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  • Dicopper trihydroxide nitrite  (1)
  • Monte Carlo  (1)
  • 1990-1994  (2)
  • 1965-1969
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    European biophysics journal 21 (1992), S. 313-320 
    ISSN: 1432-1017
    Keywords: Monte Carlo ; Crystal water ; Structure refinement
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract The space in the unit cell of a metmyoglobin crystal not occupied by myoglobin atoms was filled with water using Monte Carlo calculations. Independent calculations with different amounts of water have been performed. Structure factors were calculated using the water coordinates thus obtained and the known coordinates of the myoglobin atoms. A comparison with experimental structure factors showed that both the low and the high resolution regime could be well reproduced with 814 Monte Carlo water molecules per unit cell with a B-value of 50 Å2. The Monte Carlo water molecules yield a smaller standard R-value (0.166) than using a homogeneous electron density for the simulation of the crystal water (R = 0.212). A reciprocal space refinement of the water and the protein coordinates has been performed. Monte Carlo calculations can be used to obtain information for crystallographically invisible parts of the unit cell and yield better coordinates for the visible part in the refinement.
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 0044-2313
    Keywords: Dicopper trihydroxide nitrite ; crystal structure ; i.r., Raman spectra ; Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Lattice Vibration Spectra. LXXVI. On Basic Copper Salts  -  Crystal Structure, IR and Raman Spectra of Cu2(OH)3NO2Single-crystal X-ray as well as IR and Raman data of Cu2(OH)3NO2 are presented and discussed with respect to an order-disorder (OD) phase transition and the strength of hydrogen bonds. Cu2(OH)3NO2 crystallizes pseudosymmetrically in the monoclinic space group P21/m (Z = 2, a = 562.22(4), b = 605.94(5), c = 663.55(4) pm and β = 95.415(5)°) forming a layered structure of edge-connected, elongated CuO6 octahedra (final R value 2.5% for 1047 symmetry averaged reflections with I ≥ 2.5 μ1). The NO2- ions are on a split position with dynamic disordering at ambient temperature. On temperature lowering the disorder is frozen out with a symmetry decrease to space group P21. The disorder of the NO2- ions causes four different arrangements of OH(2)- with different strengths of the H…O hydrogen bonds present OD stretching modes in the spectra of isotopically dilute samples 2628, 2535, 2435, and 2343 cm-1 at 90 K. The OH(1)- ions form weak H…N H-bonds to the lone-pair of the nitrogen atoms of the NO2- ions (vOD 2563 cm-1).
    Notes: Die Kristallstruktur sowie die IR- und Raman-Spektren von Cu2(OH)3NO2 werden mitgeteilt und im Hinblick auf eine Ordnungs-Unordnungs(OD)-Phasenumwandlung sowie die Stärke der vorhandenen Wasserstoffbrücken diskutiert. Das basische Nitrit kristallisiert pseudosymmetrisch in der monoklinen Raumgruppe P21/m (Z = 2, R = 2,5%, 1047 symmetriegemittelte Reflexe mit 1 〉 2,5 μ1). Cu2(OH)3NO2 bildet eine Schichtenstruktur kantenverknüpfter, gestreckter CuO6-Oktaeder. Die Nitritionen befinden sich auf einer Splitlage mit dynamischer Fehlordnung bei Raumtemperatur. Bei niedrigeren Temperaturen friert die Fehlordnung unter Bildung von NO2--Zick-Zack-Ketten und Symmetrieerniedrigung zu P21 aus. Aufgrund der Fehlordnung der NO2--Ionen ergeben sich für die OH(2)--Ionen vier verschiedene Anordnungen mit entsprechend unterschiedlich starken H-Brücken (H…O). Die OH(1)--Ionen bilden H…N-Wasserstoffbrücken zum freien Elektronenpaar des N-Atoms der NO2--Ionen.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
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