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  • 1
    Publication Date: 2016-06-08
    Description: Author(s): Yusuke Wakabayashi, Daisuke Nakajima, Yuki Ishiguro, Kenta Kimura, Tsuyoshi Kimura, Satoshi Tsutsui, Alfred Q. R. Baron, Kouichi Hayashi, Naohisa Happo, Shinya Hosokawa, Kenji Ohwada, and Satoru Nakatsuji Structural fluctuation in Ba 3 CuSb 2 O 9 , which is proposed to exhibit a spin-orbital entangled state, has been studied by diffuse x-ray scattering, x-ray fluorescence holography, and inelastic x-ray scattering. Two kinds of spatial fluctuations are observed: temperature-independent and temperature-depe… [Phys. Rev. B 93, 245117] Published Tue Jun 07, 2016
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 2
    Publication Date: 2014-05-03
    Description: PINK1 (PTEN induced putative kinase 1) and PARKIN (also known as PARK2) have been identified as the causal genes responsible for hereditary recessive early-onset Parkinsonism. PINK1 is a Ser/Thr kinase that specifically accumulates on depolarized mitochondria, whereas parkin is an E3 ubiquitin ligase that catalyses ubiquitin transfer to mitochondrial substrates. PINK1 acts as an upstream factor for parkin and is essential both for the activation of latent E3 parkin activity and for recruiting parkin onto depolarized mitochondria. Recently, mechanistic insights into mitochondrial quality control mediated by PINK1 and parkin have been revealed, and PINK1-dependent phosphorylation of parkin has been reported. However, the requirement of PINK1 for parkin activation was not bypassed by phosphomimetic parkin mutation, and how PINK1 accelerates the E3 activity of parkin on damaged mitochondria is still obscure. Here we report that ubiquitin is the genuine substrate of PINK1. PINK1 phosphorylated ubiquitin at Ser 65 both in vitro and in cells, and a Ser 65 phosphopeptide derived from endogenous ubiquitin was only detected in cells in the presence of PINK1 and following a decrease in mitochondrial membrane potential. Unexpectedly, phosphomimetic ubiquitin bypassed PINK1-dependent activation of a phosphomimetic parkin mutant in cells. Furthermore, phosphomimetic ubiquitin accelerates discharge of the thioester conjugate formed by UBCH7 (also known as UBE2L3) and ubiquitin (UBCH7 approximately ubiquitin) in the presence of parkin in vitro, indicating that it acts allosterically. The phosphorylation-dependent interaction between ubiquitin and parkin suggests that phosphorylated ubiquitin unlocks autoinhibition of the catalytic cysteine. Our results show that PINK1-dependent phosphorylation of both parkin and ubiquitin is sufficient for full activation of parkin E3 activity. These findings demonstrate that phosphorylated ubiquitin is a parkin activator.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Koyano, Fumika -- Okatsu, Kei -- Kosako, Hidetaka -- Tamura, Yasushi -- Go, Etsu -- Kimura, Mayumi -- Kimura, Yoko -- Tsuchiya, Hikaru -- Yoshihara, Hidehito -- Hirokawa, Takatsugu -- Endo, Toshiya -- Fon, Edward A -- Trempe, Jean-Francois -- Saeki, Yasushi -- Tanaka, Keiji -- Matsuda, Noriyuki -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2014 Jun 5;510(7503):162-6. doi: 10.1038/nature13392. Epub 2014 Jun 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba 277-8561, Japan. ; Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, The University of Tokushima, Tokushima 770-8503, Japan. ; Research Center for Materials Science, Nagoya University, Nagoya, Aichi 464-8602, Japan. ; Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Graduate School of Agriculture, Shizuoka University, 836 Ohya, Shizuoka 422-8529, Japan. ; Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan. ; 1] JST-CREST/Department of Chemistry, Graduate School of Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan [2] JST-CREST/Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto 603-8555, Japan. ; McGill Parkinson Program, Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec H3A 2B4, Canada. ; Department of Pharmacology & Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada. ; 1] Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan [2] Protein Metabolism Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo 156-8506, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24784582" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Enzyme Activation ; Fibroblasts ; HeLa Cells ; Humans ; Membrane Potential, Mitochondrial ; Mice ; Mitochondria/metabolism ; Mutation/genetics ; Parkinson Disease ; Phosphorylation ; Phosphoserine/metabolism ; Protein Kinases/*metabolism ; Ubiquitin/chemistry/*metabolism ; Ubiquitin-Protein Ligases/genetics/*metabolism ; Ubiquitination
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2017-06-06
    Description: Author(s): Takuya Aoyama, Yoshinao Hasegawa, Shojiro Kimura, Tsuyoshi Kimura, and Kenya Ohgushi The magnetoelectric coupling in possible Kitaev spin liquid α − RuCl 3 with the layered honeycomb structure was examined. We observed a remarkable anisotropic magnetodielectric effect in the zigzag-type antiferromagnetic phase; there is a large suppression in dielectric constant, when both electric and… [Phys. Rev. B 95, 245104] Published Mon Jun 05, 2017
