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  • Two-dimensional polyacrylamide gel electrophoresis  (29)
  • Physical Chemistry  (13)
  • Wiley-Blackwell  (42)
  • 1
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 4 (1991), S. 141-148 
    ISSN: 0894-3230
    Keywords: Organic Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The influence of solvation on the Z - E isomerization process of three representative molecules of simple push-pull ethylenes [H2N(H)C1=C2(H)R = NO2, COH and CN] derived from aminoethylene was investigated by means of RHF-SCF ab initio calculations at the 3-21 + G level. Solute-solvent interactions were modelled by a cavity model. The shape of the cavity is based on electronic isodensity surfaces. By using an ellipsoidal cavity very close to the isodensity surface, the perturbation due to the solvent takes an analytical form which is incorporated into the Hartree-Fock equations and leads to efficient quantum chemical computations. The polarization of the solutes under the influence of the solvent is noticeable and was analysed in detail. Similarly, the barriers to internal rotations are substantially modified by the solvent: the barrier around the C=C double bond is appreciably decreased in the thermal mechanism whereas its lowering is less important in the anionic mechanism; in contrast, the barrier around the C-1—N bond is slightly increased. The variation of the barriers with the nature of the acceptor group is fairly well reproduced by the computations. The electronic structure of the push-pull ethylene molecules and the modifications of this structure under the influence of the solvent are analysed in detail.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Chemical Kinetics 21 (1989), S. 51-61 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have carried out a kinetic study of the 4-pyridinecarboxaldehyde plus n-hexylamine system, at 25°C, in water-dioxan mixtures (0-60% v/v) and in the pH range pKa + 1.5 〉 pH 〉 pKa - 1.5, where pKa is the pK value of the conjugate acid of the amine. The results obtained could be interpreted in terms of a rate constant for Schiff's base hydrolysis and a rate constant for the reaction between the nonprotonated n-hexylamine and the nonhydrated form of 4-pyridinecarboxaldehyde. Both constants decrease sharply as the dioxan content of the solvent increases, in a manner consistent with Marshall's model [J. Phys. Chem., 74, 346 (1970)]. It is suggested that the transition state of the rate-limiting step (carbinolamine dehydration) is highly solvated by water molecules and has a high separation of charges.
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  • 3
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction between Co(en)2(2-pzCO2)2+ (bis-ethylenediamine (2-pyrazinecarboxylato)cobalt(III)) and Fe(CN)5H2O3- (aquopentacyanoferrate(II)) to form the binuclear complex [(en)2Co( μ-pzCO2)Fe(CN)5]- has been studied in several isodielectric binary mixtures at 298.2 K (cosolvents: methanol, ethanol, tertbutyl alcohol, ethyleneglycol, and glycerol). Results were rationalized by using a free energy relationship. The importance of correcting the rate constants obtained in the different mixtures from the ionic strength influence has been shown. © 1995 John Wiley & Sons, Inc.
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  • 4
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Time-resolved investigations of the atomic resonance fluorescence Sr(53P1 → 51S0) and the molecular chemiluminescence from SrCl(A2Π1/2,3/2, B2Σ+ → X2Σ+) are reported following the reaction of the electronically excited strontium atom, Sr(5s5p(3PJ)), 1.807 eV above its 5s2(1S0) electronic ground state, with CH2Cl2. The optically metastable strontium atom was generated by pulsed dye-laser excitation of ground state strontium vapor to the Sr(53P1) state at λ = 689.3 nm (Sr(53P1 ← 51S0)) at elevated temperature (850 K) in the presence of excess helium buffer gas in which rapid Boltzmann equilibration within the 53PJ manifold takes place. Sr(53PJ) was then monitored by time-resolved atomic fluorescence from Sr(53P1) at the resonance wavelength together with chemiluminescence from electronically excited SrCl resulting from reaction of the excited atom with CH2Cl2. The molecular systems recorded in the time-domain were