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  • 1
    Publication Date: 2021-11-30
    Description: Abstract
    Description: This dataset contains petrophysical, geochemical, and mineralogical data from a drilling core from the Coastal Cordillera, Chile. The drilling campaign in the semi-arid field site Reserve Santa Gracia was conducted in the framework of the “EarthShape” project (DFG SPP1803) to study deep weathering along a climate gradient. Previous studies in this area found that the weathering front is located much deeper than expected (Oeser et al., 2018). To explore the weathering profile and the depth of the weathering front, we performed various geochemical, petrophysical, and mineralogical analyses. The drilling campaign was conducted in March and April 2019, using the wireline drilling method with a standard industry truck-mounted PQ3-sized (85 mm core diameter, 123 mm hole diameter) rotary drilling rig (Sondajes Araos E.I.R.L.). A detailed description of the drilling activities is given in Krone et al. (2021). The retrieved core runs with a maximum length of 1.5 m were drilled using potable water, with added contamination control tracer for further microbiological analyses of the rock. As basis for our detailed study of deep weathering we determined the porosity, density, specific surface area, elemental composition, mineralogical composition, Fe oxidation, and the degree of weathering from chemical depletion, volumetric strain, and the weathering rate using the in situ cosmogenic nuclide beryllium-10 (10Be).
    Keywords: critical zone ; rock fracturing ; rock weathering ; compound material 〉 igneous material 〉 igneous rock ; compound material 〉 igneous material 〉 igneous rock 〉 phaneritic igneous rock 〉 granitoid ; compound material 〉 igneous material 〉 intermediate composition igneous material 〉 intermediate composition igneous rock 〉 dioritoid 〉 monzodioritic rock ; compound material 〉 igneous material 〉 intermediate composition igneous material 〉 intermediate composition igneous rock 〉 dioritoid 〉 monzodioritic rock 〉 quartz monzodiorite ; EARTH SCIENCE 〉 LAND SURFACE 〉 EROSION/SEDIMENTATION 〉 WEATHERING ; EARTH SCIENCE 〉 SOLID EARTH 〉 GEOCHEMISTRY 〉 GEOCHEMICAL PROCESSES 〉 CHEMICAL WEATHERING ; EARTH SCIENCE 〉 SOLID EARTH 〉 ROCKS/MINERALS/CRYSTALS 〉 IGNEOUS ROCKS ; EARTH SCIENCE 〉 SOLID EARTH 〉 ROCKS/MINERALS/CRYSTALS 〉 IGNEOUS ROCKS 〉 IGNEOUS ROCK PHYSICAL/OPTICAL PROPERTIES ; industrial process 〉 drilling ; land 〉 natural area 〉 terrestrial area 〉 arid land ; lithosphere 〉 earth's crust 〉 fault
    Type: Dataset , Dataset
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  • 2
    Publication Date: 2023-02-23
    Description: Abstract
    Description: In coastal Arctic permafrost regions, thermokarst lagoons represent the transition state from a freshwater lacustrine to a marine environment, and receive little attention regarding their role for greenhouse gas production and release. The geochemical features of a thermokarst lagoon were compared with two thermokarst lakes on the Bykovsky Peninsula in northeastern Siberia. This data set includes pH, major cations and anions, alkalinity, salinity, and dissolved iron (ferric and ferrous) concentrations from porewater of lake and lagoon sediments; the concentration and stable isotopic signature of CH4 in small plug samples from the sediment cores; total carbon (TC), total organic carbon (TOC), total nitrogen (TN), and total sulfur (TS) measured from the bulk sediment; and several biomarker indices (e.g. CPI, Paq) were calculated based on n-alkane concentrations to characterize the origin of organic matter (OM) in the lakes.
