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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 34 (1988), S. 149-165 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using molecular orbital methods, we propose various models of interactions between GABA or analogs (TACA, muscimol, isomuscimol) and an hypothetical receptor molecular fragment, a methylguanidinium ion. The respective geometries of the GABA-, TACA-, muscimol-, and isomuscimol-methylguanidinium ion complexes are optimized using the semi-empirical MNDO method. Stabilization energies of the complexes obtained by substraction of the heats of formation of the optimized complexes from those of the optimized isolated molecules differentiate the behavior of the anionic heads between the agonist and antagonist compounds. Affinity and stabilization are confirmed by computing ab initio STO-3G ionization potentials and interaction energies taking into account counterpoise corrections. Results show a decrease of the interaction energy from GABA and TACA (-54.9 and -49.4 kcal/mol) to isomuscimol (-35.6 kcal/mol), via muscimol (-46.0 kcal/mol). The low interaction energy of the 5-isoxazolols as isomuscimol compared to the 3-isoxazolols, as muscimol, may explain their antagonist character.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 42 (1992), S. 1291-1326 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In this paper, we present Monte Carlo and molecular dynamics simulations of water molecules inside a ferrierite-type framework. Detailed analyses of the energetic, structural, and dynamical properties are carried out and compared with liquid water results in order to study the influence of the framework on the physisorbed water molecules.
    Additional Material: 16 Ill.
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  • 3
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In order to understand the interaction mode of benzodiazepine ligands with their peripheral binding sites, the structural and electronic properties of a benzodiazepine Ro 5-4864, Alpidem, PK 11195, and some analogs are characterized at the ab initio molecular orbital level. Conformational and electronic data, with a particular emphasis on electrostatic aspects, i.e., molecular electrostatic potentials, Mulliken atomic charges, and potential-derived charges, are used as input within molecular superimpositions to elaborate the pharmacophoric elements for the peripheral benzodiazepine ligands. A putative three-dimensional (3-D) steric and electronic model is proposed.
    Additional Material: 11 Ill.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 52 (1994), S. 57-77 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Triglycerides, the major components of neutral lipids, are important biomaterials, as they take part in the edification of membranes. In this perspective, the consideration of biological membranes at a molecular level requires detailed knowledge of the preferred conformations of the triglycerides in their various polymorphic forms. In this context, we adapted a molecular modeling approach, which allows the simulation the three-dimensional structure of the different polymorphic forms (α, β′, and β) valid for any triglyceride. Their conformational analysis is based on molecular mechanics calculations, as follows: First, a large number of isolated molecular structures were generated in a systematic structuretree analysis. For their generation, atomic charges within the Mulliken scheme, calculated at the ab initio RHF-LCAO-MO-SCF level (6-31G), were considered. The lowest-energy conformers were, next, correlated with experimental data (NMR, powder X-ray diffraction) in order to select α, β′, or β structures. Then, in a second step, these selected conformers were assembled, in head-to-tail dimers in order to form a monolayer. For this step, the use of potential-derived atomic charges is known to be more suitable. In this study, we consider triglycerides derived from the predominant fatty acids, i.e., stearic, elaidic, and oleic acids. © 1994 John Wiley & Sons, Inc.
    Additional Material: 12 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 46 (1993), S. 211-225 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Conformational analyses of large molecules as fatty acids and triglycerides are usually amenable by molecular mechanics. A correct evaluation of the electrostatic energy term is thus crucial in determining reliable results. In this contribution, we have considered the most abundant fatty acids in biomembranes, i.e., lauric, stearic, oleic, and elaidic acid, and the corresponding triglycerides, i.e., trilaurin, tristearin, triolein, and trielaidin, and estimated the Mulliken and potential-derived charges both at the semiempirical AM1 and ab initio HF MO STO-3G level. Atomic charges obtained by the Mulliken population analysis do not take into account the full geometry of the molecule. On the contrary, the change of conformation, due to different chains length or the presence of a trans or cis double bond, greatly influences the repartition of the potential-derived charges. A systematic comparative analysis shows that charges calculated by AM 1 are not suitable because as they do not reproduce potential-derived charges obtained by ab initio. © 1993 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 11 (1990), S. 680-693 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: An algorithm for predicting the conformations of strained molecules using Artificial Intelligence techniques is described and illustrated with some typical examples.
    Additional Material: 21 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 5 (1984), S. 349-352 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Formulas fully exploiting the periodicity symmetry of the electron density of polymers are deduced. They are shown to lead to efficient algorithms for the evaluation of Coulomb and exchange interactions in those systems.
    Type of Medium: Electronic Resource
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