ALBERT

Description: An inexpensive, laboratory-based, strain gauge valve gape monitor (SGM) was developed to monitor the valve gape behavior of bivalve molluscs in response to diel-cycling hypoxia. A Wheatstone bridge was connected to strain gauges that were attached to the shells of oysters (Crassostrea virginica). The recorded signals allowed for the opening and closing of the bivalves to be recorded continuously over two-day periods of experimentally-induced diel-cycling hypoxia and diel-cycling changes in pH. Here, we describe a protocol for developing an inexpensive strain gauge monitor and describe, in an example laboratory experiment, how we used it to measure the valve gape behavior of Eastern oysters (C. virginica), in response to diel-cycling hypoxia and cyclical changes in pH. Valve gape was measured on oysters subjected to cyclical severe hypoxic (0.6 mg/L) dissolved oxygen conditions with and without cyclical changes in pH, cyclical mild hypoxic (1.7 mg/L) conditions and normoxic (7.3 mg/L) conditions. We demonstrate that when oysters encounter repeated diel cycles, they rapidly close their shells in response to severe hypoxia and close with a time lag to mild hypoxia. When normoxia is restored, they rapidly open again. Oysters did not respond to cyclical pH conditions superimposed on diel cycling severe hypoxia. At reduced oxygen conditions, more than one third of the oysters closed simultaneously. We demonstrate that oysters respond to diel-cycling hypoxia, which must be considered when assessing the behavior of bivalves to dissolved oxygen. The valve SGM can be used to assess responses of bivalve molluscs to changes in dissolved oxygen or contaminants. Sealing techniques to better seal the valve gape strain gauges from sea water need further improvement to increase the longevity of the sensors.

Description: This chapter is concerned with two types of radiometric measurements essential to verify atmospheric correction algorithms and to calibrate vicariously satellite ocean color sensors. The first type is a photometric measurement of the direct solar beam to determine the optical thickness of the atmosphere. The intensity of the solar beam can be measured directly, or obtained indirectly from measurements of diffuse global upper hemispheric irradiance. The second type is a measurement of the solar aureole and sky radiance distribution using a CCD camera, or a scanning radiometer viewing in and perpendicular to the solar principal plane. From the two types of measurements, the optical properties of aerosols, highly variable in space and time, can be derived. Because of the high variability, the aerosol properties should be known at the time of satellite overpass. Atmospheric optics measurements, however, are not easy to perform at sea, from a ship or any platform. This complicates the measurement protocols and data analysis. Some instrumentation cannot be deployed at sea, and is limited to island and coastal sites. In the following, measurement protocols are described for radiometers commonly used to measure direct atmospheric transmittance and sky radiance, namely standard sun photometers, fast-rotating shadow-band radiometers, automated sky scanning systems, and CCD cameras. Methods and procedures to analyze and quality control the data are discussed, as well as proper measurement strategies for evaluation of atmospheric correction algorithms and satellite-derived ocean color.

Description: We present results from a non-linear, 3D, time dependent numerical spectral model (NSM) which extends from the ground up into the thermosphere and incorporates Hines' Doppler Spread Parameterization for small-scale gravity waves (GW). Our focal point is the mesosphere where wave interactions are playing a dominant role. We discuss planetary waves in the present paper and diurnal and semi-diurnal tides in the companion paper. Without external time dependent energy or momentum sources, planetary waves (PWs) are generated in the model for zonal wavenumbers 1 to 4, which have amplitudes in the mesosphere above 50 km as large as 30 m/s and periods between 2 and 50 days. The waves are generated primarily during solstice conditions, which indicates that the baroclinic instability (associated with the GW driven reversal in the latitudinal temperature gradient) is playing an important role. Results from a numerical experiment show that GWs are also involved directly in generating the PWs. For the zonal wavenumber m = 1, the predominant wave periods in summer are around 4 days and in winter between 6 and 10 days. For m = 2, the periods are in summer and close to 2.5 and 3.5 days respectively For m = 3, 4 the predominant wave periods are in both seasons close to two days. The latter waves have the characteristics of Rossby gravity waves with meridional winds at equatorial latitudes. A common feature of the PWs (m = 1 to 4) generated in summer and winter is that their vertical wavelengths throughout the mesosphere are large which indicates that the waves are not propagating freely but are generated throughout the region. Another common feature is that the PWs propagate preferentially westward in summer and eastward in winter, being launched from the westward and eastward zonal winds that prevail respectively in summer and winter altitudes below 80 km. During spring and fall, for m = 1 and 2 eastward propagating long period PWs are generated that are launched from the smaller eastward zonal winds that prevail in these seasons. PWs generated in the model produce large amplitude modulations of the diurnal tides at altitudes above 80 km and contribute to their seasonal variations.