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 4
    Publication Date: 2013-09-17
    Description: Author(s): K. Matsuda, T. Nagao, Y. Kajihara, M. Inui, K. Tamura, J. Nakamura, K. Kimura, M. Yao, M. Itou, Y. Sakurai, and N. Hiraoka The electron momentum density (EMD) in liquid silicon (Si) has been measured by synchrotron-based Compton scattering. The observed variation in the valence EMD upon melting, reflecting a semiconductor-metal transition of Si, is well explained by the collapse of the Jones zone of crystalline Si. Howe... [Phys. Rev. B 88, 115125] Published Mon Sep 16, 2013
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 5
    Publication Date: 2015-07-11
    Description: Author(s): Pranjal Kumar Gogoi, Lorenzo Sponza, Daniel Schmidt, Teguh Citra Asmara, Caozheng Diao, Jason C. W. Lim, Sock Mui Poh, Shin-ichi Kimura, Paolo E. Trevisanutto, Valerio Olevano, and Andrivo Rusydi Electron-electron (e-e) and electron-hole (e-h) interactions are often associated with many exotic phenomena in correlated electron systems. Here, we report an observation of anomalous excitons at 3.75, 4.67, and 6.11 eV at 4.2 K in bulk SrTiO 3 . Fully supported by ab initio G W Bethe-Salpeter equatio… [Phys. Rev. B 92, 035119] Published Thu Jul 09, 2015
    Keywords: Electronic structure and strongly correlated systems
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  • 6
    Publication Date: 2015-06-12
    Description: Author(s): G. Eguchi, K. Kuroda, K. Shirai, Y. Ando, T. Shinjo, A. Kimura, and M. Shiraishi We report the electric transport study of the three-dimensional topological insulator TlBiSe 2 . We propose an analysis procedure which determines the two-carrier transport properties in precision. Magnetotransport properties reveal a multicarrier conduction of high- and low-mobility electrons in the... [Phys. Rev. B 91, 235117] Published Thu Jun 11, 2015
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
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  • 7
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    American Physical Society (APS)
    Publication Date: 2016-06-01
    Description: Author(s): Koji Hashimoto and Taro Kimura We show that the edge states of the four-dimensional class A system can have topological charges, which are characterized by Abelian/non-Abelian monopoles. The edge topological charges are a new feature of relations among theories with different dimensions. From this novel viewpoint, we provide a no… [Phys. Rev. B 93, 195166] Published Tue May 31, 2016
    Keywords: Electronic structure and strongly correlated systems
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  • 8
    Publication Date: 2011-05-26
    Description: Author(s): N. D. Lanzillotti-Kimura, A. Fainstein, B. Perrin, B. Jusserand, L. Largeau, O. Mauguin, and A. Lemaitre The enhancement of the ultrafast coherent generation and detection of acoustic phonons in an optical microcavity is experimentally studied. We report pump-probe terahertz ultrasonic experiments in an optical microcavity as a function of laser energy and probe incidence angle. By tuning the laser wav... [Phys. Rev. B 83, 201103] Published Wed May 25, 2011
    Keywords: Electronic structure and strongly correlated systems
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  • 9
    Publication Date: 2015-02-19
    Description: Author(s): Takuya Aoyama, Ayato Iyama, Katsuya Shimizu, and Tsuyoshi Kimura In type-II multiferroics ferroelectricity is driven by magnetism, and the coupling between the two orders is generally larger than in conventional multiferroic materials. However, a critical problem that needs to be overcome for type-II multiferroics is that their polarization is far too low to be useful for applications. In this Rapid Communication, a group of researchers from Osaka University, Japan, demonstrate that in three prototypical manganites (TbMnO 3 , DyMnO 3 , and GdMnO 3 ) magnetic field can induce giant changes in polarization under high pressure. In the gadolinium compound, the change they have observed reaches the record high value of 1.3 μ C/cm 2 among the spin-driven multiferroics. [Phys. Rev. B 91, 081107] Published Wed Feb 18, 2015
    Keywords: Electronic structure and strongly correlated systems
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  • 10
    Publication Date: 2015-07-05
    Description: Author(s): N. Kimura, N. Kabeya, H. Aoki, K. Ohyama, M. Maeda, H. Fujii, M. Kogure, T. Asai, T. Komatsubara, T. Yamamura, and I. Satoh We present the temperature–pressure–magnetic-field phase diagram of the itinerant-electron metamagnet UCoAl determined from the ac susceptibility measurement. The quantum critical point (QCP) was found to be located at 2.9 ± 0.2  GPa ( ≡ P QCP ) and 130 ± 5 kOe. In addition to the determination of the phase … [Phys. Rev. B 92, 035106] Published Thu Jul 02, 2015
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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