous, and turbulent with large gradients in flow quantities and regions of recirculations. The analysis of the flow field in SSME involves several tedious steps. One is the geometrical modeling of the particular zone of the SSME being studied. Accessing the geometry definition, digitalizing it, and developing surface interpolations suitable for an interior grid generator require considerable amount of manual labor. There are several types of grid generators available with some general-purpose finite element programs. An efficient and robust computational scheme for solving 3D Navier-Stokes equations has to be implemented. Post processing software has to be adapted to visualize and analyze the computed 3D flow field. The progress made in a project to develop software for the analysis of the flow is discussed. The technical approach to the development of the finite element scheme and the relaxation procedure are discussed. The three dimensional finite element code for the compressible Navier-Stokes equations is listed.
    Keywords: FLUID MECHANICS AND HEAT TRANSFER
    Type: NASA-CR-179182 , NAS 1.26:179182
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  • 10
    Publication Date: 2019-07-13
    Description: A study was made of the gust response of an annular turbine cascade using a two-dimensional Navier Stokes code. The time-marching CFD code, NPARC, was used to calculate the unsteady forces due to the fluid flow. The computational results were compared with a previously published experimental data for the annular cascade reported in the literature. Reduced frequency, Mach number and angle of incidence were varied independently and the gust velocity was sinusoidal. For the high inlet velocity case, the cascade was nearly choked.
    Keywords: Aircraft Propulsion and Power
    Type: NASA/TM-2001-210562 , NAS 1.15:210562 , E-12520 , 46th International Gas Turbine and Aeroengine Technical Congress, Exposition, and Users Symposium; Jun 04, 2001 - Jun 06, 2001; New Orleans, LA; United States
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