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  • 1
    ISSN: 0022-3832
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The authors have developed a statistical model for a branched polymer built from a monomeric unit (such as glucose) which has two types of reactive groups (aldehydic and alcoholic). The treatment differs from that of Flory's in that the different B groups in the A-R-Bf-1 monomer have differing reactivities instead of equal reactivities. The mole fraction of a particular x-mer having b1, b2,…bf-1 linkages at their respective B1, B2,…Bf-1 functional groups is: \documentclass{article}\pagestyle{empty}\begin{document}$N_{b1,b2,...b_{{\rm f} - 1}} = \frac{1}{x}\prod\limits_{i = 1}^{{\rm f} - 1} {\left({\begin{array}{*{20}c} x \\ {b_i} \\ \end{array}} \right)} p_i^{b_i} (1 - p_i)^{x - b_i}$\end{document} where \documentclass{article}\pagestyle{empty}\begin{document}$ x = 1 + \sum\limits_{i = 1}^{f - 1} {b_i}$\end{document} is the total number of monomer units per molecule and p1,p2,…pf-1 are the probabilities that any monomer unit is linked at the B1, B2,…Bf-1 functional group. From the above, x̄n, the number-average DP, x̄w, the weight-average DP, x̄z, the Z-average DP, and wx, the weight fraction of an x-mer, have been obtained. It is shown that the limit of x̄z/x̄w is 3 and the limit of x̄w/x̄n is infinity as the degree of polymerization increases for all cases where “f” is greater than two. These results were used for the randomly branched polymers, amylopectin and glycogen, where the functionality of the monomer in both cases is three. p4 and p6 were used to represent the probabilities that any glucose unit is linked at the 4 or 6 position. Using values of p6 = 0.05 and p4 = 0.94933, x̄n = 1500, M̄n = 243,000, M̄w=35,100,000, and M̄z = 104,500,000, giving M̄w/M̄n = 140 and M̄z/M̄w = 2.99. Literature values for molecular weights of amylopectin and glycogen are compared with the above statistical model and with less random statistical models.
    Additional Material: 4 Ill.
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  • 2
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 25 (1986), S. 1461-1491 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: New adenine (A) and uracil (U) π → π* transition-moment parameters have been derived from a recently developed semiempirical procedure. Using conformational energy probabilities based on the Boltzmann equation, the new parameters were assigned by optimizing the calculated CD of cyclic nucleotides against measured CD. The derived A-and U-parameters (along with guanine and cytosine parameters derived previously by the same procedure) have been assessed in CD spectral calculations of some polyribonucleic acid sequences, in assumed A-class geometries. Comparisons have been made between CD spectra calculated from the newly derived parameters and those calculated from parameters obtained from a combination of crystal optical measurements and quantum-mechanical calculations. Although some spectral differences do occur, for the RNA sequences considered, no major disagreements were found in CD spectral signs and shapes, between measurements and calculations. Overall, the results indicate that the newly derived A-, U-, G-, and C-parameters show better agreement between theory and experiment than those used in previous nucleic acid CD calculations.
    Additional Material: 14 Ill.
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  • 3
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An approximate semiempirical procedure has been developed in order to derive nucleic acid monomer π → π* electronic transition moment parameters. Using the approximate procedure, guanine (G) and cytosine (C) transition moment parameters have been derived from agreement found between calculated weight-averaged and measured CD spectra of cyclic-GMP and cyclic-CMP. The derived base transition moment parameters have been assessed in CD spectral calculations on some G- and C-containing nucleic acids for which reasonably good structural information exists. An attempt was also made at evaluating the likely CD spectral contributions of G and C electric n → π* transition moments whose magnitudes were taken to be the maximum expected. Overall, the results indicate that the derived G and C π → π* transition moment parameters are more successful in nucleic acid CD spectral calculations than those used in previous DeVoe theory CD calculations. In addition, the results indicate that electric n → π* transitions may be of importance in understanding nucleic acid monomer CD spectra but appear to be relatively unimportant in understanding nucleic acid polymer CD spectra. It is concluded that the derived G and C π → π* parameters are more useful in DeVoe theory CD calculations than parameters used previously.
    Additional Material: 16 Ill.
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  • 5
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Nägeli-type amylodextrins were prepared from various starch types: native starch granules from potato, waxy maize, wrinkled pea, and high-amylose maize, and from a commercial amylose (“Superlose”). The granular starches and retrograded amylose were treated with 15% sulfuric acid at 22°-25° for 3 months, the undissolved residues were washed free of acid and air dried. X-ray diffraction patterns showed that amylodextrin from waxy maize starch (A-type) and potato starch (B-type) retain the same diffraction type as that of the parent starch. On conversion of a starch to an amylodextrin, the sharpness and intensity of the diffraction patterns are either retained (waxy maize starch), improved (slightly with potato, significantly with high-amylose maize, and very markedly with wrinkled pea) or developed (amylose). The results indicate that the crystalline regions of a native starch granule, retrograded amylose, or amylodextrin are exceedingly resistant to acidic hydrolysis at room temperature. In contrast to the parent starches, native amylodextrins stain little if at all with dilute iodine solution. The iodine stains of dissolved amylodextrins were red (waxy maize), red-purple (potato), or purple (amylose, high-amylose maize, and wrinkled pea).
