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  • evolution  (14)
  • Springer  (14)
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Journal of mammalian evolution 1 (1993), S. 227-254 
    ISSN: 1573-7055
    Keywords: enamel microstructure ; evolution ; incisors ; Mixodontia ; Rodentia
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Incisor enamel microstructure proved to be a very effective tool for assessment of phylogenetic relationships among the Rodentia. Pauciserial and multiserial Schmelzmuster are clearly distinct by structural characters such as orientation of interprismatic matrix, presence or absence of transition zones between Hunter-Schreger bands (HSB), inclination of HSB, enamel thickness, and others. Pauciserial HSB are structurally very close to the earliest known mammalian HSB found in Paleocene arctocyonids. Biomechanical arguments and outgroup comparison with mixodontians indicate that the pauciserial Schmelzmuster is a symplesiomorphy of the Rodentia. Transitional stages from pauciserial to multiserial Schmelzmuster were observed in middle Eocene ctenodactyloids and from pauciserial to uniserial in middle to late Eocene anomalurids. The multiserial Schmelzmuster is considered a synapomorphy of the Hystricognathi, ctenodactylids, and pedetids. Schmelzmuster evolution reflects the early dichotomy of the Rodentia: In the Asian ctenodactyloid lineage a multiserial Schmelzmuster evolved once and in the North American/European ischyromyoid lineage a uniserial Schmelzmuster developed several times convergently. The pauci- to uniserial Schmelzmuster of the anomalurids excludes a close relationship to the phiomyids, because the ctenodactyloid-phiomyid lineage is characterized by the development of a multiserial Schmelzmuster.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Journal of mammalian evolution 2 (1994), S. 117-131 
    ISSN: 1573-7055
    Keywords: enamel microstructure ; evolution ; Chaetomys ; incisors ; Caviomorpha
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract We have studied the incisor enamel microstructure ofChaetomys subspinosus and other possibly closely related caviomorph rodents.Chaetomys subspinosus lacks the important synapomorphy of the Octodontoidea, reactangular plate-like interprismatic matrix (IPM) in the portio interna (PI) of the incisor Schmelzmuster. Therefore its transfer from the Erethizontidae to the Echimyidae, as proposed by Patterson and Wood (Bull. Mus. Comp. Zool. 149, 371–543, 1982) based on retention of dP4, is contested. The parallel to acute angular IPM in the PI ofChaetomys and the Erethizontidae is a symplesiomorphy and does not indicate close relationship. Contrary to previous claims, a posterior carotid foramen is also retained inChaetomys. Chaetomys is characterized by an unusual thin enamel which is considered primitive after outgroup comparison. Therefore, it is proposed to leaveChaetomys in the monospecific erethizontid subfamily Chaetomyinae, until additional information on the species is available.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Neural processing letters 10 (1999), S. 181-193 
    ISSN: 1573-773X
    Keywords: evolution ; learning ; ontogeny ; neural development ; structure optimization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science
    Notes: Abstract The interaction between learning and evolution has elicited much interest particularly among researchers who use evolutionary algorithms for the optimization of neural structures. In this article, we will propose an extension of the existing models by including a developmental phase – a growth process – of the neural network. In this way, we are able to examine the dynamical interaction between genetic information and information learned during development. Several measures are proposed to quantitatively examine the benefits and the effects of such an overlap between learning and evolution. The proposed model, which is based on the recursive encoding method for structure optimization of neural networks, is applied to the problem domain of time series prediction. Furthermore, comments are made on problem domains which associate growing networks (size) during development with problems of increasing complexity.
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  • 4
    ISSN: 1573-5133
    Keywords: Cyprinidae ; piscivores ; prey fish ; small barbs ; species flock ; evolution ; speciation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The endemic cyprinid species flock in Lake Tana consists of 15 species of large hexaploid barbs, eight of which are piscivorous. Previously, it was assumed that all piscivores preyed on the same small barb species, Barbus trispilopleura. In this paper we present a description of morphology and ecology of a new abundant small barb species, Barbus tanapelagius sp. nova (holotype RMNH 33731) from Lake Tana, Ethiopia, which appears to be the major prey species for the large pelagic piscivorous barbs. B. tanapelagius differs clearly in morphology from the other 3 small, diploid Barbus species known from Lake Tana, B. trispilopleura Boulenger, 1902, B. humilis Boulenger, 1902 and B. pleurogramma Boulenger, 1902. Conspicuous differences are its elongated body, large eye diameter, prominent and hooked lower jaw contour and colouration. Preliminary data suggest that B. tanapelagius also differs ecologically from the other small Barbus spp. by its pelagic, strictly zooplanktivorous feeding and its occurrence mainly in the deeper, offshore waters. The other small Barbus species are most probably largely benthic feeders and dominant in the shallow inshore waters. Previous views about the evolution of the present 8 endemic piscivorous large barb species therefore require reconsideration, as the present paper shows a more complex scenario including several prey species.
