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  • File content; File format; File name; File size; Uniform resource locator/link to file  (1)
  • Phytoplankton functional groups  (1)
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  • 1
    Publication Date: 2023-05-12
    Description: Here we provide optimised vertical eddy diffusivity estimates for the PeECE III and KOSMOS 2013 mesocosm experiment, obtained from a model-based reanalysis. These diffusivities are derived from the observed temperature and salinity profiles that have been published in Schulz et al., 2008. Furthermore, we make our model code available, providing an adjustable tool to simulate vertical mixing in any other pelagic mesocosm. We also provide the interpolated and regridded temperature and salinity profiles of the PeECE III experiment as well as the density profiles which we calculated from the temperature and salinity profiles using the R package seacarb (Lavigne et al., 2011). These data files are required as input to run simulations of the PeECE III experiment with the 1D mesocosm mixing model. The columns of the environmental files (required input files for the model) from left to right are: Experiment year, month, day, Julian day, photosynthetically active radiation (PAR) [W/m^2], temperature [C], salinity [PSU], CO2 concentration [ppm], wind speed [m/s]. The rows list the respective value of each hour of the experiment. Temperature and salinity in this table are hourly interpolated values of the daily measurements published by the PeECE III team (2005). PAR has been calculated from global radiation data of Bergen provided by Olseth et al., 2005. In the temperature, salinity and density files, the rows indicate the depth (0.5 m resolution, the first row is the surface, the last row is the bottom), whereas the columns indicate the experiment time at an hourly resolution.
    Keywords: File content; File format; File name; File size; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 20 data points
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  • 2
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2007. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 112 (2007): C08001, doi:10.1029/2006JC003852.
    Description: Application of biogeochemical models to the study of marine ecosystems is pervasive, yet objective quantification of these models' performance is rare. Here, 12 lower trophic level models of varying complexity are objectively assessed in two distinct regions (equatorial Pacific and Arabian Sea). Each model was run within an identical one-dimensional physical framework. A consistent variational adjoint implementation assimilating chlorophyll-a, nitrate, export, and primary productivity was applied and the same metrics were used to assess model skill. Experiments were performed in which data were assimilated from each site individually and from both sites simultaneously. A cross-validation experiment was also conducted whereby data were assimilated from one site and the resulting optimal parameters were used to generate a simulation for the second site. When a single pelagic regime is considered, the simplest models fit the data as well as those with multiple phytoplankton functional groups. However, those with multiple phytoplankton functional groups produced lower misfits when the models are required to simulate both regimes using identical parameter values. The cross-validation experiments revealed that as long as only a few key biogeochemical parameters were optimized, the models with greater phytoplankton complexity were generally more portable. Furthermore, models with multiple zooplankton compartments did not necessarily outperform models with single zooplankton compartments, even when zooplankton biomass data are assimilated. Finally, even when different models produced similar least squares model-data misfits, they often did so via very different element flow pathways, highlighting the need for more comprehensive data sets that uniquely constrain these pathways.
    Description: This research was supported by the U.S. National Science Foundation through the JGOFS Synthesis and Modeling Project (OCE-0097285) and the National Aeronautics and Space Agency (NAG5-11259 and NNG05GO04G), as well as numerous other grants to the various investigators who participated.
    Keywords: Ecosystem model comparison ; Biogeochemical data assimilation ; Phytoplankton functional groups
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
    Format: text/plain
    Format: image/tiff
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