    Additional Material: 5 Ill.
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  • 6
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Although native B-type starch loses its sharp X-ray pattern on strong drying, the wet Nägeli amylodextrin prepared from such starch gives a sharp B-pattern, that is only slightly reduced in sharpness by complete drying. Nägeli amylodextrin dried admixed with a noncrystalline “filler” (e.g., starch sirup) gives an X-ray pattern essentially identical to that of the wet amylodextrin, except that the 16-Å (No. 1) ring is greatly reduced in sharpness and intensity. Failure of the B-structure to collapse during drying indicates that water is not intercalated between turns of a helix or otherwise required to maintain the geometry and packing arrangement of the starch molecular chains. Rather, for native starch granules or amylose fibers, water relieves intercrystallite strains and consequent crystallite distortion induced by strong drying. For Nägeli amylodextrin, the small molecules of starch sirup can penetrate the interstices between crystallites and prevent strain build-up during drying. For native starch granules, the interstitial regions are gel-like in character and less permeable to starch sirup molecules. A model for B-starch is proposed, that employs intertwined (double) helices.
    Additional Material: 13 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 12 (1973), S. 201-221 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Theoretical calculations of the circular dichroism of double-helical DNA and RNA by the method of Johnson and Tinoco were performed in order to investigate the origins of the optical activity spectral differences between these polynucleotides. Calculations were performed using transition moment directions arising from molecular orbital calculations as well as a transition moment directions in agreement with experimental directions. The results of these calculations indicate that the conservative circular dichroism spectrum of B-form DNA and the nonconservative spectrum of RNA (and A-form DNA) arise as a consequence of the distance between the paired bases and the helix axis. The negative nonconservative spectrum of C-form DNA was calculated and shown also to result from the distance of the paired bases from the helix axis. Several other conspicuous geometric parameters of DNA and RNA were investigated and were found to be less significant in their effects upon the spectral differences. Theoretical calculations on a four-stranded DNA model which has paired bases similarly related to the helix axis as RNA and A-form DNA was found to yield a low intensity, nonconservative circular dichroism spectrum.
    Additional Material: 12 Ill.
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  • 8
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 13 (1974), S. 779-790 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: X-ray diffraction and stereochemical analyses were used to study the hydrated structure of the helical amylose polymorph having a fiber repeat spacing of 8 Å. Intensity calculations using computer models confirmed six as the number of residues per turn and supported the space group P212121. Both diffraction intensity and stereochemical methods indicate the suitability of residue G3 from the potassium acetate complex of cyclohexaamylose as opposed to residues with longer O(4)-O(1) vectors. Comparison of the present results with those obtained for V amylose dehydrate indicated no major conformational differences between the two helix skeletons. A net helical rotation of approximately 30° accompanied the hydrate-dehydrate transition and the rotational position in the hydrate allowed packing that was less close. Hydration water molecules were not located; noncarbohydrate peaks on the electron density maps were primarily due to Fourier series termination errors.
    Additional Material: 4 Ill.
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  • 9
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 13 (1974), S. 977-986 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Theoretical calculations of the near ultraviolet (uv) circular dichroism of double-helical DNA and RNA models were performed in order to evaluate the effects, on the calculated circular dichroism, of including the interactions of near uv quantum transitions of the nucleic acid bases with classical polarizable bonds of the sugar-phosphate backbone. Double-helical models (A-form, B-form, and C-form DNA and RNA-11) from X-ray diffraction data were used in the calculations. The results indicate that the contributions to the circular dichroism in the near uv region, of these types of interactions, provide calculated spectra that are slightly altered from calculated spectra when only base-base transition interactions were considered.
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  • 10
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 14 (1975), S. 1487-1501 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Visually integrated, flat-plate film data were collected from oriented filaments of V amylose dehydrated made from dimethyl sulfoxide-amylose; and X-ray diffraction and stereochemical methods were used to search a multidimensional parameter space for the most satisfactory description of the crystal and molecular structure. Results indicate that the helical chains are left-handed and that they pack into the unit cell in an antiparallel arrangement conforming to space group P212121. Packing is very compact with several O …. O contacts in the range 2.70-2.85 Å between both parallel and antiparallel pairs of chains. Other characteristics of the final model are residue geometry similarity to residue 3 from potassium acetate-cyclohexamylose, O(2)i-O(3)i+1 distance of 2.75 Å, O(6) gg, and O(6)i-O(2)i-6 distance of 2.84 Å. Proton magnetic resonance studies of dried, crystalline V amylose dehydrate powder showed only 0.15 water per glucose residue.
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