ALBERT

Description: Laboratory experiments and Voskhod flight data on vision sharpness, efficiency, and perception during space flights

Description: NASAs Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASAs GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80OC after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities. Support from the NASA Space Life and Physical Sciences Division and the International Space Station Program is gratefully acknowledged.

Description: NASA's mission includes expanding our understanding of biological systems to improve life on Earth and to enable long-duration human exploration of space. The GeneLab Data System (GLDS) is NASAs premier open-access omics data platform for biological experiments. GLDS houses standards-compliant, high-throughput sequencing and other omics data from spaceflight-relevant experiments. The GeneLab project at NASA-Ames Research Center is developing the database, and also partnering with spaceflight projects through sharing or augmentation of experiment samples to expand omics analyses on precious spaceflight samples. The partnerships ensure that the maximum amount of data is garnered from spaceflight experiments and made publically available as rapidly as possible via the GLDS. GLDS Version 1.0, went online in April 2015. Software updates and new data releases occur at least quarterly. As of October 2016, the GLDS contains 80 datasets and has search and download capabilities. Version 2.0 is slated for release in September of 2017 and will have expanded, integrated search capabilities leveraging other public omics databases (NCBI GEO, PRIDE, MG-RAST). Future versions in this multi-phase project will provide a collaborative platform for omics data analysis. Data from experiments that explore the biological effects of the spaceflight environment on a wide variety of model organisms are housed in the GLDS including data from rodents, invertebrates, plants and microbes. Human datasets are currently limited to those with anonymized data (e.g., from cultured cell lines). GeneLab ensures prompt release and open access to high-throughput genomics, transcriptomics, proteomics, and metabolomics data from spaceflight and ground-based simulations of microgravity, radiation or other space environment factors. The data are meticulously curated to assure that accurate experimental and sample processing metadata are included with each data set. GLDS download volumes indicate strong interest of the scientific community in these data. To date GeneLab has partnered with multiple experiments including two plant (Arabidopsis thaliana) experiments, two mice experiments, and several microbe experiments. GeneLab optimized protocols in the rodent partnerships for maximum yield of RNA, DNA and protein from tissues harvested and preserved during the SpaceX-4 mission, as well as from tissues from mice that were frozen intact during spaceflight and later dissected on the ground. Analysis of GeneLab data will contribute fundamental knowledge of how the space environment affects biological systems, and as well as yield terrestrial benefits resulting from mitigation strategies to prevent effects observed during exposure to space environments.

Description: The purpose of this study is to assess the quality of spaceflight tissues stored in Ames Life Science Data Archive (ALSDA) freezers. Garnering information for downstream functional analysis such as generation of omics datasets from tissues is, in part, dependent on the state of sample preservation. To assess the viability of a select group of tissues, RNA integrity number (RIN) values were calculated for RNA extracted from rodent livers. Rat livers from Spacelab Life Sciences 1 (SLS-1) and mouse livers from Commercial Biomedical Test Module 3 (CBTM-3), Rodent Research 1 (RR1), and Rodent Research 3 (RR3) were tested. It was found that mean RIN values from CBTM3, RR1, and RR3 were suitable for downstream functional analysis (RIN greater than 5) while the mean RIN value for SLS-1 was not (RIN equal to 2.5 plus or minus 0.1). Information from this study could lay the foundation for future efforts in determining the types of assays that are most appropriate for different tissues in ALSDA freezers, which would maximize the scientific return on rare spaceflight samples.

Description: The portunoid fauna of Easter Island is reviewed, based on historical records and material collected by the Science Museum of Long Island Easter Island Expedition of 1998–1999. Previously, only two portunoid taxa identified to the species level were recorded from the island. This work reports on six species of portunoids: Ovalipes elongatus Stephenson & Rees, 1968 (new record), Laleonectes nipponensis (Sakai, 1938) (new record), Portunus pubescens (Dana, 1852), Thalamita auauensis Rathbun, 1906 (new record), T. bevisi (Stebbing, 1921) (new record), and T. seurati Nobili, 1906 (new record). Specimens tentatively referred to Thalamita minuscula Nobili, 1906, are also discussed, but this taxon may represent the juvenile form of T. seurati. The new records from the island all represent large range extensions for each species. Color notes are provided for four species. The first pleopod of the male of O. elongatus is illustrated for the first time, and the species' potential as an invasive taxon is discussed.

Description: Organic-rich carbonate sediments are deposited in a range of environments today and in the geologic past. A significant part of organic matter (OM) degradation in such sediments often occurs by microbial reduction of seawater sulfate, and the sulfide product may be preserved in pyrite and in organic sulfur (S) compounds. The isotopic composition (δ34S) of these phases can provide valuable information about S cycling in the ocean and in sediment porewaters, but only insofar as the processes governing these δ34S values are understood. To this end, we investigated the pathways, timing and interactions between pyrite and organic S formation during the deposition of organic-rich chalks. As a test case, we studied cores representing the thickest (∼350 m) and most complete Late Cretaceous organic-rich sequence along the southern Paleotethyan margin (central Israel). The organic S and OM contents show an inverse relation with the pyritic S content, which together with the uniform FePy/FeHR ratio (∼40%), suggest competition between organic S and pyrite formation. Both kerogen and pyritic S are 34S-depleted relative to Late Cretaceous marine sulfate (δ34S∼17–20‰), but the kerogen S is consistently and unusually 34S-enriched relative to coexisting pyrite by up to ∼38‰. Large S isotope fractionation (∼60‰) during microbial sulfate reduction necessary to reproduce the lowest pyrite δ34S values in the core, and relatively invariant δ34S values in organic S suggests that this large fractionation was approximately constant during deposition of the chalks in the core. Higher pyrite δ34S values observed in the most organic-rich parts of the core may be explained by Fe-limited pyrite formation, perhaps due to the reaction of Fe (e.g., complexation, sorption) with organic compounds. Lesser Fe availability, relative to the OM available for sulfate reduction, limits the ultimate abundance of pyrite, but importantly, it delays the formation of pyrite to deeper below the sediment-water interface, from 34S-enriched sulfide produced by Rayleigh distillation of a dwindling sulfate reservoir. Thus, it appears that competing Fe-OM, S-OM and Fe-S reactions can significantly affect the δ34S values recorded in pyrite in organic-rich carbonate sediments despite large and relatively constant microbial S isotope fractionation.