    Keywords: thermokarst lake ; themokast lagoon ; carbon turnover ; geochemistry ; EARTH SCIENCE 〉 LAND SURFACE 〉 FROZEN GROUND 〉 PERMAFROST
    Type: Dataset , Dataset
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  • 3
    Publication Date: 2023-06-30
    Description: Abstract
    Description: This data publication presents quantitative DNA data obtained through fluorometric detection of genomic DNA and the estimation of 16S rRNA gene copies using quantitative Polymerase Chain Reaction (qPCR). The data encompasses various soil and rock samples collected across a climate gradient. The DNA was extracted using a protocol enabling the separate analysis of intracellular DNA (iDNA) and extracellular DNA (eDNA) from the same sample. The primary objective of this study was to enhance a previously established method developed by Alawi et al. (2014) for analyzing terrestrial samples by introducing modifications to the extraction buffer. Phosphate buffers at two different concentrations (120 mM and 300 mM), EDTA (300 mM), and a high-concentration phosphate buffer in combination with EDTA (300 mM each) were tested in conjunction with a detergent mix (detailed in Medina et al., 2023; submitted). Thorough tests, including spiked DNA experiments and cell counts, were conducted on one low biomass sample to validate the extraction setups. The two most effective extraction protocols were then applied to all samples from the four designated sites and compared with the phosphate buffer described by Alawi et al. (2014), resulting in the calculation of improvement factors. The resulting dataset provides valuable quantitative DNA information and estimates of 16S rRNA gene copies across diverse soil and rock samples along a climate gradient. The modifications made to the extraction buffer demonstrated improved efficiency in extracting especially iDNA compared to the original method. These findings contribute to the refinement and optimization of DNA extraction protocols for terrestrial samples, enabling more accurate and comprehensive analyses of microbial communities in different environments.
    Description: Other
    Description: The DFG Priority Program 1803 "EarthShape - Earth Surface Shaping by Biota" (2016-2022; https://www.earthshape.net/) explored between scientific disciplines and includes geoscientists and biologists to study from different viewpoints the complex question how microorganisms, animals, and plants influence the shape and development of the Earth’s surface over time scales from the present-day to the young geologic past. All study sites are located in the north-to-south trending Coastal Cordillera mountains of Chile, South America. These sites span from the Atacama Desert in the north to the Araucaria forests approximately 1300 km to the south. The site selection contains a large ecological and climate gradient ranging from very dry to humid climate conditions.
    Keywords: EarthShape ; Chile ; Coastal Cordillera ; National Park Pan de Azúcar ; Private Reserve Santa Gracia ; National Park La Campana ; National Park Nahuelbuta ; biosphere 〉 anatomy 〉 tissue 〉 genetic information 〉 DNA ; biosphere 〉 anatomy 〉 tissue 〉 genetic information 〉 gene ; chemical 〉 biochemical substance 〉 nucleic acid ; EARTH SCIENCE 〉 BIOSPHERE
    Type: Dataset , Dataset
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  • 4
    Publication Date: 2023-06-29
    Description: Abstract
    Description: The effects of climate and topography on soil physico-chemical and microbial parameters were studied along an extensive latitudinal climate gradient in the Coastal Cordillera of Chile (26° - 38°S). The study sites encompass arid (Pan de Azúcar), semiarid (Santa Gracia), mediterranean (La Campana) and humid (Nahuelbuta) climates and vegetation, ranging from arid desert, dominated by biological soil crusts (biocrusts), semiarid shrubland and mediterranean sclerophyllous forest, where biocrusts are present but do have a seasonal pattern to temperate-mixed forest, where biocrusts only occur as an early pioneering development stage after disturbance. All soils originate from granitic parent materials and show very strong differences in pedogenesis intensity and soil depth.Most of the investigated physical, chemical and microbiological soil properties showed distinct trends along the climate gradient. Further, abrupt changes between the arid northernmost study site and the other semi-arid to humid sites can be shown, which indicate non-linearity and thresholds along the climate gradient. Clay and total organic carbon contents (TOC) as well as Ah horizons and solum depths increased from arid to humid climates, whereas bulk density (BD), pH values and base saturation (BS) decreased. These properties demonstrate the accumulation of organic matter, clay formation and element leaching as key-pedogenic processes with increasing humidity. However, the soils in the northern arid climate do not follow this overall latitudinal trend, because texture and BD are largely controlled by aeolian input of dust and sea salts spray followed by the formation of secondary evaporate minerals. Total soil DNA concentrations and TOC increased from arid to humid sites, while areal coverage by biocrusts exhibited an opposite trend. Relative bacterial and archaeal abundances were lower in the arid site, but for the other sites the local variability exceeds the variability along the climate gradient. Differences in soil properties between topographic positions were most pronounced at the study sites with the mediterranean and humid climate, whereas microbial abundances were independent on topography across all study sites. In general, the regional climate is the strongest controlling factor for pedogenesis and microbial parameters in soils developed from the same parent