Description: We present results from a nonlinear, 3D, time dependent numerical spectral model (NSM), which extends from the ground up into the thermosphere and incorporates Hines' Doppler Spread Parameterization for small-scale gravity waves (GW). Our focal point is the mesosphere that is dominated by wave interactions. We discuss diurnal and semi-diurnal tides ill the present paper (Part 1) and planetary waves in the companion paper (Part 2). To provide an understanding of the seasonal variations of tides, in particular with regard to gravity wave processes, numerical experiments are performed that lead to the following conclusions: 1. The large semiannual variations in tile diurnal tide (DT), with peak amplitudes observed around equinox, are produced primarily by GW interactions that involve, in part, planetary waves. 2. The DT, like planetary waves, tends to be amplified by GW momentum deposition, which reduces also the vertical wavelength. 3.Variations in eddy viscosity associated with GW interactions tend to peak in late spring and early fall and call also influence the DT. 4. The semidiurnal semidiurnal tide (SDT), and its phase in particular, is strongly influenced by the mean zonal circulation. 5. The SDT, individually, is amplified by GW's. But the DT filters out GW's such that the wave interaction effectively reduces the amplitude of the SDT, effectively producing a strong nonlinear interaction between the DT and SDT. 6.) Planetary waves generated internally by baroclinic instability and GW interaction produce large amplitude modulations of the DT and SDT.

Description: Quasi-decadal oscillations (QDO) have been observed in the stratosphere and have been linked to the equatorial Quasi-Biennial Oscillation (QBO) and to the 11-year solar activity cycle. With the use of a 2D version of our Numerical Spectral Model (NSM) that incorporates Hines' Doppler Spread Parameterization (DSP) for gravity waves (GW), we demonstrate that beat periods between 9 and 11 years can be generated by the QBO as it interacts through GW filtering with the Annual Oscillation (AO) and Semi-annual Oscillation (SAO). Results are discussed from computations covering up to 50 years, and our analyses leads to the following conclusions. The QDO as a stand-alone signature is largely confined to the upper mesosphere. Its largest signature appears in the form of amplitude modulations of the QBO, AO and SAO, and these extend into the lower stratosphere. The downward control that characterizes the QBO apparently comes into play, and the longer time constants for diffusion and radiative loss at lower altitudes facilitate the QDO response. Although excited by the QBO, which is confined to low latitudes, the QDO is shown to extend to high latitudes. The effect is particularly large for the QBO with period around 33.5 month (near the upper limit of observations), which interacts with the SAO to produce a hemispherically symmetric QDO. Our analysis indicates that the QDO is transferred to high latitudes by the meridional circulation, which prominently exhibits this periodicity particularly in the amplitude modulation of the AO.

Description: Solar cycle activity effects (SCAE) in the lower and middle atmosphere, reported in several studies, are difficult to explain on the basis of the small changes in solar radiation that accompany the 11-year cycle, It is therefore natural to speculate that dynamical processes may come into play to produce a leverage. Such a leverage may be provided by the Quasi-Biennial Oscillation (QBO) in the zonal circulation of the stratosphere, which has been linked to solar activity variations. Driven primarily by wave mean flow interaction, the QBO period and its amplitude are variable but are also strongly influenced by the seasonal cycle in the solar radiation. This influence extends to low altitudes referred to as "downward control". Relatively small changes in solar radiative forcing can produce small changes in the period and phase of the QBO, but this in turn can produce measurable differences in the wind field. Thus, the QBO may be an amplifier of solar activity variations and a natural conduit of these variations to lower altitudes. To test this hypothesis, we conducted experiments with a 2D (two-dimensional) version of our Numerical Spectral Model that incorporates Hines' Doppler Spread Parameterization for small-scale gravity waves (GW). Solar cycle radiance variations (SCRV) are accounted for by changing the radiative heating rate on a logarithmic scale from 0.1 % at the surface to 1 % at 50 km to 10% at 100 km. With and without SCRV, but with the same GW flux, we then conduct numerical experiments to evaluate the magnitude of the SCAE in the zonal circulation. The numerical results indicate that, under certain conditions, the SCAE is significant and can extend to lower altitudes where the SCRV is inconsequential. At 20-km the differences in the modeled wind velocities are as large as 5 m/s. For a modeled QBO period of 30 months, we find that the seasonal cycle in the solar forcing (through the Semi-annual Oscillation (SAO)) acts as a strong pacemaker to lockup the phase and period of the QBO. The SCAE then shows up primarily as a distinct but relatively weak amplitude modulation. But with the QBO period between 30 and 34 (or less than 30, presumably) months, the seasonal phase lock is weak. Solar flux radiance variations in the seasonal cycle then cause variations in the QBO period and phase that amplify the SCAE to produce relatively large variations in the wind field. These variations also extend to mid latitudes.

