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  • 1
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    Buoyancy arrest and bottom Ekman transport. Part II : oscillating flow (2010)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2010. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 40 (2010): 636-655, doi:10.1175/2009JPO4267.1.
    Description: The effects of a sloping bottom and stratification on a turbulent bottom boundary layer are investigated for cases where the interior flow oscillates monochromatically with frequency ω. At higher frequencies, or small slope Burger numbers s = αN/f (where α is the bottom slope, N is the interior buoyancy frequency, and f is the Coriolis parameter), the bottom boundary layer is well mixed and the bottom stress is nearly what it would be over a flat bottom. For lower frequencies, or larger slope Burger number, the bottom boundary layer consists of a thick, weakly stratified outer layer and a thinner, more strongly stratified inner layer. Approximate expressions are derived for the different boundary layer thicknesses as functions of s and σ = ω/f. Further, buoyancy arrest causes the amplitude of the fluctuating bottom stress to decrease with decreasing σ (the s dependence, although important, is more complicated). For typical oceanic parameters, arrest is unimportant for fluctuation periods shorter than a few days. Substantial positive (toward the right when looking toward deeper water in the Northern Hemisphere) time-mean flows develop within the well-mixed boundary layer, and negative mean flows exist in the weakly stratified outer boundary layer for lower frequencies and larger s. If the interior flow is realistically broad band in frequency, the numerical model predicts stress reduction over all frequencies because of the nonlinearity associated with a quadratic bottom stress. It appears that the present one-dimensional model is reliable only for time scales less than the advective time scale that governs interior stratification.
    Description: This research was sponsored by the National Science Foundation, Physical Oceanography Program through Grant OCE 0647050.
    Keywords: Ekman pumping/transport ; Buoyancy
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Wave-driven inner-shelf motions on the Oregon coast (2010)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2009. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 39 (2009): 2942-2956, doi:10.1175/2009JPO4041.1.
    Description: Recent work by S. Lentz et al. documents offshore transport in the inner shelf due to a wave-driven return flow associated with the Hasselmann wave stress (the Stokes–Coriolis force). This analysis is extended using observations from the central Oregon coast to identify the wave-driven return flow present and quantify the potential bias of wind-driven across-shelf exchange by unresolved wave-driven circulation. Using acoustic Doppler current profiler (ADCP) measurements at six stations, each in water depths of 13–15 m, observed depth-averaged, across-shelf velocities were generally correlated with theoretical estimates of the proposed return flow. During times of minimal wind forcing, across-shelf velocity profiles were vertically sheared, with stronger velocities near the top of the measured portion of the water column, and increased in magnitude with increasing significant wave height, consistent with circulation due to the Hasselmann wave stress. Yet velocity magnitudes and vertical shears were stronger than that predicted by linear wave theory, and more similar to the stratified “summer” velocity profiles described by S. Lentz et al. Additionally, substantial temporal and spatial variability of the wave-driven return flow was found, potentially due to changing wind and wave conditions as well as local bathymetric variability. Despite the wave-driven circulation found, subtracting estimates of the return flow from the observed across-shelf velocity had no significant effect on estimates of the across-shelf exchange due to along-shelf wind forcing at these water depths along the Oregon coast during summer.
    Description: This work was performed with the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO), funded primarily by the Gordon and Betty Moore Foundation and David and Lucile Packard Foundation. SL acknowledges support from NSF Ocean Science Grant #OCE-0548961. AK acknowledges support from the WHOI Coastal Ocean Institute Fellowship.
    Keywords: Waves, oceanic ; Ekman pumping/transport ; Coastlines ; Ocean circulation ; Gravity waves
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification (2017)
    John Wiley & Sons
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 745–761, doi:10.1002/2016JC012326.
    Description: Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ∼8.5, significantly elevated above that of the surrounding open ocean (∼8.0–8.1) as a consequence of daytime NEP (up to 112 mmol C m−2 h−1). Diurnal-averaged NEC was 390 ± 90 mmol CaCO3 m−2 d−1, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m−2 h−1. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.
    Description: NSF Grant Number: 1220529
    Description: 2017-07-31
    Keywords: Coral reef ; Ocean acidification ; Calcification ; Photosynthesis ; Coral bleaching
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  • 4
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    Buoyancy arrest and bottom Ekman transport. Part I : steady flow (2010)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2010. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 40 (2010): 621-635, doi:10.1175/2009JPO4266.1.
    Description: It is well known that along-isobath flow above a sloping bottom gives rise to cross-isobath Ekman transport and therefore sets up horizontal density gradients if the ocean is stratified. These transports in turn eventually bring the along-isobath bottom velocity, hence bottom stress, to rest (“buoyancy arrest”) simply by means of the thermal wind shear. This problem is revisited here. A modified expression for Ekman transport is rationalized, and general expressions for buoyancy arrest time scales are presented. Theory and numerical calculations are used to define a new formula for boundary layer thickness for the case of downslope Ekman transport, where a thick, weakly stratified arrested boundary layer results. For upslope Ekman transport, where advection leads to enhanced stability, expressions are derived for both the weakly sloping (in the sense of slope Burger number s = αN/f, where α is the bottom slope, N is the interior buoyancy frequency, and f is the Coriolis parameter) case where a capped boundary layer evolves and the larger s case where a nearly linearly stratified boundary layer joins smoothly to the interior density profile. Consistent estimates for the buoyancy arrest time scale are found for each case.
