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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 42 (1993), S. 1-10 
    ISSN: 0006-3592
    Keywords: mycelial kinetics ; symmetric branching tree ; microscopic parameters ; macroscopic parameters ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A mathematical model, linking microscopic to macroscopic parameters of the kinetics of mycelial growth is presented. The model consists of two parts: (a) a microscopic description, based on the assumption that growth of a mycelium can be represented approximately by the growth of a symmetric binary tree, where the branching level (microscopic state variable) is logarithmically related to the number of tips and segments; and (b) a macroscopic description which makes use of the microscopic description in order to define the parameters related to the evolution of biomass (macroscopic state variable) as a function of time. The latter uses a distribution of arrested tips in a population of mycelia, in order to estimate the fraction of non-growing biomass in terms of a power law function with coefficient, n, of the biomass concentration. The microscopic description explains the fact that the germ tube specific growth rate of Aspergillus nidulans measured in a growth chamber, is about the double the specific growth rate of this organism, when measured in shake flasks. It predicts that the length of the hyphal growth unit of the mycelium of Geotrichum candidum would be approximately the double the germ tube length measured at the time just before the first branching event. It also allows the derivation of useful expressions for predicting macroscopic parameters, such as the maximal specific growth rate, the initial amount of biomass, and the amount of biomass before the branching process starts. Those estimates are done in terms of microscopic quantities, i.e., the amount of germinated spores, the diameters of the spores and hyphae, the average rate of tip extension, and the average internodal segment length. Estimation of coefficient n by fitting the macroscopic description to a growth curve of A. niger gives an indication on the degree of skewness of the distribution of arrested mycelia. Estimated macroscopic parameters are in relative good agreement with measured average segment length. © 1993 John Wiley & Sons, Inc.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 44 (1994), S. 291-296 
    ISSN: 0006-3592
    Keywords: transition time ; control coefficients ; metabolic control analysis ; citric acid accumulation ; Aspergillu niger ; glycolysis ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Transition time of metabolic systems in introduced as a suitable optimization criterion for biotechnological processes in which it is desirable to reduce the lag time and minimize the mass contained within the system. Lag time is the time needed for the system to attain the steady state. Results obtained from the sensitivity analysis of this steady state response are presented within the metabolic control analysis and applied to 3 case studies. In all of them the information provided by the transition time control profile allows the implementation of a strategy for biotechnological manipulations aimed at the improvement of the process. © 1994 John Wiley & Sons, Inc.
    Additional Material: 4 Tab.
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  • 3
    ISSN: 0006-3592
    Keywords: Optimization ; metabolic systems ; linear programming ; S-system representation ; ethanol ; glycerol ; carbohydrates ; Saccharomyces cerevisiae ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Three metabolic models for the production of ethanol, glycerol, and carbohydrates in yeast are optimized with respect to different production rates. While originally nonlinear, all three optimization problems are reduced in such a way that methods of linear programming can be used. The optimizations lead to profiles of enzyme activities that are compatible with the physiology of the cells, which guarantees their viability and fitness, and yield higher rates of the desired final end products than the original systems. In order to increase ethanol rate production at least three times, six enzymes must be modulated. By contrast, when the production of glycerol or carbohydrates is optimized, modulation of just one enzyme (in the case of glycerol) or two enzymes (in the case of carbohydrates) is necessary to yield significant increases in product flux rate. Comparisons of our results with those obtained from other methods show great similarities and demonstrate that both are valid methods. The choice of one or the other method depends on the question of interest. © 1997 John Wiley & Sons, Inc. Biotechnol Bioeng 55: 758-772, 1997.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 49 (1996), S. 247-258 
    ISSN: 0006-3592
    Keywords: citric acid ; Aspergillus niger ; linear programming ; carbohydrate metabolism ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The metabolic pathway and the properties of many of the enzymes involved in the citric acid biosynthesis in the mold Aspergillus niger are well known. This fact, together with the availability of new theoretical frameworks aimed at quantitative analyses of control and dynamics in metabolic systems, has allowed us to construct a mathematical model of the carbohydrate metabolism in Aspergillus niger under conditions of citric acid accumulation. The model makes use of the S-system representation of biochemical systems, which renders it possible to use linear programming to optimize the process. It was found that maintaining the metabolite pools within narrow physiological limits (20% around the basal steady-state level) and allowing the enzyme concentrations to vary within a range of 0.1 to 50 times their basal values it is possible to triple the glycolytic flux while maintaining 100% yield of substrate transformation. To achieve these improvements it is necessary to modulate seven or more enzymes simultaneously. Although this seems difficult to implement at present, the results are useful because they indicate what the theoretical limits are and because they suggest several alternative strategies. © 1996 John Wiley & Sons, Inc.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 53 (1997), S. 296-303 
    ISSN: 0006-3592
    Keywords: biofilters ; microbial ecocystems ; compost ; granular activated carbon ; phospholipid fatty acid analysis ; POTW ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Compost and granular activated carbon biofilters operated at a wastewater treatment plant simultaneously removed low concentrations of hydrogen sulfide and volatile organic compounds. Through the use of phospholipid fatty acid analyses, the effects of declining pH caused by sulfide oxidation were established for microbial growth, microorganism stress, and microbial community structure. Microorganisms on both media demonstrated increases in microbial densities, varying degrees of environmental stress, and domination by gram-negative bacteria. However, the declining pH had little effect on compound removal, which was greater than 99% for the hydrogen sulfide and greater than 70% for the oxygenated and aromatic hydrocarbons. The microbial communities adjusted to difficult environmental conditions through acclimation of the species present or by growth of low-pH-tolerant species. © 1997 John Wiley & Sons, Inc. Biotechnol Bioeng 53: 296-303, 1997.