material. Topographic position along individual slopes of limited length augmented this effect only under humid conditions, where water erosion likely relocated particles and elements downward. The change from alkaline to neutral soil pH between the arid and the semi-arid site coincided with qualitative differences in soil formation as well as microbial habitats. This also reflects non-linear relationships of pedogenic and microbial processes in soils depending on climate with a sharp threshold between arid and semi-arid conditions. Therefore, the soils on the transition between arid and semi-arid conditions are especially sensitive and may be well used as indicators of long and medium-term climate changes. Concluding, the unique latitudinal precipitation gradient in the Coastal Cordillera of Chile is predestined to investigate the effects of the main soil forming factor – climate – on pedogenic processes.The data presented here is part of the German-Chilean Priority Program “EarthShape” (Earth Surface Shaping by Biota), funded by the German Research Foundation (DFG). We provide the basic background data, which includes investigations into the influence of climate, vegetation and topography on pedogenesis and microbial abundances. The data are supplementary material to Bernhard et al. (2018).All tables are available as one Excel file, as individual tables in .csv format in a zipped archive and as PDF file. The samples are assigned with International Geo Sample Numbers (IGSN) and linked to a comprehensive sample description in the internet.The content of the five data tables is:Table S1: Soil profile field description for the EarthShape study sitesTable S2: Soil physico-chemical properties for the depth increment samples in the four study sitesTable S3: Soil physico-chemical properties for the horizon samples in the four study sitesTable S4: Relative microbial abundances in the four study sitesTable S5: Plant species and abundance (% cover) in the four study sites
    Keywords: climate ; topography ; soil texture ; total organic carbon ; carbon isotope ratio (δ13 Corg) ; microbial abundance
    Language: English
    Type: Dataset , Dataset
    Format: 707740 Bytes
    Format: 4 Files
    Format: application/pdf
    Format: application/x-zip-compressed
    Format: application/x-zip-compressed
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
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  • 5
    Publication Date: 2024-03-07
    Description: Abstract
    Description: The Chilean Coastal Cordillera features a spectacular climate and vegetation gradient, ranging from arid and unvegetated areas in the north to humid and forested areas in the south. The DFG Priority Program "EarthShape" (Earth Surface Shaping by Biota) uses this natural gradient to investigate how climate and biological processes shape the Earth's surface. We explored the critical zone, the Earth's uppermost layer, in four key sites located in desert, semidesert, mediterranean, and temperate climate zones of the Coastal Cordillera, with the focus on weathering of granitic rock. Here, we present first results from four ~2m-deep regolith profiles to document: (1) architecture of weathering zone; (2) degree and rate of rock weathering, thus the release of mineral-derived nutrients to the terrestrial ecosystems; (3) denudation rates; and (4) microbial abundances of bacteria and archaea in the saprolite. From north to south, denudation rates from cosmogenic nuclides are ~10 t km-2 yr-1 at the arid Pan de Azúcar site, ~20 t km-2 yr-1 at the semi-arid site of Santa Gracia, ~60 t km-2 yr-1 at the mediterranean climate site of La Campana, and ~30 t km-2 yr-1 at the humid site of Nahuelbuta. A and B horizons increase in thickness and elemental depletion or enrichment increases from north (~26 °S) to south (~38 °S) in these horizons. Differences in the degree of chemical weathering, quantified by the chemical depletion fraction (CDF), are significant only between the arid and sparsely vegetated site and the other three sites. Differences in the CDF between the sites, and elemental depletion within the sites are sometimes smaller than the variations induced by the bedrock heterogeneity. Microbial abundances (bacteria and archaea) in saprolite substantially increase from the arid to the semi-arid sites. With this study, we provide a comprehensive dataset characterizing the Critical Zone geochemistry in the Chilean Coastal Cordillera. This dataset confirms climatic controls on weathering and denudation rates and provides prerequisites to quantify the role of biota in future studies. The data are supplementary material to Oeser et al. (2018). All samples are assigned with International Geo Sample Numbers (IGSN), a globally unique and persistent Identifier for physical samples. The IGSNs are provided in the data tables and link to a comprehensive sample description in the internet. The content of the eight data tables is: Table S1: Catena properties of the four primary EarthShape study areas. Table S2: Major and selected trace element concentration for bedrock samples. Table S3 Normative modal abundance of rock-forming minerals. Table S4: Major and selected trace element concentration for regolith samples and dithionite and oxalate soluble pedogenic oxides. Table S5: Weathering indices CDF and CIA, and the mass transfer coefficients (τ) for major and trace elements along with volumetric strain (ɛ). Table S6: Chemical weathering and physical erosion rates Table S7: Relative microbial abundances in saprolite of the four study areas. Table S8: Uncorrected major and trace element concentration. The data tables are provided as one Excel file with eight spreadsheets, as individual tables in .csv format in a zipped archive and as printable PDF versions in a zipped archive.
