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  • 1
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    Investigating the eddy diffusivity concept in the coastal ocean (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2201-2218, doi:10.1175/JPO-D-16-0020.1.
    Description: This paper aims to test the validity, utility, and limitations of the lateral eddy diffusivity concept in a coastal environment through analyzing data from coupled drifter and dye releases within the footprint of a high-resolution (800 m) high-frequency radar south of Martha’s Vineyard, Massachusetts. Specifically, this study investigates how well a combination of radar-based velocities and drifter-derived diffusivities can reproduce observed dye spreading over an 8-h time interval. A drifter-based estimate of an anisotropic diffusivity tensor is used to parameterize small-scale motions that are unresolved and underresolved by the radar system. This leads to a significant improvement in the ability of the radar to reproduce the observed dye spreading.
    Description: IR, AK, and SL were supported by the NSF OCE Grant 1332646. IR was also supported by NASA Grant NNX14AH29G.
    Description: 2016-12-29
    Keywords: Circulation/ Dynamics ; Coastal flows ; Diffusion ; Lagrangian circulation/transport ; Observational techniques and algorithms ; Radars/Radar observations ; Models and modeling ; Tracers
    Repository Name: Woods Hole Open Access Server
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  • 2
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    Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification (2017)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 122 (2017): 745–761, doi:10.1002/2016JC012326.
    Description: Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ∼8.5, significantly elevated above that of the surrounding open ocean (∼8.0–8.1) as a consequence of daytime NEP (up to 112 mmol C m−2 h−1). Diurnal-averaged NEC was 390 ± 90 mmol CaCO3 m−2 d−1, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m−2 h−1. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.
    Description: NSF Grant Number: 1220529
    Description: 2017-07-31
    Keywords: Coral reef ; Ocean acidification ; Calcification ; Photosynthesis ; Coral bleaching
    Repository Name: Woods Hole Open Access Server
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  • 3
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    Observations and a model of net calcification declines in Palau's largest coral reef lagoon between 1992 and 2015 (2020)
    American Geophysical Union
    Details
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016147, doi:10.1029/2020JC016147.
    Description: Net ecosystem calcification (NEC) rates of Palau's largest lagoon and barrier reef system between 1992 and 2015 are estimated from sparse total alkalinity (TA) and salinity measurements and a tidal exchange model in which surface lagoon water transported offshore on the ebb tide is replaced by saltier (denser) ocean water that sinks to the bottom after entering the lagoon on the flood tide. Observed lagoon salinities are accurately reproduced by the model with no adjustable parameters. To accurately reproduce observed lagoon TA, NEC for the lagoon‐barrier reef system was 70 mmols m−2 day−1 from 1992 to 1998, 35 mmols m−2 day−1 from 1999 to 2012, and 25 mmols m−2 day−1 from 2013 to 2015. This indicates that Palau's largest lagoon and barrier reef system has not recovered, as of 2015, from the 50% decline in NEC in 1998 caused by the loss of coral cover following a severe bleaching event. The cause of the further decline in NEC in 2012–2013 is unclear. Lagoon residence times vary from 8 days during spring tides to 14 days during neap tides and drive substantial spring‐neap variations in lagoon TA (~25% of the mean salinity‐normalized ocean‐lagoon TA difference). Sparse measurements that do not resolve these spring‐neap variations can exhibit apparent long‐term variations in alkalinity that are not due to changes in NEC.
    Description: This work was partially supported by NSF award 1220529 to A.L.C., S.J.L., and K.E.F.S and NSF award 1737311 to A.L.C. and the Oceanography Department, Texas A&M University K.E.F.S.
    Description: 2021-01-06
    Keywords: Coral reef ; Calcification ; Bleaching ; Residence time ; Net ecosystem calcification ; Palau
    Repository Name: Woods Hole Open Access Server
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  • 4
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    Inner-shelf response to cross-chelf wind stress : the importance of the cross-shelf density gradient in an idealized numerical model and field observations (2014)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2014. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 44 (2014): 86–103, doi:10.1175/JPO-D-13-075.1.