SrCl(A2Π1/2 → X2Σ+) (Δν = 0, λ = 674 nm), SrCl(A2Π3/2 → X2Σ+) (Δν = 0, λ = 660 nm), and SrCl(B2Σ+ → X2Σ+) (Δν = 0, λ = 636 nm). Both the A2Π (179.0 kJ mol-1) and (B2Σ+(188.0) kJ mol-1) states of SrCl are energetically accessible on collision between Sr(3P) and CH2Cl2. Exponential decay profiles for both the atomic and molecular (A,B - X) chemiluminescence emission are observed and the first-order decay coefficients characterized in each case. These are found to be equal under identical conditions and hence SrCl(A2Π, B2Σ+) are shown to arise from direct Cl-atom abstractions on reaction with this halogenated species. The combination of integrated molecular and atomic intensity measurements, coupled with optical sensitivity calibration, yields estimations of the branching ratios into the A1/2,3/2, B, and X states arising from Sr(53 PJ) + CH2Cl2 which are found to be as follows: A1/2, 3.0 × 10-3; A3/2, 1.7 × 10-3; B, 4.4 × 10-4 yielding ΣSrCl(A1/2 + A3/2 + B) = 5.1 × 10-3. As only the X, A and B states of SrCl are accessible on reaction, this indicates an upper limit for the branching ratio into the ground state of 0.995. The present results are compared with previous time-resolved measurements on SrF, Cl, Br(A2Π,B2Σ+ - X2Σ+) that we have reported on various halogenated species and with analogous chemiluminescence studies on Sr(3P) with other halides obtained from molecular beam measurements. The results are further compared with those from a series of previous analogous investigations in the time-domain we have presented of molecular emissions from CaF, Cl, Br, I (A,B - X) arising from the collisions of Ca(43PJ) with appropriate halides and with branching ratio data for Ca(43PJ) obtained in beam measurements. © 1995 John Wiley & Sons, Inc.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Chemical Kinetics 28 (1996), S. 57-60 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electron transfer reaction [(NH3)4COIII(μ-pzCO2)FeII(CN)5]- → [(NH3)4COII(μ-pzCO2)FeIII(CN)5]- has been studied in water-cosolvent mixtures at ionic strength of I = 0.5 mol dm-3 (NaClO4). A multiparameter regression coefficients have been compared to those obtained for the same reaction to a different ionic strength (I = 2.8 10-3 mol dm-3). The magnitude of these coefficients changes with the ionic strength. An explanation is given for this behavior. © 1996 John Wiley & Sons, Inc.
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  • 6
    Electronic Resource
    Electronic Resource
    Weinheim : Wiley-Blackwell
    Electrophoresis 16 (1995), S. 1225-1230 
    ISSN: 0173-0835
    Keywords: Testis ; Spermatogenesis ; Two-dimensional polyacrylamide gel electrophoresis ; Protein map ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Spermatogenesis is a process in the testis that involves meiotic cell division and spermiogenesis. The mechanisms of regulation and its associated proteins are mostly unknown. This publication shows the two-dimensional (2-D) gel electrophoresis protein map obtained from rat testis using nonlinear 3.5-10 immobilized pH gradients for the first-dimensional separation. Eighteen proteins were successfully identified in the SWISS-PROT protein database using amino acid analysis of proteins recovered from polyvinylidene difluoride (PVDF) membranes and verified for one of them by comparison with Anderson's rat liver reference map. Fourteen new polypeptides were identified and four were previously known. Two of these new proteins were closely related to the spermatogenetic process. T-complex protein 1 is expressed in large amounts in germ cells. Androgen-dependent sperm-coating glycoprotein is secreted by epididymal cells. In order to detect changes in protein expression during meiosis and spermiogenesis, spermatocytes and round spermatid cell populations were purified by centrifugal elutriation and compared. In this way several proteins not found in the spermatocyte 2-D images could be highlighted. The sperm-coating glycoprotein was thus shown to be present in large amounts in round spermatids.
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  • 7
    ISSN: 0173-0835
    Keywords: Proteome ; Genome ; Two-dimensional polyacrylamide gel electrophoresis ; Post-translational modifications ; Vector maps ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Additional Material: 4 Ill.