    Description: Other
    Description: The DFG Priority Program 1803 "EarthShape - Earth Surface Shaping by Biota" (2016-2022) bridges between scientific disciplines and includes geoscientists and biologists to study from different viewpoints the complex question how microorganisms, animals, and plants influence the shape and development of the Earth’s surface over time scales from the present-day to the distant geologic past. All study sites are located in the north-to-south trending Coastal Cordillera mountains of Chile, South America. These sites span from the Atacama Desert in the north to the Araucaria forests approximately 1300 km to the south. The site selection contains a large ecological and climate gradient ranging from very dry to humid climate conditions.
    Keywords: denudation ; microbial abundance ; Chile ; climate ; National Parc Pan de Azucar ; Private Reserve Santa Gracia ; National Parc La Campana ; National Parc Nahuelbuta ; Coastal Cordillera ; EARTH SCIENCE 〉 LAND SURFACE 〉 EROSION/SEDIMENTATION 〉 EROSION ; EARTH SCIENCE 〉 LAND SURFACE 〉 EROSION/SEDIMENTATION 〉 WEATHERING ; EARTH SCIENCE 〉 LAND SURFACE 〉 SOILS 〉 MICROFLORA ; EARTH SCIENCE 〉 LAND SURFACE 〉 SOILS 〉 SOIL CHEMISTRY
    Type: Dataset , Dataset
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  • 6
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    PANGAEA
    In:  Supplement to: Mitzscherling, Julia; Horn, Fabian; Winterfeld, Maria; Mahler, Linda; Kallmeyer, Jens; Overduin, Pier Paul; Schirrmeister, Lutz; Winkel, Matthias; Grigoriev, Mikhail N; Wagner, Dirk; Liebner, Susanne (2019): Microbial community composition and abundance after millennia of submarine permafrost warming. Biogeosciences, 16(19), 3941-3958, https://doi.org/10.5194/bg-16-3941-2019
    Publication Date: 2023-03-07
    Description: The mobilization of carbon in degrading permafrost is a long-term process and an important feedback upon climate change. Under submarine conditions substantial permafrost warming occurs millennia before permafrost thaws, potentially stimulating microbial communities. How microbial community composition and abundance responded to millennial-scale permafrost warming remains, however, unkown. We measured the in situ development of bacterial community composition and abundance together with temperature, salinity and pore water chemistry along an onshore-offshore transect on the Siberian Arctic Shelf. Samples derived from ice-bonded terrestrial permafrost comparable in age and sedimentation history that had been warming by more than 10 °C over the last 2500 years. Bacterial assemblages identified through amplicon sequencing correlated only weakly with temperature but strongly with pore water stable isotope signatures. They showed a significant spatial variation. Bacterial 16S rRNA gene copies quantified through qPCR negatively correlated with rising temperature, while both gene copies and total cell counts negatively correlated with increasing pore water salinity. Correlations of microbial community composition and abundance to stable isotope signatures and pore water salinity imply that they still mainly reflect the sedimentation history. On time-scales of centuries, permafrost warming coincided with decreasing microbial abundances, whereas millennia after inundation, microbial cell abundance was similar to onshore permafrost. We suggest that, as long as permafrost remains frozen the effect of warming alone on the permafrost-carbon-feedback is marginally even on time-scales of millennia because it has an overall low-level effect on microbial community composition and abundance.