    Description: This study investigates the effects of horizontal and vertical density gradients on the inner-shelf response to cross-shelf wind stress by using an idealized numerical model and observations from a moored array deployed south of Martha’s Vineyard, Massachusetts. In two-dimensional (no along-shelf variation) numerical model runs of an initially stratified shelf, a cross-shelf wind stress drives vertical mixing that results in a nearly well-mixed inner shelf with a cross-shelf density gradient because of the sloping bottom. The cross-shelf density gradient causes an asymmetric response to on- and offshore wind stresses. For density increasing offshore, an offshore wind stress drives a near-surface offshore flow and near-bottom onshore flow that slightly enhances the vertical stratification and the cross-shelf circulation. An onshore wind stress drives the reverse cross-shelf circulation reducing the vertical stratification and the cross-shelf circulation. A horizontal Richardson number is shown to be the nondimensional parameter that controls the dependence of the wind-driven nondimensional cross-shelf transport on the cross-shelf density gradient. Field observations show the same empirical relationship between the horizontal Richardson number and transport fraction as the model predicts. These results show that it is the cross-shelf rather than vertical density gradient that is critical to predicting the inner-shelf cross-shelf transport driven by a cross-shelf wind stress.
    Description: This work was funded by Ocean Sciences Division of the National Science Foundation Grant OCE-0548961 and by the Woods Hole Oceanographic Institution through the Academic Programs Office and the Coastal Ocean Institute. Data central to this study were provided by the Martha’s Vineyard Coastal Observatory, which is funded by WHOI and the Jewett/EDUC/Harrison Foundation.
    Description: 2014-07-01
    Keywords: Circulation/ Dynamics ; Coastal flows ; Circulation/ Dynamics ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
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  • 5
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    Diverse coral communities in naturally acidified waters of a Western Pacific reef (2014)
    John Wiley & Sons
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 499-504, doi:10.1002/2013GL058489.
    Description: Anthropogenic carbon dioxide emissions are acidifying the oceans, reducing the concentration of carbonate ions ([CO32−]) that calcifying organisms need to build and cement coral reefs. To date, studies of a handful of naturally acidified reef systems reveal depauperate communities, sometimes with reduced coral cover and calcification rates, consistent with results of laboratory-based studies. Here we report the existence of highly diverse, coral-dominated reef communities under chronically low pH and aragonite saturation state (Ωar). Biological and hydrographic processes change the chemistry of the seawater moving across the barrier reefs and into Palau's Rock Island bays, where levels of acidification approach those projected for the western tropical Pacific open ocean by 2100. Nevertheless, coral diversity, cover, and calcification rates are maintained across this natural acidification gradient. Identifying the combination of biological and environmental factors that enable these communities to persist could provide important insights into the future of coral reefs under anthropogenic acidification.
    Description: Funded by a WHOI-OLI Postdoctoral Scholarship to KEFS, NSF OCE-1041106 to A.L.C. and D.C.M. and TNC award PNA/WHOI061810 to A.L.C.
    Description: 2014-07-16
    Keywords: Coral reefs ; Ocean acidification ; Carbonate chemistry ; Diversity ; Palau ; Calcification
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
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    Rapid generation of upwelling at a shelf break caused by buoyancy shutdown (2015)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 294–312, doi:10.1175/JPO-D-14-0104.1.
    Description: Model analyses of an alongshelf flow over a continental shelf and slope reveal upwelling near the shelf break. A stratified, initially uniform, alongshelf flow undergoes a rapid adjustment with notable differences onshore and offshore of the shelf break. Over the shelf, a bottom boundary layer and an offshore bottom Ekman transport develop within an inertial period. Over the slope, the bottom offshore transport is reduced from the shelf’s bottom transport by two processes. First, advection of buoyancy downslope induces vertical mixing, destratifying, and thickening the bottom boundary layer. The downward-tilting isopycnals reduce the geostrophic speed near the bottom. The reduced bottom stress weakens the offshore Ekman transport, a process known as buoyancy shutdown of the Ekman transport. Second, the thickening bottom boundary layer and weakening near-bottom speeds are balanced by an upslope ageostrophic transport. The convergence in the bottom transport induces adiabatic upwelling offshore of the shelf break. For a time period after the initial adjustment, scalings are identified for the upwelling speed and the length scale over which it occurs. Numerical experiments are used to test the scalings for a range of initial speeds and stratifications. Upwelling occurs within an inertial period, reaching values of up to 10 m day−1 within 2 to 7 km offshore of the shelf break. Upwelling drives an interior secondary circulation that accelerates the alongshelf flow over the slope, forming a shelfbreak jet. The model results are compared with upwelling estimates from other models and observations near the Middle Atlantic Bight shelf break.
    Description: J. Benthuysen acknowledges support from the ARC Centre of Excellence for Climate System Science (CE110001028) and the MIT/WHOI Joint Program, where this work was initiated.
    Description: 2015-07-01
    Keywords: Circulation/ Dynamics ; Boundary currents ; Diapycnal mixing ; Ekman pumping/transport ; Mixing ; Topographic effects ; Upwelling/downwelling
    Repository Name: Woods Hole Open Access Server
    Type: Article
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