    Additional Material: 9 Ill.
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  • 6
    ISSN: 0006-3592
    Keywords: enzymatic peptide synthesis ; N-terminal protecting groups ; α-chymotrypsin ; experimental design ; partition constant ; reaction rate ; log P ; molecular refractivity ; response surfaces ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The influence of five different N-terminal protecting groups (For, Ac, Boc, Z, and Fmoc) and reaction conditions (temperature and dimethylformamide content) on the α-chymotrypsin-catalyzed synthesis of the dipeptide derivative X-Phe-Leu-NH2 was studied. Groups such as For, Ac, Boc, and Z always rendered good peptide yields (82% to 85%) at low reaction temperatures and DMF concentrations, which depended on the N-α protection choice. Boc and Z were the most reactive N-α groups and, in addition, the most suitable for peptide synthesis. On the other hand, the use of empirical design methodologies allowed, with minimal experimentation and by multiple regression, to deduce an equation, which correlates the logarithm of the first order kinetic constant (log k') with reaction temperature, DMF concentration, and hydrophobicity (log P values) of the different protecting groups. The predictive value of the equation was tested by comparing the performance of another protective group, such as Aloc, with the performance predicted by said equation. Experimental and calculated k' values were found to be in good agreement.
    Additional Material: 5 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 44 (1994), S. 104-111 
    ISSN: 0006-3592
    Keywords: stability analysis ; carbohydrate metabolism ; Aspergillus niger ; citric acid ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A model of the carbohydrate metabolism and the anaplerotic synthesis of oxalacetate in Aspergillus niger, under conditions of citric and accumulation, is presented. In this first article we set the stage for subsequent analysis within the framework of the biochemical system theory (BST): we formulate the model and develop the system representation in power law forms, showing that the steady state is locally stable. In the second article, the control structure of the system is described and a rationale for the optimization of the process is developed. © 1994 John Wiley & Sons, Inc.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 44 (1994), S. 112-118 
    ISSN: 0006-3592
    Keywords: sensitivity analysis ; carbohydrate metabolism ; Aspergillus niger ; citric acid ; optimization ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Steady state sensitivity analysis of a model of carbohydrate metabolism and anaplerotic synthesis of oxalacetate were, in Aspergillus niger under conditions of citric acid accumulation, carried out. The flux and metabolite concentration control structure of the system obtained shows that the hexokinase/substrate transport step is the main controlling step of the pathway. The quantitative contribution of the other enzyme catalyzed or transport steps are also discussed. These results allow the design of a proper strategy of biotechnological manipulation aimed at improvement of the process. © 1994 John Wiley & Sons, Inc.
    Additional Material: 3 Ill.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 29 (1987), S. 1035-1039 
    ISSN: 0006-3592
    Keywords: Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Additional Material: 4 Ill.
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  • 10
    ISSN: 0170-2041
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Eine bequeme Einstufen-Synthese für substituierte 12H-Chinoxalino[2,3-b][1,4]benzothiazine und -benzoxazine2,3-Dichlorchinoxalin (4) und die 2-Aminothiphenole 1a-h oder deren Zink-mercaptide 3a-h reagieren in alkalischem Dimethylformamid oder saurem Medium unter Cyclokondensation mit guten Ausbeuten zu entsprechenden 12H-Chinoxalino-[2,3-b][1,4]benzothiazinen 7a-h. Analog liefert die Umsetzung substituierter 2-Aminophenole 2 in basischem DMF die 12H-Chinoxalino[2,3-b][1,4]benzoxazine 7i-k. Ferner wurden Acetylderivate von 7a-k hergestellt.
    Notes: Cyclocondensation of 2,3-dichloroquinoxaline (4) and the 2-aminothiophenols 1a-h or their zinc mercaptides 3a-h in the presence of alkaline dimethylformamide or in acidic medium afforded the corresponding 12H-quinoxalino[2,3-b][1,4]benzothiazines 7a-h in excellent yields. Similarly, the reaction of 4 with substituted 2-aminophenols 2 in the presence of base using dimethylformamide as solvent gave the 12H-quinoxalino[2,3-b][1,4]-benzoxazines 7i-k. Acetyl derivatives of 7a-k were prepared.
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