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  • 5
    ISSN: 1572-9699
    Keywords: β-lactam antibiotics ; biosynthetic genes ; clusters ; evolution ; chromosome resolution ; genome plasticity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The genes pcbAB, pcbC and penDE encoding enzymes that catalyze the three steps of the penicillin biosynthesis have been cloned from Penicillium chrysogenum and Aspergillus nidulans. They are located in a cluster in Penicillium chrysogenum, Penicillium notatum, Aspergillus nidulans and Penicillium nalgiovense. The three genes are clustered in chromosome I (10.4 Mb) of P. chrysogenum, in chromosome II of P. notatum (9.6 Mb) and in chromosome VI (3.0 Mb) of A. nidulans. The cluster of the penicillin biosynthetic genes is amplified in strains with high level of antibiotic production. About five to six copies of the cluster are present in the AS-P-78 strain and 11 to 14 copies in the E1 strain (an industrial isolate), whereas only one copy is present in the wild type (NRRL 1951) strain and in the low producer Wis 54-1255 strain. The amplified region in strains AS-P-78 and E1 is arranged in tandem repeats of 106.5 or 57.6-kb units, respectively. In Acremonium chrysogenum the genes involved in cephalosporin biosynthesis are separated in at least two clusters. The pcbAB and pcbC genes are linked in the so-called ‘early cluster’ of genes involved in the cephalosporin biosynthesis. The ‘late cluster’, which includes the cefEF and cefG genes, is involved in the last steps of cephalosporin biosynthesis. The ‘early cluster’ was located in chromosome VII (4.6 Mb) in the C10 strain and the ‘late cluster’ in chromosome I (2.2 Mb). Both clusters are present in a single copy in the A. chrysogenum genome, in the wild-type and in the high cephalosporin-producing C10 strains.
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  • 6
    ISSN: 1573-5028
    Keywords: algae ; endosymbiosis ; evolution ; plastidial DNA ; Rubisco operon
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The rbcS gene coding for the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) of the brown alga Pylaiella littoralis is located within the plastid genome and is transcribed as a single polycistronic mRNA with the gene for the large subunit of Rubisco, rbcL. The structure of the Rubisco operon from P. littoralis was determined. Molecular phylogenies for rbcS and rbcL with a wide range of prokaryotes and eukaryotes were constructed which are congruent with recent evidence for polyphyletic plastid origins. Both rbcL and rbcS of the β-purple bacterium Alcaligenes eutrophus clearly cluster with the rhodophyte and chromophyte proteins. The data suggest that the Rubisco operons of red algal and chromophytic plastids derive from β-purple eubacterial antecedents, rather than the cyanobacterial lineage of eubacteria from which other of their genes derive. This implies a lateral transfer of Rubisco genes from β-purple eubacterial ancestors to the cyanobacterial ancestor of rhodophyte and chromophyte plastids.
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  • 7
    ISSN: 1573-5028
    Keywords: carbon fixation ; oxidative pentose phosphate pathway ; chloroplasts ; evolution ; endosymbiosis ; isoenzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Exploiting the differential expression of genes for Calvin cycle enzymes in bundle-sheath and mesophyll cells of the C4 plant Sorghum bicolor L., we isolated via subtractive hybridization a molecular probe for the Calvin cycle enzyme d-ribulose-5-phosphate 3-epimerase (R5P3E) (EC 5.1.3.1), with the help of which several full-size cDNAs were isolated from spinach. Functional identity of the encoded mature subunit was shown by R5P3E activity found in affinity-purified glutatione S-transferase fusions expressed in Escherichia coli and by three-fold increase of R5P3E activity upon induction of E. coli overexpressing the spinach subunit under the control of the bacteriophage T7 promoter, demonstrating that we have cloned the first functional ribulose-5-phosphate 3-epimerase from any eukaryotic source. The chloroplast enzyme from spinach shares about 50% amino acid identity with its homologues from the Calvin cycle operons of the autotrophic purple bacteria Alcaligenes eutrophus and Rhodospirillum rubrum. A R5P3E-related eubacterial gene family was identified which arose through ancient duplications in prokaryotic chromosomes, three R5P3E-related genes of yet unknown function have persisted to the present within the E. coli genome. A gene phylogeny reveals that spinach R5P3E is more similar to eubacterial homologues than to the yeast sequence, suggesting a eubacterial origin for this plant nuclear gene.