    Description: This research was supported by the National Science Foundation Physical Oceanography program through Grant OCE 0647050.
    Keywords: Ekman pumping/transport ; Buoyancy
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Observations and a model of net calcification declines in Palau's largest coral reef lagoon between 1992 and 2015 (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016147, doi:10.1029/2020JC016147.
    Description: Net ecosystem calcification (NEC) rates of Palau's largest lagoon and barrier reef system between 1992 and 2015 are estimated from sparse total alkalinity (TA) and salinity measurements and a tidal exchange model in which surface lagoon water transported offshore on the ebb tide is replaced by saltier (denser) ocean water that sinks to the bottom after entering the lagoon on the flood tide. Observed lagoon salinities are accurately reproduced by the model with no adjustable parameters. To accurately reproduce observed lagoon TA, NEC for the lagoon‐barrier reef system was 70 mmols m−2 day−1 from 1992 to 1998, 35 mmols m−2 day−1 from 1999 to 2012, and 25 mmols m−2 day−1 from 2013 to 2015. This indicates that Palau's largest lagoon and barrier reef system has not recovered, as of 2015, from the 50% decline in NEC in 1998 caused by the loss of coral cover following a severe bleaching event. The cause of the further decline in NEC in 2012–2013 is unclear. Lagoon residence times vary from 8 days during spring tides to 14 days during neap tides and drive substantial spring‐neap variations in lagoon TA (~25% of the mean salinity‐normalized ocean‐lagoon TA difference). Sparse measurements that do not resolve these spring‐neap variations can exhibit apparent long‐term variations in alkalinity that are not due to changes in NEC.
    Description: This work was partially supported by NSF award 1220529 to A.L.C., S.J.L., and K.E.F.S and NSF award 1737311 to A.L.C. and the Oceanography Department, Texas A&M University K.E.F.S.
    Description: 2021-01-06
    Keywords: Coral reef ; Calcification ; Bleaching ; Residence time ; Net ecosystem calcification ; Palau
    Repository Name: Woods Hole Open Access Server
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  • 6
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    Diverse coral communities in naturally acidified waters of a Western Pacific reef (2014)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 499-504, doi:10.1002/2013GL058489.
    Description: Anthropogenic carbon dioxide emissions are acidifying the oceans, reducing the concentration of carbonate ions ([CO32−]) that calcifying organisms need to build and cement coral reefs. To date, studies of a handful of naturally acidified reef systems reveal depauperate communities, sometimes with reduced coral cover and calcification rates, consistent with results of laboratory-based studies. Here we report the existence of highly diverse, coral-dominated reef communities under chronically low pH and aragonite saturation state (Ωar). Biological and hydrographic processes change the chemistry of the seawater moving across the barrier reefs and into Palau's Rock Island bays, where levels of acidification approach those projected for the western tropical Pacific open ocean by 2100. Nevertheless, coral diversity, cover, and calcification rates are maintained across this natural acidification gradient. Identifying the combination of biological and environmental factors that enable these communities to persist could provide important insights into the future of coral reefs under anthropogenic acidification.
    Description: Funded by a WHOI-OLI Postdoctoral Scholarship to KEFS, NSF OCE-1041106 to A.L.C. and D.C.M. and TNC award PNA/WHOI061810 to A.L.C.
    Description: 2014-07-16
    Keywords: Coral reefs ; Ocean acidification ; Carbonate chemistry ; Diversity ; Palau ; Calcification
    Repository Name: Woods Hole Open Access Server
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  • 7
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    Rapid generation of upwelling at a shelf break caused by buoyancy shutdown (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 294–312, doi:10.1175/JPO-D-14-0104.1.
    Description: Model analyses of an alongshelf flow over a continental shelf and slope reveal upwelling near the shelf break. A stratified, initially uniform, alongshelf flow undergoes a rapid adjustment with notable differences onshore and offshore of the shelf break. Over the shelf, a bottom boundary layer and an offshore bottom Ekman transport develop within an inertial period. Over the slope, the bottom offshore transport is reduced from the shelf’s bottom transport by two processes. First, advection of buoyancy downslope induces vertical mixing, destratifying, and thickening the bottom boundary layer. The downward-tilting isopycnals reduce the geostrophic speed near the bottom. The reduced bottom stress weakens the offshore Ekman transport, a process known as buoyancy shutdown of the Ekman transport. Second, the thickening bottom boundary layer and weakening near-bottom speeds are balanced by an upslope ageostrophic transport. The convergence in the bottom transport induces adiabatic upwelling offshore of the shelf break. For a time period after the initial adjustment, scalings are identified for the upwelling speed and the length scale over which it occurs. Numerical experiments are used to test the scalings for a range of initial speeds and stratifications. Upwelling occurs within an inertial period, reaching values of up to 10 m day−1 within 2 to 7 km offshore of the shelf break. Upwelling drives an interior secondary circulation that accelerates the alongshelf flow over the slope, forming a shelfbreak jet. The model results are compared with upwelling estimates from other models and observations near the Middle Atlantic Bight shelf break.
    Description: J. Benthuysen acknowledges support from the ARC Centre of Excellence for Climate System Science (CE110001028) and the MIT/WHOI Joint Program, where this work was initiated.
    Description: 2015-07-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Diapycnal mixing ; Ekman pumping/transport ; Mixing ; Topographic effects ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
    Type: Article
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