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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 373-384 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In investigations of the molecular determinants for the recognition of drugs by a serotonin (5-HT) receptor in the brain, the commonality in the reactivity patterns of 5-HT congeners has been identified. On this basis a mechanistic hypothesis is proposed to explain the rank order of the affinity of drugs that bind to the receptor shared by 5-HT and LSD (the 5-HT/LSD receptor). This hypothesis describes the relation between affinity and the intramolecular rearrangement needed to make a 5-HT congener recognizable at the 5-HT/LSD receptor. The rearrangement of the congener aligns the electrostatic orientation vector of its indole portion in the direction defined by the vector in 5-HT. To further probe this mechanistic hypothesis the molecular determinants for the action of a new series of tryptamine derivatives was studied in which a methylenedioxy substituent is placed at the 5.6 or the 4,5 positions. The reactivity characteristics of these molecules are presented. The-oretical predictions for their activity on the 5-HT/LSD receptor are discussed. These predictions are based on the comparison of the electrostatic potentials of these molecules with the requirements for 5-HT-like recognition by the 5-HT/LSD receptor, and on simulations of molecular interactions with a molecular probe (imidazolium cztion) which represents a matching receptor site. The electrostatic nature of the complexes that these molecules form with imidazolium cation is revealed by the decomposition of the stabilization energy. It is shown that the affinity of these new compounds for 5-HT/LSD receptors can be predicted and explained on the basis of the working hypothesis obtained previously. Preliminary experimental data on the binding of 5,6- and 4.5-methylenedioxy derivatives of typtamine to the 5-HT/LSD receptors in brain confirm these findings.
    Additional Material: 9 Ill.
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  • 2
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Experimental studies on 5-hydroxytryptamine (5-HT) and its congeners have shown these compounds to interact with the same receptors in peripheral tissues and in brain. To evaluate the importance of the relative position of the 5-HT-like recognition elements at these receptors, we studied two compounds structurally related to 5-HT in which the structural elements involved in receptor recognition are positioned differently from 5-HT: 5-hydroxyaminotetrahydrobenzindole (FHATHBIN) in which the position of the side chain is fixed with respect to the indole, and 4(β-aminoethyl)-5-hydroxyindole (FAEFHI) in which the side chain is flexible, and connected to the indole at the C4 position (rather than at C3 as in 5-HT). Ab initio molecular orbital calculations of the molecules and model fragments were performed with STO-3G and 3-21G basis sets, using structural optimization procedures. The results show that both structures possess the reactivity elements required for the interaction with the 5-HT receptor, but that FAEFHI cannot be recognized at the 5-HT receptor because the side chain is held in the wrong conformation with respect to the indole portion by a strong hydrogen bond between the side chain amine group and the hydroxyl at C5. We report results from competition experiments for binding at high affinity 5-HT binding sites in brain membranes which support this conclusion by showing that FAEFHI has low affinity for these sites.
    Additional Material: 7 Ill.
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  • 3
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 35 (1989), S. 241-252 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Additional Material: 4 Ill.
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 37 (1990), S. 701-711 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A computational scheme based on a “mixed basis set” approach is applied to the study of the structure and the energetics in proton transfer systems. Five hydrogen-bonded systems of the type (CH3HnA ‥ H ‥ BHmCH3)+, where A and B can be N, O, or S, have been investigated with various minimal and extended basis sets. Calculations with the extended basis set yield double-well potential energy curves, which the minimal basis set is unable to reproduce. Calculations with the mixed basis set, constructed from an extended basis set on the atoms engaged in the hydrogen transfer part and a minimal basis set on the rest of the molecule, give predictions of geometries, potential energy curves, and relative energies similar to the results from the extended basis set. Inclusion of polarization functions in the mixed basis set becomes essential in systems that contain third row atoms. This scheme should become useful in studies of large molecules in which different parts can be represented at different levels of computational complexity.
    Additional Material: 3 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 24 (1983), S. 571-592 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Kekulé indices and conjugated circuits are computed for 36 Kekulé structures, together with two VB quantities associated with the corresponding factor graphs (previously called submolecules). These latter quantitites are nonadjacent numbers of Hosoya and the reciprocal of the connectivity indices of Randić. It was found that the index of Hosoya successfully orders a set of Kekulé structures belonging to the same hydrocarbon in a parallel order as their Kekulé indices and branching indices. This substantiates the relation between VB and MO theories. A code is derived by summing contributions of nonadjacent numbers in all Kekulé stuctures of a hydrocarbon. The order of the resulting codes is found to be identical to the order of the molecular properties (resonance energies, π-energies, and eigenvalues) of the hydrocarbons.
    Additional Material: 8 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 32 (1987), S. 211-219 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Practical aspects of the calculation of the proton transfer process in a model of the active site of the thiol protease papain are explored with basis sets of different sizes. Results from ab initio calculations with the STO-3G, 4-31G, 6-31G, 6-31G* basis set, and a 6-31G basis set augmented with polarization functions on the sulfur atom are compared for their performance in describing the proton transfer energy. The nature of the convergence of the calculated properties of the potential curve for proton transfer with the increase in basis set indicates the need for a split-valence basis set and for polarization functions on the sulfur in order to achieve an appropriate description of this system. Correlation corrections to the calculated energies are shown to contribute significantly to the characteristics of the proton transfer energy curve.
    Additional Material: 4 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 52 (1994), S. 113-127 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Optical nonlinearities affecting absorption spectra, above threshold dissociation, bond softening, and vibrational trapping are among the most important processes that have so far been examined when describing the dynamics of multiphoton excitation and fragmentation of molecular systems subject to intense laser fields. The relative merits of time-dependent and independent approaches are overviewed and discussed within the framework of H2+ photodissociation for which recent experimental data are available. Isotopes H2+ - D2+ behave in a markedly different manner with respect to the radiative coupling. Some of these differences are exploited for the detailed understanding of the underlying mechanism of the bond softening process. It is shown that this is not merely a single photon potential barrier lowering mechanism as has previously been invoked, but a competition between this mechanism and another five photon exchange mechanism, namely the simultaneous absorption of three photons followed by the subsequent emission of two photons. As for the vibrational trapping process, the relative sensitivity of the isotopes to the laser characteristics is such that, by adequately adjusting the wavelength and the intensity, one can suppress the fragmentation of one of the isotopes by locally confining it, whereas the other dissociates very fast. This is used as a possible scheme for isotope separation using intense lasers. © 1994 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
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