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  • 8
    ISSN: 0173-0835
    Keywords: Calcium-binding protein ; Two-dimensional polyacrylamide gel electrophoresis ; Growth related protein ; Post-translational modification ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: The translationally controlled tumor protein (TCTP) is a growth-related protein which is regulated at the translational level. It is present in mammals, higher plants and Saccharomyces cerevisiae. This study was undertaken to localize and further characterize the TCTP in human cell lysates using two-dimensional gel electrophoresis, monoclonal antibodies, and 45Ca-gel overlay. TCTP was found in several healthy and tumoral cells including erythrocytes, hepatocytes, macrophages, platelets, keratinocytes, erythroleukemia cells, gliomas, melanomas, hepatoblastomas, and lymphomas. It could not be detected in kidney and renal cell carcinoma (RCC). A monoclonal antibody raised against TCTP detected three isoforms likely due to post-translational modifications. A calcium binding property was found as well as heat stability and cytoplasmic localization. The high degree of homology from plants to man and its expression in many tissues suggests that TCTP most likely has a cell housekeeping function.
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  • 9
    ISSN: 0173-0835
    Keywords: Membrane proteins ; Solubility ; Two-dimensional polyacrylamide gel electrophoresis ; Proteome ; Escherichia coli ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: We describe the extraction and enrichment of membrane proteins for separation by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) after differential solubilization of an Escherichia coli cell lysate. In a simple three-step sequential solubilization protocol applicable for whole cell lysates, membrane proteins are partitioned from other cellular proteins by their insolubility in solutions conventionally used for isoelectric focusing (IEF). As the first step, Tris-base was used to solubilize many cytosolic proteins. The resultant pellet was then subjected to conventional solubilizing solutions (urea, 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate, dithiothreitol, Tris, carrier ampholytes). Following the completion of this step, 89% of the initial E. coli sample mass was solubilized. Finally, the membrane protein rich pellet was partially solubilized using a combination of urea, thiourea, tributyl phosphine and multiple zwitterionic surfactants. Using N-terminal sequence tagging and peptide mass fingerprinting we have identified 11 membrane proteins from this pellet. Two of these outer membrane proteins (Omp), OmpW and OmpX, have previously been known only as an open reading frame in E. coli, while OmpC, OmpT and OmpTOLC have not previously been identified on a 2-D gel. The prefractionation of an entire cell lysate into multiple fractions, based on solubility, results in simplified protein patterns following 2-D PAGE using broad-range pH 3.5-10 immobilized pH gradients (IPGs). Additional advantages of sample prefractionation are that protein identification and gel matching, for database construction, is a more manageable task, the procedure requires no specialized apparatus, and the sequential extraction is conducted in a single centrifuge tube, minimizing protein loss.
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  • 10
    ISSN: 0173-0835
    Keywords: Glycoprotein ; Two-dimensional polyacrylamide gel electrophoresis ; α1-Antitrypsin ; α2-HS Glycoprotein ; Protein isoforms ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Chemistry and Pharmacology
    Notes: Two-dimensional (2-D) electrophoresis is the preferred method for separating the glycoforms of proteins. The isoforms usually present as ‘trains’ of spots in the first dimension and may also differ in molecular weight. The primary goal for analyzing the carbohydrate content of glycoprotein spots is to understand the ‘rules’ which govern the migration of glycoproteins in 2-D electrophoresis. These rules can then be used to produce predictive vectors to interpret changes in glycosylation patterns. Techniques for the analysis of oligosaccharides released from glycoproteins which have been electroblotted to PVDF membrane after one-dimensional (1-D) and 2-D preparative gel electrophoresis are described. The oligosaccharides are removed enzymatically (PNGase F of N-linked oligosaccharides) or chemically (β-elimination of O-linked oligosaccharides) and separated by high performance anion exchange chromatography (HPAEC-PAD) and identified by electrospray ionization mass spectrometry (ESI-MS) or analyzed directly by ESI-MS. After enzymic removal of the N-linked oligosaccharides the protein spots can be further analyzed by Edman sequence tagging for identification and quantitation of the protein and by acid hydrolysis for monosaccharide analysis of the O-linked oligosaccharides. These approaches have been proved on 1-D PAGE electroblotted bovine fetuin and human glycophorin A and then used to analyze two abundant proteins which separate as glycoforms on 2-D PAGE preparative narrow range (pH 4.5-5.5) blots of human plasma: α2-HS glycoprotein (human fetuin) and α1-antitrypsin (α1-protease inhibitor). It is apparent that both the macroheterogeneity (site occupation) and microheterogeneity (diversity of structures) of the glycosylation contribute to the separation of protein isoforms in 2-D PAGE.
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