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  • Chemical structure  (3)
  • Biopolymer constituents, protonation of ∼  (2)
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 62 (1982), S. 133-161 
    ISSN: 1432-2234
    Keywords: Reaction topology ; Potential energy surfaces ; Reaction path ; Chemical structure ; Reaction mechanism
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Some of the basic notions of chemistry, associated with an energy function of several variables, are shown to be of topological character. Properties of potential energy hypersurfaces, structural relations, models for interconversion processes and transformations between such models suggest a topological theory (reaction topology) for the analysis of potential energy hypersurfaces. By introducing appropriate topologies into the nuclear configuration spaceR and equivalent topologies on the energy hypersurfaceE, rigorous definitions are given for fundamental chemical concepts such asmolecular structure andreaction mechanism. These definitions are based on the properties of the expectation value of energy, a quantum mechanical observable. Topologies based on curvature, structural and energetic relations of the energy hypersurface are proposed for a theoretical interpretation of molecular processes.
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 51 (1979), S. 323-329 
    ISSN: 1432-2234
    Keywords: Biopolymer constituents, protonation of ∼
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Side-chain proton affinities for a series of peptide-forming amino acids have been calculated using ab initio Hartree-Fock-Roothaan SCF method; the order of proton affinities is Arg 〉 His 〉 Ser ≈ Tyr ≫ Lys. Protonation of some side-chains in a protein may introduce new energy levels in the band gaps thus fundamentally altering the conduction properties of the proteins.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 58 (1981), S. 309-330 
    ISSN: 1432-2234
    Keywords: Catchment regions ; Potential energy surfaces ; Reaction paths ; Chemical structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The space of internal coordinates of a molecular system is partitioned into catchment regions of various critical points of the energy hypersurface. The partitioning is based on an ordering of steepest descent paths into equivalence classes. The properties of these catchment regions and their boundaries are analyzed and the concepts of chemical structure, reaction path and reaction mechanism are discussed within the framework of the Born-Oppenheimer and energy hypersurface approximations. Relations between catchment regions and the chemically important reactive domains of energy hypersurfaces, as well as models for “branching” of reaction mechanisms, caused by instability domainsD μ, μ ≥ 1, are investigated.
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 58 (1981), S. 309-330 
    ISSN: 1432-2234
    Keywords: Catchment regions ; Potential energy surfaces ; Reaction paths ; Chemical structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The space of internal coordinates of a molecular system is partitioned into catchment regions of various critical points of the energy hypersurface. The partitioning is based on an ordering of steepest descent paths into equivalence classes. The properties of these catchment regions and their boundaries are analyzed and the concepts of chemical structure, reaction path and reaction mechanism are discussed within the framework of the Born-Oppenheimer and energy hypersurface approximations. Relations between catchment regions and the chemically important reactive domains of energy hypersurfaces, as well as models for “branching” of reaction mechanisms, caused by instability domainsD μ, μ ≥ 1, are investigated.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical chemistry accounts 54 (1979), S. 251-258 
    ISSN: 1432-2234
    Keywords: Biopolymer constituents, protonation of ∼ ; Purine bases
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Proton affinities of a large number of tautomeric adenine and guanine structures have been calculated using theab initio Hartree-Fock-Roothaan SCF method. For guanine, and to a lesser extent for adenine, it is likely that several protonated forms may co-exist in acidic solutions. Protonation at the “free” adenine and guanine positions in DNA may introduce effective acceptor levels between the energy bands of the polymer that may cause fundamental changes in the conduction properties of DNA.
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