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  • Nucleic acid structure, Phsyical and Biochemical Characterisation of DNA  (2)
  • Polymer and Materials Science  (2)
  • 1
    Electronic Resource
    Electronic Resource
    Bognor Regis [u.a.] : Wiley-Blackwell
    Journal of Polymer Science Part B: Polymer Physics 33 (1995), S. 2295-2305 
    ISSN: 0887-6266
    Keywords: free volume ; viscoelastic properties ; physical aging ; the Doolittle equation ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The dependence of physical properties on temperature and thermal history of glassy polycarbonate is examined. The average stress relaxation time increases during isothermal aging and with decreasing cooling rate. The temperature dependence of the stress relaxation time was compared with a free volume function calculated from specific volume data reported by Zoller by means of the Simha-Somcynsky theory and with a fractional free volume measured by ortho-positronium annihilation. We report in addition comparisons between free volume fractions extracted from volume data, and creep measurements for polystyrene, and stress relaxation data for poly(vinyl acetate) given by Kovacs et al., Schwarzl and Zahradnik, and Meyer et al. These investigations suggest that in the glassy state the Doolittle equation is valid only in isothermal aging experiments. It follows that in expressing the polymer mobility not only a temperature-dependent free volume but additional temperature-dependent processes need to be considered. © 1995 John Wiley & Sons, Inc.
    Additional Material: 15 Ill.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Bognor Regis [u.a.] : Wiley-Blackwell
    Journal of Polymer Science Part B: Polymer Physics 32 (1994), S. 2637-2644 
    ISSN: 0887-6266
    Keywords: free volume in amorphous polymers ; positron annihilation measurements ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Positron annihilation lifetime measurements are reported for four monodisperse polystyrenes with molar mass M = 4,000, 9,200, 25,000, and 400,000. The temperature dependences of orthopositronium (o-Ps) lifetime (τ3) and intensity (I3) were measured from 5°C to Tg + 30°C for each sample. From these data, the free volume hole size, 〈vf(τ3)〉, and fractional free volume hps=CI3〈vf(τ3)〉 were calculated. The temperature dependences of τ3, 〈vf(τ3)〉 and hps show a discrete change in slope at an effective glass transition temperature, Tg,ps, which is measurably below the conventional bulk Tg. This suggests that τ3 is sensitive to large holes which retain their liquid-like mobility in the glassy state. Good agreement was found for T 〉 hg,ps between hps and the theoretical free volume fraction hth deduced from experimental P-V-T data for polystyrene using the statistical mechanical theory of Simha and Somcynsky. Below Tg,ps, deviations between hps and hth are observed, hps falling increasingly below hth as temperature decreases. Whereas hps and hth depend strongly on M in the melt, each essentially independent of M in the glass. A free volume quantity, computed from the bulk volume, which is in good numerical agreement with the Simha-Somcynsky h-function in the melt, gives improved agreement with hps in the glassy state. © 1994 John Wiley & Sons, Inc.
    Additional Material: 6 Ill.
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  • 3
    Publication Date: 2016-01-09
    Description: Due to the long-range nature of high-order interactions between distal components in a biomolecule, transition dynamics of tertiary structures is often too complex to profile using conventional methods. Inspired by the exploded view in mechanical drawing, here, we used laser tweezers to mechanically dissect high-order DNA structures into two constituting G-quadruplexes in the promoter of the human telomerase reverse transcriptase (hTERT) gene. Assisted with click-chemistry coupling, we sandwiched one G-quadruplex with two dsDNA handles while leaving the other unit free. Mechanical unfolding through these handles revealed transition dynamics of the targeted quadruplex in a native environment, which is named as native mechanical segmentation (NMS). Comparison between unfolding of an NMS construct and that of truncated G-quadruplex constructs revealed a quadruplex–quadruplex interaction with 2 kcal/mol stabilization energy. After mechanically targeting the two G-quadruplexes together, the same interaction was observed during the first unfolding step. The unfolding then proceeded through disrupting the weaker G-quadruplex at the 5'-end, followed by the stronger G-quadruplex at the 3'-end via various intermediates. Such a pecking order in unfolding well reflects the hierarchical nature of nucleic acid structures. With surgery-like precisions, we anticipate this NMS approach offers unprecedented perspective to decipher dynamic transitions in complex biomacromolecules.
    Keywords: Nucleic acid structure, Phsyical and Biochemical Characterisation of DNA
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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  • 4
    Publication Date: 2015-01-10
    Description: Structural features of nucleic acids have become an integral part of current biomedical research. Highly selective and readily performed methods with little toxicity that target guanosines in non-duplex nucleic acids are needed, which led us to search for an effective agent for guanosine sequencing. Treatment of DNA or RNA with potassium tungstate and hydrogen peroxide produced damaged guanosines in DNA or RNA sequences. The damaged guanosines in non-duplex DNA could be cleaved by hot piperidine. Similarly, damaged guanosines in non-duplex RNA could be cleaved by aniline acetate. We could identify structural features of nucleic acid using this strategy instead of dimethyl sulphate and Ribonuclease T1.
    Keywords: Nucleic acid structure, Phsyical and Biochemical Characterisation of DNA
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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