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  • 1
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dependence of the molecular electrostatic potential V on the method of calculating the wave function and on the basis set has been examined for three electronic states of H2CO. The calculations analyzed here refer to two different basis sets: a minimal set and a split-valence shell set, both supplemented with diffuse p orbitals. The methods of calculation include the SCF procedure (for the ground state), CI procedures of increasing complexity, which practically reach their asymptotic limits, and, for the excited states, simpler methods (rigid orbital excitation, complete CI of single excitations, electron-hole potential methods). It appears that in the ground state the two bases give equivalent descriptions of V when the CI process reaches the asymptotic limit and that the SCF descriptions approximate fairly well the more accurate ones. For the 3A1(π → π*) state the conclusions on the two basis sets are similar and, in addition, it is shown that a simple method (EHP) gives an approximation of V that reproduces the essential features of the complete CI calculations. The inadequacy of both basis sets for the representation of the 1A1(π → π*) state turns out to be evident. A discussion is presented concerning the possibility of adopting the calculation of V as an auxiliary tool to compare the accuracy of different descriptions of the same electronic state.
    Additional Material: 10 Ill.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 717-735 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A very simple model of DNA in biological media, consisting of electric charges related to the phosphate groups and to counterions immersed in structured media of constant permittivity, is introduced and tested with the study of a model for the first stages of the DNA transcription.This process is modeled into two steps involving three ‘states’: (1) the DNA system at the equilibrium, (2) the DNA with a small portion deprived of counterions, and (3) the DNA with a partial opening of the double helix in correspondence of the zone deprived of counterions.An extensive investigation involving as variable parameters the length of the DNA specimen (from 31 to 1511 base pairs), the amount of condensed counterion charge (from complete compensation to zero), and the geometrical parameters identifying the local opening has shown that the proposed transcription mechanism is reasonable, and that the DNA model considered here may fill a gap between accurate models including all the interactions - and employed at present for small fragments - and unstructured models addressed to inspect the behavior at the limit of infinite DNA length.
    Additional Material: 3 Ill.
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 35 (1989), S. 223-239 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recent studies performed in our group on a classical problem of quantum chemistry, with strong implications for theoretical biochemistry and pharmacology, are here summarized. Ab initio descriptions of noncovalent interactions, and in particular H bonds and acid-base couples, have been reexamined using as novel tools the decomposition of ΔE with the inclusion of CP corrections and a further decomposition of the ΔE components into group contributions. Some results of systematic analyses performed over H-bonded dimers are reported, supplemented by a successful application of this approach to a problem of noticeable economic importance (the identification of catalysts for the industrial synthesis of tensioactives). A new feature, presented here for the first time, is the extension of the CP-corrected decomposition of ΔE to bimolecular interactions in solution.
    Additional Material: 8 Ill.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 39 (1991), S. 851-870 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The solvation free energy ΔGsol of molecules exhibiting the anomeric effect is computed in an approach that considers a continuous distribution for the solvent. A partition of ΔGsol into separately evaluated contributions confirms that changes in the energy of the systems due to changes in conformation of the solute are ruled by the electrostatic contribution. A comparison with the “exact” values indicates that the approximate expression for the electrostatic contribution to ΔGsol are not accurate enough to permit a proper modeling of the solvent influence on the anomeric effect. The systems are composed of methanediol, methoxymethanol, dimethoxymethane, and 2-methoxytetrahydropyran in carbon tetrachloride, chloroform, acetone, and water. The calculations have been performed at the SCF level with the STO-3G and 4-31Gbasis sets.
    Additional Material: 4 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 40 (1991), S. 73-90 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The characteristics and potentialities of effective Hamiltonians using continuous distributions of matter (EHCD) are discussed, taking as the object of analysis the solvation model developed at our laboratory. EHCD methods for liquid systems appear to be quite flexible and of limited cost and acceptable accuracy and with limits of applicability not yet defined. The paper presents several extensions of the primitive elaboration of the model, in particular some addressed to (a) the inclusion of electron correlation in the ab initio treatment; (b) the elaboration of simplified procedures for molecules of large size; (c) the extension to nonisotropic descriptions of the medium; and (d) the consideration of dynamical and time-dependent aspects of solvation effects.
    Additional Material: 6 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 24 (1983), S. 307-316 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A variant of the interaction energy decomposition scheme proposed by Morokuma which gives more emphasis to polarized MOS is presented and tested on complexes of amines with Li+, BH3, and SO2. A more systematic utilization of polarized MOS (i.e., of orbitals of the interacting molecules computed with the SCF formalism in the Coulombic field of the other molecular components of the system) is adopted, and the connection of this decomposition of the supermolecule interaction energy with perturbation approaches utilizing such polarized MOS is discussed.
    Additional Material: 3 Tab.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 373-378 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Counterpoise corrections for the basis set superposition error to the components of the bimolecular interaction energy are defined for three methods of decomposition. The results for the case of the NH3 + BH3 interaction are presented and discussed.
    Additional Material: 3 Tab.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 527-539 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of some neutral acids of π type, bearing appropriate unsymmetrical substitutions at the C=C group with some selected bases (H2O, NH3, OH-), is compared with that of the parent compound of a new set of neutral π acids, bearing symmetrical substitutions at the C=C group with the same bases. The analyses of the interaction energy, performed according to two decomposition schemes, with and without the counterpoise corrections, make clear the similarity of symmetrically and unsymmetrically substituted neutral organic acids.
    Additional Material: 10 Ill.
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  • 9
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A detailed analysis of the ΔE(R) curves for nine hydrogen bonded dimers involving HF, H2O, and NH3 as partners, computed with five basis sets (STO-3G, MINI-1, 3-21G, 4-31G, and 6-31G**) and subjected to counterpoise (CP) corrections with three different methods is reported. Using several criteria and tests, the positive effect of full CP corrections for the description obtained with all the basis sets (with the exception of the STO-3G one) is pointed out. The CP correction at the 6-31G** levels is still sizable and improves the results with respect to the estimated Hartree-Fock limits of ΔE(Req) and Req. The results obtained with the application of the full CP correction to the MINI-I energies are of relatively good quality. The STO-3G energies at the SCF level are, on the contrary, overcorrected by the full CP correction and slightly improved by “limited” CP corrections: this basis set, however, is not recommended for calculations of geometries and stabilization energies of H-bonded dimers of this size.
    Additional Material: 7 Ill.
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  • 10
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A systematic examination of the components of the interaction energy, obtained with the Kitaura and Morokuma method, for nine H-bonded dimers without and with counterpoise corrections (CP) is presented. The nine dimers Hn A … HBHm correspond to all the possible combinations of HF, H2O, and NH3 as electron donors and electron acceptors. The interaction energy and the corresponding components have been computed over a sizable interval of intermolecular distances with five basis sets (STO-3G, MINI-1, 3-21G, 4-31G, 6-31G**) selected among those most extensively used to study interactions in larger systems. The CP corrections to the ΔE components have been obtained with a method, implemented in our group, which permits assignment to the pertinent components of ΔE of a physically reasonable portion of the CP correction even though different CP corrections are adopted. We examine here three versions of the CP correction, namely, the full CP correction (i.e., the original version of Boys and Bernardi) and CP corrections limited to the virtual space of the partner or to the electron donor only. The resulting data are employed to assess the basis set dependence of several models of hydrogen bonding (the electrostatic model, the semiclassical model, etc.) both with and without CP corrections.
    Additional Material: 9 Ill.
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