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  • 8
    ISSN: 1573-5028
    Keywords: Calvin cycle ; sedoheptulose-1,7-bisphosphatase ; isoenzymes ; endosymbiosis ; evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Full-size cDNAs encoding the precursors of chloroplast fructose-1,6-bisphosphatase (FBP), sedoheptulose-1,7-bisphosphatase (SBP), and the small subunit of Rubisco (RbcS) from spinach were cloned. These cDNAs complete the set of homologous probes for all nuclear-encoded enzymes of the Calvin cycle from spinach (Spinacia oleracea L.). FBP enzymes not only of higher plants but also of non-photosynthetic eukaryotes are found to be unexpectedly similar to eubacterial homologues, suggesting a eubacterial origin of these eukaryotic nuclear genes. Chloroplast and cytosolic FBP isoenzymes of higher plants arose through a gene duplication event which occurred early in eukaryotic evolution. Both FBP and SBP of higher plant chloroplasts have acquired substrate specificity, i.e. have undergone functional specialization since their divergence from bifunctional FBP/SBP enzymes of free-living eubacteria.
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  • 9
    ISSN: 1573-5028
    Keywords: carbon fixation ; chloroplasts ; evolution ; isoenzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A cDNA encoding the Calvin cycle enzyme transketolase (TKL; EC 2.2.1.1) was isolated from Sorghum bicolor via subtractive differential hybridization, and used to isolate several full-length cDNA clones for this enzyme from spinach. Functional identity of the encoded mature subunit was shown by an 8.6-fold increase of TKL activity upon induction of Escherichia coli cells that overexpress the spinach TKL subunit under the control of the bacteriophage T7 promoter. Chloroplast localization of the cloned enzyme is shown by processing of the in vitro synthesized precursor upon uptake by isolated chloroplasts. Southern blot-analysis suggests that TKL is encoded by a single gene in the spinach genome. TKL proteins of both higher-plant chloroplasts and the cytosol of non-photosynthetic eukaryotes are found to be unexpectedly similar to eubacterial homologues, suggesting a possible eubacterial origin of these nuclear genes. Chloroplast TKL is the last of the demonstrably chloroplast-localized Calvin cycle enzymes to have been cloned and thus completes the isolation of gene probes for all enzymes of the pathway in higher plants.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Hydrobiologia 316 (1995), S. 1-32 
    ISSN: 1573-5117
    Keywords: Africa ; autapomorphic characters ; convergence ; evolution ; freshwaters snails ; Lanistes ; Mollusca ; palaeolimnology ; palaeontology ; Pila ; predator/prey coevolution ; riftlakes ; taxonomy ; punctuated equilibrium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The Albertine Rift Valley (Uganda-Zaire) contains vast sedimentary sequences of late Cenozoic age. They were deposited in an extensive riftlake, Lake Obweruka, which existed from c. 8 Ma to 2.5 Ma and was comparable in size and depth to the present L. Tanganyika. Many freshwater molluscs that occur in these lacustrine deposits are characterised by their aberrant shell morphology, their extreme ornamentation and general form, making them resemble marine species. This convergence, rare in freshwater molluscs, is called thalassoidism and extreme ornamentation in marine as well as in freshwater molluscs is considered to be the result of a gradual process of prey/predator coevolution. In the present paper the Albertine representants of the ampullariid genera Lanistes and Pila, most of which are new to science, are taxonomically described and their phylogenetic relation, based upon apomorphic characters, is given. In addition the evolutionary history of these freshwater snails in the basin has been reconstructed. In the pre-riftlake environment 3 species of Lanistes occurred, with no special shell adaptations against predation. After the formation of a riftlake, 2 of these, colonising the new lacustrine ecospace, changed morphologically and radiated. The 3 derived lines show minor adaptations against predation. After the extinction of the dominant Lanistes species group around 6 Ma, the sole surviving lacustrine Lanistes suddenly radiates, the ancestral line persisting next to the 3 new daughter lines. This second morphological shift is spectacular as it produces shells with distinct thalassoid features. All the Lanistes species of L. Obweruka became extinct during a cataclysmic event around 4.5 Ma. Populations of the genus Pila colonised lacustrine habitats after this event, the derived form also showing striking thalassoid characters. There is no doubt that the intense morphological change occurred during a brief period, geologically speaking. The degree of morphological change in molluscs appears hence not to be linked with time. After the sudden radiation all lineages remain morphologically stable until they became extinct c. 1 Ma later. This pattern corresponds to the punctuated equilibrium model. Other groups (viviparids, thiarids) show more gradual changes.
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