    Keywords: AWI_PerDyn; Permafrost Research (Periglacial Dynamics) @ AWI
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 7
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    Unknown
    PANGAEA
    In:  Supplement to: Schneider, Julia; Grosse, Guido; Wagner, Dirk (2009): Land cover classification of tundra environments in the Arctic Lena Delta based on Landsat 7 ETM+ data and its application for upscaling of methane emissions. Remote Sensing of Environment, 113(2), 380-391, https://doi.org/10.1016/j.rse.2008.10.013
    Publication Date: 2023-05-12
    Description: The Lena River Delta, situated in Northern Siberia (72.0 - 73.8° N, 122.0 - 129.5° E), is the largest Arctic delta and covers 29,000 km**2. Since natural deltas are characterised by complex geomorphological patterns and various types of ecosystems, high spatial resolution information on the distribution and extent of the delta environments is necessary for a spatial assessment and accurate quantification of biogeochemical processes as drivers for the emission of greenhouse gases from tundra soils. In this study, the first land cover classification for the entire Lena Delta based on Landsat 7 Enhanced Thematic Mapper (ETM+) images was conducted and used for the quantification of methane emissions from the delta ecosystems on the regional scale. The applied supervised minimum distance classification was very effective with the few ancillary data that were available for training site selection. Nine land cover classes of aquatic and terrestrial ecosystems in the wetland dominated (72%) Lena Delta could be defined by this classification approach. The mean daily methane emission of the entire Lena Delta was calculated with 10.35 mg CH4/m**2/d. Taking our multi-scale approach into account we find that the methane source strength of certain tundra wetland types is lower than calculated previously on coarser scales.
    Keywords: File format; File size; LenaDelta; Lena Delta, Siberia, Russia; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 6 data points
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  • 8
    Publication Date: 2023-05-12
    Keywords: Bacteria, abundance in colony forming units; BlackValleyTransect; Carbon, total; Conductivity of soil/sediment; Cultured on modified BRII medium (Bund & Rovira 1955); Cultured on R2A medium (Reasoner & Geldreich 1985); Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; Distance; East Antarctica; Gene copies; LAND; Nitrogen, total; pH, soil; Sample ID; Sampling/measurement on land; Sand; Silt; Size fraction 〈 0.002 mm, clay; Standard deviation; Water content, wet mass
    Type: Dataset
    Format: text/tab-separated-values, 252 data points
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  • 9
    Publication Date: 2023-05-12
    Keywords: Bacteria, abundance in colony forming units; Carbon, total; Conductivity of soil/sediment; Cultured on modified BRII medium (Bund & Rovira 1955); Cultured on R2A medium (Reasoner & Geldreich 1985); Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; Distance; East Antarctica; Gene copies; GlacierTransect; LAND; Nitrogen, total; pH, soil; Sample ID; Sampling/measurement on land; Sand; Silt; Size fraction 〈 0.002 mm, clay; Standard deviation; Water content, wet mass
    Type: Dataset
    Format: text/tab-separated-values, 252 data points
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  • 10
    Publication Date: 2023-06-27
    Keywords: AWI_PerDyn; AWI Arctic Land Expedition; Barium 2+; Beckman Coulter Laser diffraction particle size analyzer LS 200; Bromide; Calcium; Cape Mamontov Klyk; Carbon, organic, dissolved; Carbon, organic, total; Carbon, total; Carbon and nitrogen and sulfur (CNS) isotope element analyzer, Elementar, Vario EL III; Chloride; COAST_C-1; COAST_I; Conductivity, electrolytic; Core; Depth, reference; DEPTH, sediment/rock; DRILL; Drilling/drill rig; Gravimetric estimate; ICP-OES, Perkin-Elmer, Optima 3000XL; interpolated; Ion chromatograph, Dionex Corporation, DX-320; Lithologic unit/sequence; Magnesium; Mass spectrometer Finnigan MAT Delta-S; Nitrate; Nitrogen, total; Permafrost Research (Periglacial Dynamics) @ AWI; pH; Potassium; RU-Land_2005_COAST; Salinity; Sample code/label; Sample ID; Silicon; Size fraction 〈 0.002 mm, clay; Size fraction 〉 0.063 mm, sand; Size fraction 0.063-0.002 mm, silt, mud; Sodium; Sulfate; Sulfur, total; Temperature, in rock/sediment; Thermistors and infrared sensors; Total organic carbon analyzer (TOC-VCPH); Water content, sediment; WTW MultiLab 540; δ18O, water; δ Deuterium, water
    Type: Dataset
    Format: text/tab-separated-values, 5637 data points
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