Description: We present an extension for the 2D (zonal mean) version of our Numerical Spectral Mode (NSM) that incorporates Hines' Doppler spread parameterization (DSP) for small scale gravity waves (GW). This model is applied to describe the seasonal variations and the semi-annual and quasi-biennial oscillations (SAO and QBO). Our earlier model reproduced the salient features of the mean zonal circulation in the middle atmosphere, including the QBO extension into the upper mesosphere inferred from UARS measurements. In the present model we incorporate also tropospheric heating to reproduce the upwelling at equatorial latitudes associated with the Brewer-Dobson circulation that affects significantly the dynamics of the stratosphere as Dunkerton had pointed out. Upward vertical winds increase the period of the QBO observed from the ground. To compensate for that, one needs to increase the eddy diffusivity and the GW momentum flux, bringing the latter closer to values recommended in the DSP. The QBO period in the model is 30 months (mo), which is conducive to synchronize this oscillation with the seasonal cycle of solar forcing. Multi-year interannual oscillations are generated through wave filtering by the solar driven annual oscillation in the zonal circulation. Quadratic non-linearities generate interseasonal variations to produce a complicated pattern of variability associated with the QBO. The computed temperature amplitudes for the SAO and QBO are in substantial agreement with observations at equatorial and extratropical latitudes. At high latitudes, however, the observed QBO amplitudes are significantly larger, which may be a signature of propagating planetary waves not included in the present model. The assumption of hydrostatic equilibrium not being imposed, we find that the effects from the vertical Coriolis force associated with the equatorial oscillations are large for the vertical winds and significant for the temperature variations even outside the tropics but are relatively small for the zonal winds.

Description: We report further results on the magnetic origins of coronal heating found from registering coronal images with photospheric vector magnetograms. For two complementary active regions, we use computed potential field lines to examine the global non-potentiality of bright extended coronal loops and the three-dimensional structure of the magnetic field at their feet, and assess the role of these magnetic conditions in the strong coronal heating in these loops. The two active regions are complementary, in that one is globally potential and the other is globally nonpotential, while each is predominantly bipolar, and each has an island of included polarity in its trailing polarity domain. We find the following: (1) The brightest main-arch loops of the globally potential active region are brighter than the brightest main- arch loops of the globally strongly nonpotential active region. (2) In each active region, only a few of the mainarch magnetic loops are strongly heated, and these are all rooted near the island. (3) The end of each main-arch bright loop apparently bifurcates above the island, so that it embraces the island and the magnetic null above the island. (4) At any one time, there are other main-arch magnetic loops that embrace the island in the same manner as do the bright loops but that are not selected for strong coronal heating. (5) There is continual microflaring in sheared core fields around the island, but the main-arch bright loops show little response to these microflares. From these observational and modeling results we draw the following conclusions: (1) The heating of the main-arch bright loops arises mainly from conditions at the island end of these loops and not from their global non-potentiality. (2) There is, at most, only a loose coupling between the coronal heating in the bright loops of the main arch and the coronal heating in the sheared core fields at their feet, although in both the heating is driven by conditions/events in and around the island. (3) The main-arch bright loops are likely to be heated via reconnection driven at the magnetic null over the island. The details of how and where (along the null line) the reconnection is driven determine which of the split-end loops are selected for strong heating. (4) The null does not appear to be directly involved in the heating of the sheared core fields or in the heating of an extended loop rooted in the island. Rather, these all appear to be heated by microflares in the sheared core field.

Description: We examine the magnetic origins of coronal heating in quiet regions by combining SOHO/EIT Fe xii coronal images and Kitt Peak magnetograms. Spatial filtering of the coronal images shows a network of enhanced structures on the scale of the magnetic network in quiet regions. Superposition of the filtered coronal images on maps of the magnetic network extracted from the magnetograms shows that the coronal network does indeed trace and stem from the magnetic network. Network coronal bright points, the brightest features in the network lanes, are found to have a highly significant coincidence with polarity dividing lines (neutral lines) in the network and are often at the feet of enhanced coronal structures that stem from the network and reach out over the cell interiors. These results indicate that, similar to the close linkage of neutral-line core fields with coronal heating in active regions (shown in previous work), low-lying core fields encasing neutral lines in the magnetic network often drive noticeable coronal heating both within themselves (the network coronal bright points) and on more extended field lines rooted around them. This behavior favors the possibility that active core fields in the network are the main drivers of the heating of the bulk of the quiet corona, on scales much larger than the network lanes and cells.

Description: We demonstrated that, in our model, non-linear interactions between planetary waves (PW) and migrating tides could generate in the upper mesosphere non-migrating tides with amplitudes comparable to those observed. The Numerical Spectral Model (NSM) we employ incorporates Hines Doppler Spread Parameterization for small-scale gravity waves (GW), which affect in numerous ways the dynamics of the mesosphere. The latitudinal (seasonal) reversals in the temperature and zonal circulation, which are largely caused by GWs (Lindzen, 198l), filter the PWs and contribute to the instabilities that generate the PWs. The PWs in turn are amplified by the momentum deposition of upward propagating GWs, as are the migrating tides. The GWs thus affect significantly the migrating tides and PWs, the building blocks of non-migrating tides. In the present paper, we demonstrate that GW filtering also contributes to the non-linear coupling between PWs and tides. Two computer experiments are presented to make this point. In one, we simply turn off the GW source to show the effect. In the second case, we demonstrate the effect by selectively suppressing the momentum source for the m = 0 non-migrating tides.