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  • Atomic, Molecular and Optical Physics  (16)
  • Wiley-Blackwell  (16)
  • MDPI Publishing
  • Oxford University Press
  • 1
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 18 (1980), S. 1405-1413 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Semiempirical MO calculations of the self-consistent charge and configuration (SCCC) method are reported for the acetonitrile-metal solvated species (CH3CN)xMn+, where M = Be2+ and Mg2+. Comparison of the delocalization energies for various chemical structures x = 1, 2, 3, 4, 6 leads to an expectation of a tetrahedral structure for the Be2+ species and an octahedral structure for the Mg2+ species. The electronic nature of the donor-acceptor interaction is also discussed.
    Additional Material: 8 Tab.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 117-127 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio molecular orbital (MO) calculations on the model peptide, N-methylacetamide (NMA), protonated N-methylacetamide (p-NMA), and two natural dipeptides, glyclyglycine (Gly-Gly) and alanylalanine (Ala-Ala), are reported. Calculations at the STO-3G. 3-21G. and 4-31 G levels account for the predominance of the trans conformation in globular proteins. By use of p-NMA as a model precursor, the formation of the peptide bond is studied by the methods of molecular quantum mechanics. These calculations lead to the conclusion that the trans conformation should predominate, in agreement with the crystal structural data on globular proteins. In order to reduce the amount of computer time required for what are evidently the first ab-initio MO calculations on natural dipeptides, force-field calculations have been employed to obtain the conformational potential energy maps.
    Additional Material: 11 Ill.
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  • 3
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The COLUMBUS program system is a collection of Fortran programs for performing general multireference single- and double-excitation configuration interaction (MRSDCI) wave function optimization based on the graphical unitary group approach. The program system also includes integral generation, SCF and MCSCF orbital optimization, integral transformation, and wave function analysis programs. The original program system was written in 1980 to 1981. Since that time, it has evolved into one of the most popular MRSDCI program systems used in the computational chemistry community. The discussion of this evolution will include the exploitation of efficient matrix-matrix and matrix-vector product computational kernels, the use of generally contracted symmetry-adapted orbital basis sets, general Hamiltonian diagonalization procedures, energy-based internal walk selection, flexible DRT specification, improved coupling-coefficient evaluation methods, coupled-pair functional and multireference CPF capabilities, and density matrix construction. The numerous versions of the program system that are maintained at different sites and on different computers are now in the process of being merged. The source code for this combined version will be made available to the computational chemistry community. The source code for a specific computer may be generated from the source code for another computer by a single pass through a simple filter utility that is included with the program system. The directly supported computers will initially include various models of VAX, Cray, FPS, IBM, CDC, and ETA machines with the addition of other machines shortly thereafter. The ongoing developments of the COLUMBUS system that are discussed include a new method for computing analytic energy gradients for MRSDCI wave functions. This effective-density-matrix based method avoids the “coupled perturbed MCSCF” solutions for each coordinate direction, avoids the transformation of any derivative-integral quantities from the AO to the MO basis, avoids the transformation of the coupling coefficients from the MO to the AO basis, allows a subset of the MCSCF doubly occupied orbitals to be frozen in the CI wave function, and allows the MRSDCI wave function to be generated from general reference CSFs that are not necessarily related to the MCSCF expansion CSFs.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 36 (1989), S. 773-790 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An analysis of the pathways and intermediates for the epoxidation of olefins using a Ru(IV)-oxo model complex is presented. Simple bonding concepts, coupled with INDO/1 semiempirical MO calculations, provide a description of the metal-oxo/olefin interaction that agrees well with experimental facts. Concerted [1 + 2] and [2 + 2] pathways are investigated and found to lead to unfavorable orbital interactions as with organic analogues. Nonconcerted process (those in which one bond is formed before the second), which connect the two concerted pathways, are preferred. A nonconcerted [1 + 2] pathway is preferred over a nonconcerted [2 + 2] pathway on the basis of less steric repulsions between the olefin and the metal ligands. Also, all open structures (those with one C—O bond formed) investigated minimized to bound epoxides. In the most favorable pathway, a nonconcerted [1 + 2] pathway, radical cation character on the terminal carbon increases as the nonconcerted process is induced. Preference for the bound epoxide intermediate over the oxometallocycle is simply explained by partial charge considerations.
    Additional Material: 7 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 26 (1984), S. 91-99 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations (self-consistent-field Hartree-Fock) using 6-31G and STO-4G basis sets are used to investigate the interaction between guanidinium and methylguanidinium ion with the carboxylate group of formate. Binding energies and optimum geometries are obtained and compared with reported results using a smaller basis set (STO-3G). The importance of this interaction in proteinsubstrate binding is discussed.
    Additional Material: 2 Ill.
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  • 6
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 27 (1985), S. 439-449 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The complete (nonreduced) αα probability density functions evaluated from the Hartree-Fock and simple Hartree product wavefunctions have been used to elucidate the angular features of spin correlation and the Fermi hole in the 23S state of helium and the ground state of beryllium. This approach shows that the local Fermi holes in these two cases are very similar and that the Fermi hole is essentially spherically symmetric when the reference electron is close to the nucleus. As the reference electron is removed to larger radial distances, appreciable polarization of the Fermi hole is observed. The polarization is greater in the direction of the nucleus than away from the nucleus, contrary to the situation in the Coulomb hole of the helium ground state where the polarization is greater away from the nucleus than toward the nucleus. Several other differences between the He 23S Fermi hole and the He 11S Coulomb hole are noted.
    Additional Material: 6 Ill.
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  • 7
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 29 (1986), S. 1-9 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pair distribution function h(r12;r1, γ) and the virial theorem are used to derive a general expression for the local contributions to the total correlation energy of an atom. A direct link between correlation effects and the correlation energy is obtained by use of G(r1, γ) and Γ(r1, y). The former is the probability associated with a given choice of r1 and γ, while the latter describes the local contribution to the correlation energy. Explicit calculations for the ground state of helium indicate that the angular dependence of the local contribution to the correlation energy is essentially independent of r1, whereas the local correlation energy shows a strong r1 dependence. The maximum contribution to the correlation energy occurs at intermediate values of γ where there is close agreement between the Hartree-Fock and exact densities.
    Additional Material: 2 Ill.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 38 (1990), S. 665-678 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The INDO/1 semi-empirical method is used to analyze the hydroxylation of alkanes by models for the putative active species in cytochromes P-450. In the insertion of oxygen into the C—H bond by a M - O complex there are four atoms of particular interest, the metal and oxygen atoms of the oxidant plus the C and H atom of the C—H bond to be activated. With four atoms being studied (3N-6=), 6 degrees of freedom need to be described and a nearly intractable computational problem results. Thus, two reaction coordinates (CHI and OAT) were developed in an attempt to describe alkane hydroxylation in a chemically meaningful way. CHI (C—H insertion) is a measure of the extent to which the C—H bond has been activated and transferred to the O atom. OAT (oxygen atom transfer) is a measure of the extent to which the C—O bond in the alcohol product has formed. The models chosen for the present study are manganyl (MnO) and ferryl (FeO) porphyrin complexes. Experimental evidence for manganese prophyrin complexes shows that as the axial ligand is made a stronger donor the insertion of the O atom into the C—H bond becomes less concerted. The INDO/1 method was used to calculate the points on the PES determined by the changes in OAT and CHI. The results point to the axial ligand modifying the pathway by changing the relative electro-/nucleophilicity of the oxygen atom.
    Additional Material: 2 Ill.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 20 (1981), S. 73-80 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab-initio self-consistent field calculations are undertaken in order to investigate the possibilities for intramolecular hydrogen bonding in 2-aminomethyl-3-carboxymethyl pyrrole, an analog of porphobilinogen. The structure which features a hydrogen bond between the carboxyl hydrogen and the nitrogen of the aminomethyl substituent shows a decrease in energy of 4 kcal/mol compared to the most stable structure which does not exhibit such bonds.
    Additional Material: 7 Ill.
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 39 (1991), S. 345-352 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The near-ultraviolet spectrum of a dinaphthonorbornadiene is reported and is interpreted using simple exciton theory that treats this molecule as a dimer of naphthalene. It shows examples of weak, intermediate, and strong coupling for the interaction of the three observed bands of naphthalene.
    Additional Material: 2 Ill.
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